GWAS Annotated: AFF3

Gene: ALF transcription elongation factor 3

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
AFF3GH02J099559-2:99559364:C:G0.3899Enhancer185-Distancechr2:99559198-99559368ENSR2_BPQGS, ENSR2_5TF97H, ENSR2_5TF97Z
CTCFZBTB33L3MBTL2SMC3RAD21ATF7MNTZNF217ZNF24TRIM22RXRANCOA1CC2D1AFOSRNF2ZNF143ZNF444ZSCAN29RB1SMARCA5RCOR1MYCBHLHE40RESTSIN3BSKIARID2YY1JUNDMGARBM25MAXSMARCA4XRCC5
AFF3GH02J099601-2:99601618:G:A1.9377Enhancer105-Distancechr2:99601442-99603332ENSR2_93GJF8
C11orf30FOSZNF316MAFKJUNDMAFF
AFF3GH02J099606-2:99607232:A:G0.4716Enhancer56-Distancechr2:99606579-99607236ENSR2_93GJGH-
AFF3GH02J099609-2:99610277:C:T0.3086Enhancer217-Distancechr2:99609418-99610862ENSR2_93GJHB
ZNF24EP400ZNF217MNTZNF282JUNDDPF2GMEB1CTBP1NFIBRCOR1FOXA1AFF1FOSATF7ZEB2SMARCE1HDAC3GABPB1HDAC1HMBOX1MYCIKZF1NFATC3FOXK2CEBPBMLLT1CBFA2T3ZNF639ATF4ATF2CREB1EHMT2HDAC2SMARCA4MITFNR2F1PKNOX1MTA1ARID1BBCORGATA3MBD2MAXNCOA1ZNF316RNF2GATAD2BLEF1NFICRAD51BRD9ESR1ESRRATAL1MGATRIM24ATF3SOX6NR2F2ARNTZBTB2MTA3L3MBTL2KDM1ATCF12EP300TEAD4NBNNCOA3SMARCC2NCOR1CBFA2T2TRIM28CHAMP1KLF16PHB2GATA2MTA2NFRKBGATA1GATAD2ANR2C1MEIS2NR2F6
AFF3GH02J099614-None0.0000Enhancer133-Distancechr2:99614771-99616064ENSR2_5TFLSF, ENSR2_84X44X, ENSR2_5TFLTJ
TRIM28RNF2RBM39ZNF592L3MBTL2ZNF687CTCFMGAMAXXRCC5MYCRESTZBTB33RAD21SMC3
AFF3GH02J099636-2:99636697:A:G0.8292Enhancer256EliteeQTLs,Distancechr2:99636181-99639048ENSR2_CCTXJ, ENSR2_93GJRK
MNTCREB3L1MGAMXI1FOXA2ZNF687BCORRNF2RAD21POLR2ANR2F6NFIBZNF217MAXMYCFOSNR2F2ZNF316NCOR1CTCFCREB1DPF2UBTFARID1BNFICTCF12RXRAZKSCAN1TAL1ESR1JUNDRESTCBFA2T3GATA3GATA2NCOA3MTA1RCOR1HNF4ANR2F1ESRRAHES1EP300NFXL1RAD51SP1IKZF1CLOCKNR3C1CTBP1CBFA2T2MBD2ELF1BHLHE40USF1ESR1CTCFRUNX3POLR2AEZH2
AFF3GH02J099649-2:99648299:G:GTTTTGTAAACTTTGAGGGT0.9305Enhancer36-Distancechr2:99648198-99648348ENSR2_CCTZD
CEBPB
AFF3GH02J099648-None0.0000Enhancer133EliteDistancechr2:99648418-99649307ENSR2_CCTZD
USF2BHLHE40EP300CTCFFOSSMC3RAD21SPI1
AFF3GH02J099662-2:99663231:G:C0.8179Enhancer161EliteeQTLs,Distancechr2:99662298-99664152ENSR2_BPR2S
FOXA2NR2F2EP300FOSJUNDESR1BHLHE40NR3C1SIN3AJUNDCEBPBFOSRAD21ESR1GATA3
