GWAS Annotated Elements: AFF3

Gene: ALF transcription elongation factor 3

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH02J099559 - 2:99559364:C:G 0.3899 Enhancer - Distance chr2:99559198-99559368
CTCFZBTB33L3MBTL2SMC3RAD21ATF7MNTZNF217ZNF24TRIM22RXRANCOA1CC2D1AFOSRNF2ZNF143ZNF444ZSCAN29RB1SMARCA5RCOR1MYCBHLHE40RESTSIN3BSKIARID2YY1JUNDMGARBM25MAXSMARCA4XRCC5
GH02J099601 - 2:99601618:G:A 1.9377 Enhancer - Distance chr2:99601442-99603332
C11orf30FOSZNF316MAFKJUNDMAFF
GH02J099606 - 2:99607232:A:G 0.4716 Enhancer - Distance chr2:99606579-99607236 -
GH02J099609 - 2:99610277:C:T 0.3086 Enhancer - Distance chr2:99609418-99610862
ZNF24EP400ZNF217MNTZNF282JUNDDPF2GMEB1CTBP1NFIBRCOR1FOXA1AFF1FOSATF7ZEB2SMARCE1HDAC3GABPB1HDAC1HMBOX1MYCIKZF1NFATC3FOXK2CEBPBMLLT1CBFA2T3ZNF639ATF4ATF2CREB1EHMT2HDAC2SMARCA4MITFNR2F1PKNOX1MTA1ARID1BBCORGATA3MBD2MAXNCOA1ZNF316RNF2GATAD2BLEF1NFICRAD51BRD9ESR1ESRRATAL1MGATRIM24ATF3SOX6NR2F2ARNTZBTB2MTA3L3MBTL2KDM1ATCF12EP300TEAD4NBNNCOA3SMARCC2NCOR1CBFA2T2TRIM28CHAMP1KLF16PHB2GATA2MTA2NFRKBGATA1GATAD2ANR2C1MEIS2NR2F6
GH02J099614 - None 0.0000 Enhancer - Distance chr2:99614771-99616064
TRIM28RNF2RBM39ZNF592L3MBTL2ZNF687CTCFMGAMAXXRCC5MYCRESTZBTB33RAD21SMC3
GH02J099636 - 2:99636697:A:G 0.8292 Enhancer Elite eQTLs,Distance chr2:99636181-99639048
MNTCREB3L1MGAMXI1FOXA2ZNF687BCORRNF2RAD21POLR2ANR2F6NFIBZNF217MAXMYCFOSNR2F2ZNF316NCOR1CTCFCREB1DPF2UBTFARID1BNFICTCF12RXRAZKSCAN1TAL1ESR1JUNDRESTCBFA2T3GATA3GATA2NCOA3MTA1RCOR1HNF4ANR2F1ESRRAHES1EP300NFXL1RAD51SP1IKZF1CLOCKNR3C1CTBP1CBFA2T2MBD2ELF1BHLHE40USF1ESR1CTCFRUNX3POLR2AEZH2
GH02J099649 - 2:99648299:G:GTTTTGTAAACTTTGAGGGT 0.9305 Enhancer - Distance chr2:99648198-99648348
CEBPB
GH02J099648 - None 0.0000 Enhancer Elite Distance chr2:99648418-99649307
USF2BHLHE40EP300CTCFFOSSMC3RAD21SPI1
GH02J099662 - 2:99663231:G:C 0.8179 Enhancer Elite eQTLs,Distance chr2:99662298-99664152
FOXA2NR2F2EP300FOSJUNDESR1BHLHE40NR3C1SIN3AJUNDCEBPBFOSRAD21ESR1GATA3
GH02J099697 - 2:99698573:T:C 1.2445 Enhancer - eQTLs,Distance chr2:99697934-99699461
CHD1RESTFOSEP300RCOR1RAD21MAFKBHLHE40NFE2L2SMC3CEBPBATF3ATF7STAT3ATF4CEBPBFOSMYC
GH02J099706 - 2:99707564:G:GA 1.0858 Enhancer Elite Distance chr2:99706799-99708257
POLR2ASPI1NFICNFIBEP300CEBPBLCORLCTCFMXI1
GH02J099710 - 2:99711665:G:A 0.5492 Enhancer - Distance chr2:99710308-99712056
ESR1FOXA1ZNF316MAFKMAFF
GH02J099728 - 2:99729594:G:T 1.0068 Enhancer - Distance chr2:99728434-99730037