AFF3GH02J099697-2:99698573:T:C1.2445Enhancer82-eQTLs,Distancechr2:99697934-99699461ENSR2_BPR7X, ENSR2_84X5W8
CHD1RESTFOSEP300RCOR1RAD21MAFKBHLHE40NFE2L2SMC3CEBPBATF3ATF7STAT3ATF4CEBPBFOSMYC
AFF3GH02J099706-2:99707564:G:GA1.0858Enhancer183EliteDistancechr2:99706799-99708257ENSR2_BPR97, ENSR2_93GKJL
POLR2ASPI1NFICNFIBEP300CEBPBLCORLCTCFMXI1
AFF3GH02J099710-2:99711665:G:A0.5492Enhancer82-Distancechr2:99710308-99712056ENSR2_BPR9R
ESR1FOXA1ZNF316MAFKMAFF
AFF3GH02J099728-2:99729594:G:T1.0068Enhancer91-Distancechr2:99728434-99730037ENSR2_93GKQT
NRF1RFX1GATA3EP300
AFF3GH02J099739-None0.0000Enhancer6-eRNA_co-expression,Distancechr2:99739129-99739508--
AFF3GH02J099771-2:99773087:C:A1.0571Enhancer369EliteDistancechr2:99771195-99773471ENSR2_93GL89
GABPB1ZBTB11ZBTB40E2F1NRF1E4F1EP400CREB1MNTATF2ATF3GABPACBX3POLR2AFOXK2ARID1BATF7ETV6CREB3L1SKILCBFA2T3CREMCHAMP1MTA3NR2F6DPF2ARNTZEB2TBPZNF592SMARCC2RNF2SOX6ZNF282MEIS2NEUROD1HDAC3CTBP1TAL1MBD2CC2D1ANCOA6NBNZBED1TRIM28HDAC1NCOR1TRIM24ZNF639EGR1GATA2BCORTEAD4NCOA2RESTKLF16SMARCA4ATF4MYCL3MBTL2ZNF184GATAD2BNCOA1NFATC3JUNDKDM1ACBFA2T2TBL1XR1JUNRCOR1NR2F1TCF12LEF1RLFIKZF1STAT1DACH1PHB2HES1ZNF318PKNOX1SMARCE1STAT5APMLZSCAN29HDAC2GATAD2AMTA2RB1GATA1NR3C1NFICFOXM1SMAD1CUX1BHLHE40NR2F2MLLT1EP300ZBTB5MGAZNF24AFF1EHMT2ESRRAMTA1CEBPBE2F6NFRKBMAXSPI1MEIS2EP400
AFF3GH02J099777-None0.0000Enhancer36-Distancechr2:99777199-99777401-
ZNF316NFE2NFE2L2
AFF3GH02J099785-None0.0000Enhancer36-Distancechr2:99785400-99785600--
AFF3GH02J099804-None0.0000Enhancer36-Distancechr2:99804018-99804068-
ZNF316
AFF3GH02J099806-None0.0000Enhancer99-Distancechr2:99806758-99807008ENSR2_93GLLB
NFIBJUNDELF1ESR1FOXA1GATA3MYC
AFF3GH02J099811-None0.0000Enhancer36-Distancechr2:99811698-99811848ENSR2_93GLMP
JUNDMYCFOS
AFF3GH02J099812-None0.0000Enhancer63-Distancechr2:99812667-99812895-
EZH2
AFF3GH02J099822-None0.0000Enhancer71-Distancechr2:99821296-99821368-
CTCFRESTRAD21
AFF3GH02J099821-2:99822315:TG:T0.9350Enhancer188EliteDistancechr2:99821530-99823211ENSR2_93GLQL, ENSR2_93GLQW
CTCFMGAMITFMAXMNTCEBPBFOSUSF1SMC3USF2BHLHE40ATF2CREB1ATF7JUNDE2F1CREMEP300RAD21
AFF3GH02J099827-2:99827500:A:G1.5321Enhancer153EliteDistancechr2:99827191-99827702ENSR2_93GLS8
MAXHNF4ARAD21RXRASPI1SP1
AFF3GH02J099841-None0.0000Enhancer63EliteDistancechr2:99841858-99842008ENSR2_93GLZG
FOSMNTUSF2NFE2L2SMC3BHLHE40SPI1
AFF3GH02J099851-2:99851535:G:T0.9656Enhancer36-Distancechr2:99851118-99851988-
PKNOX1SP1RXRAHNF4AREST
AFF3GH02J099856-2:99857224:T:G1.3656Enhancer82-Distancechr2:99856859-99858363-
MAFKSPI1RUNX3C11orf30MAFKMAFFZNF316
AFF3GH02J099859-None0.0000Enhancer63EliteDistancechr2:99859278-99859428ENSR2_93GM6H-
AFF3GH02J099860-2:99860832:T:A0.3728Enhancer133EliteDistancechr2:99860830-99861458ENSR2_BPS4J
ZNF316MAFKMAFFNFICARID1BFOSSOX6
AFF3GH02J099861-None0.0000Enhancer133EliteDistancechr2:99861478-99861708ENSR2_BPS4J
NFICARID1BFOSSOX6RESTSPI1RUNX3GATA2
AFF3GH02J099863-2:99864489:C:T1.5018Enhancer130-Distancechr2:99863618-99865587ENSR2_77TJT3, ENSR2_BPS54
FOSCEBPBYY1RESTEZH2JUNDEP300RAD21RXRAEGR1MAXFOXA2ATF3GATA2ZBTB33FOXA1SP1HNF4AGATA3CEBPB
AFF3GH02J099866-2:99866472:G:A0.8404Enhancer1-Distancechr2:99866043-99866975ENSR2_BPS58
STAT3CEBPBCTCFRAD21
AFF3GH02J099867-None0.0000Enhancer341EliteDistancechr2:99867571-99868408ENSR2_93GM8X
MXI1GATA2FOSE2F1CREMCEBPBL3MBTL2STAT3MAXMGABHLHE40MYCE2F6ATF3SMARCA4USF2GATA2SMARCA4RCOR1
AFF3GH02J099877-2:99880015:C:T1.2981Enhancer516EliteeQTLs,eRNA_co-expression,Distancechr2:99877916-99883954ENSR2_BPS74, ENSR2_84X9QQ, ENSR2_BPS7B, ENSR2_5THBDT, ENSR2_BPS7J
CEBPBRXRARUNX3HNF4ASPI1ESR1CEBPBGATA2POLR2AJUNDNFE2L2BHLHE40FOSSIX5SMARCA4GATA2USF1POLR2AUSF2JUNDFOSBHLHE40CEBPBNFE2L2RAD21SMC3RCOR1PKNOX1RFX5SMARCA4CTCFCTCFMXI1EP300TRIM28PKNOX1ESR1POLR2ASMC3RAD21MEIS2JUNDSIN3ARESTTAF1NR3C1CTBP1YY1GATA2ZNF263PKNOX1ESR1MAFK
AFF3GH02J099899-None0.0000Enhancer173-Distancechr2:99899380-99899588-
YY1SP1RAD21HNF4AJUNDATF3NR2F2RXRAFOXA1KAT2BMAFKMAFFMAX
AFF3GH02J099926-2:99926599:A:G0.2884Enhancer1-Distancechr2:99926198-99927528ENSR2_84XBR8
FOSCEBPB
AFF3GH02J099939-None0.0000Enhancer137-Distancechr2:99939218-99939368-
YY1RAD21LCORLZBTB33NFICJUNDSP1RESTRXRAEGR1FOXA1NR2F2NFIBFOXA2HNF4AATF3HNF4G