NRF1RFX1GATA3EP300
GH02J099739 - None 0.0000 Enhancer - eRNA_co-expression,Distance chr2:99739129-99739508 -
GH02J099771 - 2:99773087:C:A 1.0571 Enhancer Elite Distance chr2:99771195-99773471
GABPB1ZBTB11ZBTB40E2F1NRF1E4F1EP400CREB1MNTATF2ATF3GABPACBX3POLR2AFOXK2ARID1BATF7ETV6CREB3L1SKILCBFA2T3CREMCHAMP1MTA3NR2F6DPF2ARNTZEB2TBPZNF592SMARCC2RNF2SOX6ZNF282MEIS2NEUROD1HDAC3CTBP1TAL1MBD2CC2D1ANCOA6NBNZBED1TRIM28HDAC1NCOR1TRIM24ZNF639EGR1GATA2BCORTEAD4NCOA2RESTKLF16SMARCA4ATF4MYCL3MBTL2ZNF184GATAD2BNCOA1NFATC3JUNDKDM1ACBFA2T2TBL1XR1JUNRCOR1NR2F1TCF12LEF1RLFIKZF1STAT1DACH1PHB2HES1ZNF318PKNOX1SMARCE1STAT5APMLZSCAN29HDAC2GATAD2AMTA2RB1GATA1NR3C1NFICFOXM1SMAD1CUX1BHLHE40NR2F2MLLT1EP300ZBTB5MGAZNF24AFF1EHMT2ESRRAMTA1CEBPBE2F6NFRKBMAXSPI1MEIS2EP400
GH02J099777 - None 0.0000 Enhancer - Distance chr2:99777199-99777401
ZNF316NFE2NFE2L2
GH02J099785 - None 0.0000 Enhancer - Distance chr2:99785400-99785600 -
GH02J099804 - None 0.0000 Enhancer - Distance chr2:99804018-99804068
ZNF316
GH02J099806 - None 0.0000 Enhancer - Distance chr2:99806758-99807008
NFIBJUNDELF1ESR1FOXA1GATA3MYC
GH02J099811 - None 0.0000 Enhancer - Distance chr2:99811698-99811848
JUNDMYCFOS
GH02J099812 - None 0.0000 Enhancer - Distance chr2:99812667-99812895
EZH2
GH02J099822 - None 0.0000 Enhancer - Distance chr2:99821296-99821368
CTCFRESTRAD21
GH02J099821 - 2:99822315:TG:T 0.9350 Enhancer Elite Distance chr2:99821530-99823211
CTCFMGAMITFMAXMNTCEBPBFOSUSF1SMC3USF2BHLHE40ATF2CREB1ATF7JUNDE2F1CREMEP300RAD21
GH02J099827 - 2:99827500:A:G 1.5321 Enhancer Elite Distance chr2:99827191-99827702
MAXHNF4ARAD21RXRASPI1SP1
GH02J099841 - None 0.0000 Enhancer Elite Distance chr2:99841858-99842008
FOSMNTUSF2NFE2L2SMC3BHLHE40SPI1
GH02J099851 - 2:99851535:G:T 0.9656 Enhancer - Distance chr2:99851118-99851988
PKNOX1SP1RXRAHNF4AREST
GH02J099856 - 2:99857224:T:G 1.3656 Enhancer - Distance chr2:99856859-99858363
MAFKSPI1RUNX3C11orf30MAFKMAFFZNF316
GH02J099859 - None 0.0000 Enhancer Elite Distance chr2:99859278-99859428 -
GH02J099860 - 2:99860832:T:A 0.3728 Enhancer Elite Distance chr2:99860830-99861458
ZNF316MAFKMAFFNFICARID1BFOSSOX6
GH02J099861 - None 0.0000 Enhancer Elite Distance chr2:99861478-99861708
NFICARID1BFOSSOX6RESTSPI1RUNX3GATA2
GH02J099863 - 2:99864489:C:T 1.5018 Enhancer - Distance chr2:99863618-99865587
FOSCEBPBYY1RESTEZH2JUNDEP300RAD21RXRAEGR1MAXFOXA2ATF3GATA2ZBTB33FOXA1SP1HNF4AGATA3CEBPB