AFF3GH02J099974-2:99974559:T:C0.6367Enhancer182-Distancechr2:99974405-99976130ENSR2_93GNDR, ENSR2_BPSP2
TRIM28ZNF263MXI1SMARCA4FOSEP300JUNDRAD21SIN3ACEBPBGATA2MEIS2GATA3RCOR1ESR1FOSBCL3FOSSMARCA4
AFF3GH02J099984-2:99984663:T:C0.4394Enhancer82-Distancechr2:99984225-99985568ENSR2_BPSQF
GATA2ESR1RCOR1RAD21YY1PKNOX1
AFF3GH02J100008-2:100013653:A:G1.0555Enhancer399EliteeRNA_co-expression,Distancechr2:100008557-100015525ENSR2_BPSTW, ENSR2_BPSWL, ENSR2_5TJ66S
JUNDEP300SPI1SPI1IKZF1ESR1RCOR1JUNDNR2F2BHLHE40FOSMAFKEP300CTCFTRIM28GATA3CTBP1ATF7SP1FOXA2JUNDMAXARID1BHNF4AFOSCHD1JUNRCOR1ESR1ATF4RAD21MYCMAFKBHLHE40ZNF316ATF3FOSL2RXRANFE2L2SMC3EP300EP400NR2F1TBPBACH1TRIM24IKZF1CEBPBL3MBTL2POLR2A
AFF3GH02J100017-None0.0000Enhancer133EliteDistancechr2:100017304-100017930ENSR2_93GNTC
TRIM28SMARCA4PKNOX1
AFF3GH02J100018-2:100019062:C:T0.6512Enhancer167EliteeQTLs,Distancechr2:100018165-100019789ENSR2_93GNTN
MXI1EP300MAFKPKNOX1CTCFJUNDFOSCEBPBRAD21
AFF3GH02J100056-None0.0000Enhancer99-Distancechr2:100056598-100056708ENSR2_BPT5R
GATA2GATA3JUNDFOXA1ESR1
AFF3GH02J100060-None0.0000Enhancer56-Distancechr2:100060618-100061598-
CREB1ATF2ETS1RUNX3
AFF3GH02J100067-2:100068047:G:C0.6657Enhancer297EliteeQTLs,eRNA_co-expression,Distancechr2:100067538-100069067ENSR2_93GPDT
ASH2LHDAC1FOXA2GATA3SP1KDM1AJUNDNCOR1ATF3FOXA1RXRAHNF1AETV4ZNF24GATA4TFAP4TBX3HDAC2FOXK2ESR1SOX13RAD21SKIEP300MAFFBHLHE40CREMNR2F6RESTHNF4AETS1TCF12TCF7ZNF384FOSL2POLR2AZBTB33RNF2ARID3AFOXP1TBL1XR1NR3C1CBX2CTCF
AFF3GH02J100071-None0.0000Enhancer36-Distancechr2:100071600-100071800-
RUNX3SPI1
AFF3GH02J100083-2:100083532:T:C0.6224Enhancer1-eQTLs,Distancechr2:100083400-100084273ENSR2_BPT9P-
AFF3GH02J100104-2:100106446:A:G0.1678Promoter/Enhancer370EliteeQTLs,Distancechr2:100104199-100107002ENSR2_CCX7B, ENSR2_84XGL2, ENSR2_CCX7F, ENSR2_5TJPTJ, ENSR2_77TX8L, ENSR2_93GPS3
ZFXFOXM1POLR2AMXI1SMC3EZH2SUZ12SMARCE1RBM39RAD21RUNX3L3MBTL2RNF2RBBP5EP300SP1ZNF263TRIM28EP300EGR1RNF2ZFXTCF12
AFF3GH02J100109-2:100110014:G:C0.1901Enhancer63EliteeQTLs,Distancechr2:100109816-100110682-
EZH2PAX5