GH02J099866 - 2:99866472:G:A 0.8404 Enhancer - Distance chr2:99866043-99866975
STAT3CEBPBCTCFRAD21
GH02J099867 - None 0.0000 Enhancer Elite Distance chr2:99867571-99868408
MXI1GATA2FOSE2F1CREMCEBPBL3MBTL2STAT3MAXMGABHLHE40MYCE2F6ATF3SMARCA4USF2GATA2SMARCA4RCOR1
GH02J099877 - 2:99880015:C:T 1.2981 Enhancer Elite eQTLs,eRNA_co-expression,Distance chr2:99877916-99883954
CEBPBRXRARUNX3HNF4ASPI1ESR1CEBPBGATA2POLR2AJUNDNFE2L2BHLHE40FOSSIX5SMARCA4GATA2USF1POLR2AUSF2JUNDFOSBHLHE40CEBPBNFE2L2RAD21SMC3RCOR1PKNOX1RFX5SMARCA4CTCFCTCFMXI1EP300TRIM28PKNOX1ESR1POLR2ASMC3RAD21MEIS2JUNDSIN3ARESTTAF1NR3C1CTBP1YY1GATA2ZNF263PKNOX1ESR1MAFK
GH02J099899 - None 0.0000 Enhancer - Distance chr2:99899380-99899588
YY1SP1RAD21HNF4AJUNDATF3NR2F2RXRAFOXA1KAT2BMAFKMAFFMAX
GH02J099926 - 2:99926599:A:G 0.2884 Enhancer - Distance chr2:99926198-99927528
FOSCEBPB
GH02J099939 - None 0.0000 Enhancer - Distance chr2:99939218-99939368
YY1RAD21LCORLZBTB33NFICJUNDSP1RESTRXRAEGR1FOXA1NR2F2NFIBFOXA2HNF4AATF3HNF4G
GH02J099974 - 2:99974559:T:C 0.6367 Enhancer - Distance chr2:99974405-99976130
TRIM28ZNF263MXI1SMARCA4FOSEP300JUNDRAD21SIN3ACEBPBGATA2MEIS2GATA3RCOR1ESR1FOSBCL3FOSSMARCA4
GH02J099984 - 2:99984663:T:C 0.4394 Enhancer - Distance chr2:99984225-99985568
GATA2ESR1RCOR1RAD21YY1PKNOX1
GH02J100008 - 2:100013653:A:G 1.0555 Enhancer Elite eRNA_co-expression,Distance chr2:100008557-100015525
JUNDEP300SPI1SPI1IKZF1ESR1RCOR1JUNDNR2F2BHLHE40FOSMAFKEP300CTCFTRIM28GATA3CTBP1ATF7SP1FOXA2JUNDMAXARID1BHNF4AFOSCHD1JUNRCOR1ESR1ATF4RAD21MYCMAFKBHLHE40ZNF316ATF3FOSL2RXRANFE2L2SMC3EP300EP400NR2F1TBPBACH1TRIM24IKZF1CEBPBL3MBTL2POLR2A
GH02J100017 - None 0.0000 Enhancer Elite Distance chr2:100017304-100017930
TRIM28SMARCA4PKNOX1
GH02J100018 - 2:100019062:C:T 0.6512 Enhancer Elite eQTLs,Distance chr2:100018165-100019789
MXI1EP300MAFKPKNOX1CTCFJUNDFOSCEBPBRAD21
GH02J100056 - None 0.0000 Enhancer - Distance chr2:100056598-100056708
GATA2GATA3JUNDFOXA1ESR1
GH02J100060 - None 0.0000 Enhancer - Distance chr2:100060618-100061598
CREB1ATF2ETS1RUNX3
GH02J100067 - 2:100068047:G:C 0.6657 Enhancer Elite eQTLs,eRNA_co-expression,Distance chr2:100067538-100069067
ASH2LHDAC1FOXA2GATA3SP1KDM1AJUNDNCOR1ATF3FOXA1RXRAHNF1AETV4ZNF24GATA4TFAP4TBX3HDAC2FOXK2ESR1SOX13RAD21SKIEP300MAFFBHLHE40CREMNR2F6RESTHNF4AETS1TCF12TCF7ZNF384FOSL2POLR2AZBTB33RNF2ARID3AFOXP1TBL1XR1NR3C1CBX2CTCF
GH02J100071 - None 0.0000 Enhancer - Distance chr2:100071600-100071800