AFF3GH02J100113-2:100113960:G:T0.0699Enhancer180EliteeQTLs,C-HiC,Distancechr2:100113143-100115591ENSR2_BPTG4
ETS1SPI1
AFF3GH02J100140-2:100142823:T:C0.5079Enhancer303EliteeQTLs,Distancechr2:100140384-100143323ENSR2_93GQ6X, ENSR2_BPTL6, ENSR2_BPTL8
POLR2ATAF1SPI1CREB1BATFCTCFPOLR2ANBNMTA2MEF2BPKNOX1TAF1ELF1ZBED1CBX5SRFGABPAZNF217TBL1XR1BCL3RCOR1SPI1RUNX3RAD21BHLHE40BACH1NFICEEDPOU2F2IKZF1RESTNFATC3MEF2CTBX21EP300ETS1ELK1ATF2MTA3YY1DPF2PAX5EZH2TCF12MEF2ASTAT5AIRF4NFATC1JUNBETV6BATFRXRACBFBBCL11ACREMIKZF2
AFF3GH02J100173-2:100174119:C:T0.3449Enhancer82-eQTLs,Distancechr2:100173800-100174527ENSR2_93GQJL
RXRARESTSP1RAD21HNF4AJUNDNR2F2
AFF3GH02J100178-None0.0000Enhancer178-Distancechr2:100178198-100178328ENSR2_BPTRD, ENSR2_5TK7C5
CTCFCTBP1DPF2ZNF444RCOR1HNRNPLLZNF579NRF1SMARCA4TRIM22CREB1RFX1ATF7HDAC1E2F1SMC3RXRASP1RAD21GABPAPKNOX1FOXA1ARID3AZNF143GABPB1FOXK2MYCELK1YY1NR2C1ZBTB40ELF1CREMIRF1MTA2RESTHCFC1FOXA2BMI1ELF4NFATC3E4F1JUNDPOU2F2
AFF3GH02J100192-2:100195441:A:C0.1136Enhancer199EliteeQTLs,Distancechr2:100192916-100195787ENSR2_93GQQ7
SP1FOXA2RXRARAD21NR2F2HNF4APKNOX1MEIS2CTBP1FOSEP300IKZF1SOX6GATA2EP300CTCFPOLR2ACEBPB
AFF3GH02J100196-2:100197240:C:T0.7587Enhancer274EliteeQTLs,Distancechr2:100196438-100199294ENSR2_CCXG4, ENSR2_84XJLK
CTCFEP300SP1TRIM28POLR2AEP300TBPUBTFNRF1ARID1BCTBP1SMARCA4RAD21TAF7RCOR1SOX6TCF12RFX5CBFA2T2ZNF24CTCFTAL1MEIS2CBFA2T3IKZF1RXRAPKNOX1ELF1NFIC
AFF3GH02J100213-2:100213886:T:C0.1371Enhancer168-eQTLschr2:100213751-100214968ENSR2_BPTZM
MAXRAD21ESR1RXRAHNF4AEP300SP1YY1KDM1AHNF4AARID3ARESTRXRAJUNDGABPASP1RAD21CEBPBESR1EP300MAXZBTB33ATF3FOXA2NR2F2SMC3EGR1FOXA1SPI1CTCFTBX3XRCC5TCF7HNF4GBHLHE40NCOR1FOSL2POLR2AEP300
AFF3GH02J100393-2:100394208:A:G1.1096Enhancer250EliteeRNA_co-expressionchr2:100393874-100396016ENSR2_93GSWB
PAX8IKZF2MTA2MLLT1MEF2BEBF1BHLHE40ZNF687POLR2APAX5ZNF592ATF7RFX5CREB1CREMNBNTAF1E4F1YY1POU2F2BCL3ZNF384PKNOX1SMARCA5ATF7ARID3AZBTB40HDAC2MTA2DPF2IKZF1JUNBATF2NFATC3SKILGATAD2BNBNJUNDEP300YY1BCL11ATBPCUX1MLLT1RELBSPI1TBX21PKNOX1TRIM22NFICETV6BCL3POU2F2EBF1ZBED1IKZF2ELF1BATFRUNX3ARNTSMAD1TCF12IRF4MEF2BCREMMXI1TAF1STAT3EEDPAX5ETS1BHLHE40MAXSMC3ZNF687ZNF592