RUNX3SPI1
GH02J100083 - 2:100083532:T:C 0.6224 Enhancer - eQTLs,Distance chr2:100083400-100084273 -
GH02J100104 - 2:100106446:A:G 0.1678 Promoter/Enhancer Elite eQTLs,Distance chr2:100104199-100107002
ZFXFOXM1POLR2AMXI1SMC3EZH2SUZ12SMARCE1RBM39RAD21RUNX3L3MBTL2RNF2RBBP5EP300SP1ZNF263TRIM28EP300EGR1RNF2ZFXTCF12
GH02J100109 - 2:100110014:G:C 0.1901 Enhancer Elite eQTLs,Distance chr2:100109816-100110682
EZH2PAX5
GH02J100113 - 2:100113960:G:T 0.0699 Enhancer Elite eQTLs,C-HiC,Distance chr2:100113143-100115591
ETS1SPI1
GH02J100140 - 2:100142823:T:C 0.5079 Enhancer Elite eQTLs,Distance chr2:100140384-100143323
POLR2ATAF1SPI1CREB1BATFCTCFPOLR2ANBNMTA2MEF2BPKNOX1TAF1ELF1ZBED1CBX5SRFGABPAZNF217TBL1XR1BCL3RCOR1SPI1RUNX3RAD21BHLHE40BACH1NFICEEDPOU2F2IKZF1RESTNFATC3MEF2CTBX21EP300ETS1ELK1ATF2MTA3YY1DPF2PAX5EZH2TCF12MEF2ASTAT5AIRF4NFATC1JUNBETV6BATFRXRACBFBBCL11ACREMIKZF2
GH02J100173 - 2:100174119:C:T 0.3449 Enhancer - eQTLs,Distance chr2:100173800-100174527
RXRARESTSP1RAD21HNF4AJUNDNR2F2
GH02J100178 - None 0.0000 Enhancer - Distance chr2:100178198-100178328
CTCFCTBP1DPF2ZNF444RCOR1HNRNPLLZNF579NRF1SMARCA4TRIM22CREB1RFX1ATF7HDAC1E2F1SMC3RXRASP1RAD21GABPAPKNOX1FOXA1ARID3AZNF143GABPB1FOXK2MYCELK1YY1NR2C1ZBTB40ELF1CREMIRF1MTA2RESTHCFC1FOXA2BMI1ELF4NFATC3E4F1JUNDPOU2F2
GH02J100192 - 2:100195441:A:C 0.1136 Enhancer Elite eQTLs,Distance chr2:100192916-100195787
SP1FOXA2RXRARAD21NR2F2HNF4APKNOX1MEIS2CTBP1FOSEP300IKZF1SOX6GATA2EP300CTCFPOLR2ACEBPB
GH02J100196 - 2:100197240:C:T 0.7587 Enhancer Elite eQTLs,Distance chr2:100196438-100199294
CTCFEP300SP1TRIM28POLR2AEP300TBPUBTFNRF1ARID1BCTBP1SMARCA4RAD21TAF7RCOR1SOX6TCF12RFX5CBFA2T2ZNF24CTCFTAL1MEIS2CBFA2T3IKZF1RXRAPKNOX1ELF1NFIC
GH02J100213 - 2:100213886:T:C 0.1371 Enhancer - eQTLs chr2:100213751-100214968
MAXRAD21ESR1RXRAHNF4AEP300SP1YY1KDM1AHNF4AARID3ARESTRXRAJUNDGABPASP1RAD21CEBPBESR1EP300MAXZBTB33ATF3FOXA2NR2F2SMC3EGR1FOXA1SPI1CTCFTBX3XRCC5TCF7HNF4GBHLHE40NCOR1FOSL2POLR2AEP300
GH02J100393 - 2:100394208:A:G 1.1096 Enhancer Elite eRNA_co-expression chr2:100393874-100396016
PAX8IKZF2MTA2MLLT1MEF2BEBF1BHLHE40ZNF687POLR2APAX5ZNF592ATF7RFX5CREB1CREMNBNTAF1E4F1YY1POU2F2BCL3ZNF384PKNOX1SMARCA5ATF7ARID3AZBTB40HDAC2MTA2DPF2IKZF1JUNBATF2NFATC3SKILGATAD2BNBNJUNDEP300YY1BCL11ATBPCUX1MLLT1RELBSPI1TBX21PKNOX1TRIM22NFICETV6BCL3POU2F2EBF1ZBED1IKZF2ELF1BATFRUNX3ARNTSMAD1TCF12IRF4MEF2BCREMMXI1TAF1STAT3EEDPAX5ETS1BHLHE40MAXSMC3ZNF687ZNF592