GWAS Annotated: BRF1

Gene: BRF1 general transcription factor IIIB subunit

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
BRF1GH14J104665-14:104667849:G:A1.3208Enhancer459EliteTF_co-expressionchr14:104665046-104667973ENSR14_7866NL, ENSR14_93JJN8, ENSR14_5WLNWW
SIN3ABCORNEUROD1CHD4PHF20CDC5LSRFTRIM24MLLT1SMARCA5BMI1ZNF639SP1E4F1KDM1APLRG1RFX1ZNF444TCF12NBNCTCFFOXA1TRIM22NFIBPKNOX1RELBPOLR2AESRRAZNF512BZNF207HES1HDAC2CTBP1RAD51CREB1SUZ12ZNF8NCOA3SOX6ZBTB7BFOXP1DPF2ZNF282ZNF687ZNF592IKZF1ZKSCAN1MTA2ATF7ZBTB1MTA3FOXK2ZBTB33POLR2GEP300FOXA2ELF1SPI1FOXA1CHD1TBX21RXRACTCFFOSL2ZNF217RBFOX2TBX3IKZF1HNRNPLLZNF579ASH2LGATAD2BHNRNPLKDM4AHNRNPKZFXYY1TRIM22RAD21MAXPOLR2ASMC3AGO2TAF15PCBP1RBM39AGO1NCOR1CREMFIP1L1ZHX2TAF1TBPTCF7L2CCAR2ESR1ETS1EP300TBL1XR1NR2F6TCF7NR3C1ZBTB7ATFAP4RCOR1JUNDSOX13HDAC2SKIFOXA2HNF4GRXRABHLHE40XRCC5FOXA1FOSL2YY1HNF4AFOSJUNDCHD4ATF3EGR1BCL3PBX3CTCFJUND
BRF1GH14J105058-14:105063669:G:T1.2410Promoter/Enhancer676EliteeRNA_co-expressionchr14:105058160-105068209ENSR14_BQSXJ, ENSR14_5WP777, ENSR14_93JNW8, ENSR14_CDFGX, ENSR14_854DTR, ENSR14_BQSZD, ENSR14_5WP89K, ENSR14_854DWR, ENSR14_CDFH9, ENSR14_5WP8JB, ENSR14_93JNZG, GPR132_1, GPR132_2
POLR2AIKZF1CTCFUSF1USF2SPI1POLR2APAX5POLR2APOU2F2ETV6MAXSPI1TCF12ZNF687RUNX3SMARCA4BHLHE40MLLT1SMAD5POU2F2SMAD1ATF7TBX21NFICRELBIKZF1IKZF2GATAD2BTCF12E2F8MTA2MEF2BBACH1ZBED1EBF1SKILETS1IRF4EEDTRIM22DPF2BCL3RUNX3PBX3PAX5TAF1TCF12MEF2AATF2SMARCA5USF2ZNF316MLLT1POLR2AEEDMXI1NBNBHLHE40ZNF143ZNF384SPI1MTA2CHD4ARNTRELBZNF217SMARCA5IKZF1RUNX3IKZF2DPF2IKZF1POLR2ARAD51MITFTRIM22BHLHE40PKNOX1CBFA2T2BACH1MYBTBPUSF2CREMUSF1RUNX3EP300PAX5NFYBPBX3SMARCA5FOSL2ZBTB7ASMAD5NFATC1RESTNFATC3ZBED1ATF3E2F1SKILESRRAYY1ELF1E4F1ATF7MEF2AIKZF1CBFBRELBTRIM22RUNX3ARID3ASPI1JUNBBCL3MTA2TBL1XR1ETV6IRF4EP300NFICEEDBHLHE40RUNX1PAX5IKZF2ATF2SRFTBX21CTCFMXI1BCL11AMEF2BGATAD2BCREMJUNDPKNOX1MEF2CNBNFOSBATFTAF1KLF5ETS1MEIS2STAT3TBPSIN3ADPF2EBF1SMAD1POLR2GZNF207MAXZNF143ZNF687BACH1RCOR1RFX5USF2TAF1YY1BACH1IKZF2MTA3ZNF687ATF2CREMCBFBMAXIKZF1TRIM22CTCFSMAD5ZNF143MTA2BHLHE40RAD21ZNF592EEDMEF2BRUNX3CUX1ARID3ARXRARCOR1EBF1DPF2GATAD2BPOLR2AEBF1NFATC1IKZF1CBFBATF2BACH1BHLHE40CREMZNF687IRF4EEDRAD51PAX5MAXBCL11AIKZF2SPI1RELBFOSNFICRUNX3USF2BATFUSF1
BRF1GH14J105090-14:105091838:C:T1.6889Promoter/Enhancer470EliteTF_co-expressionchr14:105090266-105094665ENSR14_5WPDLK, ENSR14_5WPDMT, ENSR14_5WPDRN, ENSR14_BQT5C, ENSR14_93JP8T, ENSR14_786T2M, ENSR14_5WPF5Q, ENSR14_93JP93, ENSR14_5WPF7N, ENSR14_BQT5L, ENSR14_5WPF8J
CTCFTCF12SIX5NRF1SREBF1ZNF592ELK1SKIATF3ESRRAHNRNPLLSUZ12NR2F2EEDCTBP1ZNF207SIN3AHNF4APOLR2AHNRNPLIKZF1RB1XRCC5TRIM22RXRANR2F6MAXSP1RFX5GATAD2BSMARCA5BHLHE40MTA1RUNX3MYCYY1SMC3HCFC1RAD21JUNDZBTB7AGATA3ZNF217JUNZNF143ELF1ZMIZ1NR3C1BACH1GATA2MTA3RESTNR2F1MAFKZEB2ZNF444ZNF407TAF15ESR1YY1RBM39NFE2L2ZBTB7BNR2F2ETS1NR2F6RXRABCL3MTA1GABPAHNF4ASP1XRCC5NFIBTCF7L2HNRNPLLZBTB33FOSHNRNPLPOLR2AZNF579HCFC1RESTESRRAZHX2SKIMBD2HNF4GTCF12JUNDMYCPKNOX1ATF3NR3C1TBPCTBP1ELF1RAD21RCOR1EGR1RBFOX2SIN3AFOXA1EP300TFAP4ZNF217ZFXCLOCKSMARCE1HES1FOXA2HDAC2CUX1GATAD2BTCF7TBX3GATA3MNTSTAT3ESR1MAXNCOA3CREB1FOSL2DPF2PHF8TAF1EZH2EP300SREBF1NR3C1USF2ZNF263HNRNPLPOLR2AHNF4AZBTB33NBNPHF8TAF1BCL3STAT1TRIM22KLF5ZNF207NRF1KDM4AZNF687BACH1CTCFRBFOX2POLR2GELF1ETS1BHLHE40ASH2LCTCFRBBP5SUZ12ZFXPHF8GATAD2BSIN3AKDM5BGMEB1IKZF1IKZF2RBM39TAF1ZNF217L3MBTL2NBNRBFOX2BACH1HNRNPLRB1TRIM22ZNF207STAT1POLR2GCTBP1SMARCA5ZNF143GABPASP1EP300DPF2YY1RAD21ZBTB7AMEF2BSMC3JUNDCREMTAF15MAXELK1MXI1SMARCA4NRF1EGR1ETS1KDM4ASTAT3E2F6RUNX3ZNF316USF2SREBF1ZBTB40ZNF263GATA3
BRF1GH14J105119-None0.0000Enhancer130-C-HiCchr14:105119023-105119213ENSR14_BQT97
GATA3JUNDZNF217FOSFOXA1CUX1ZNF579ELF1NEUROD1ZHX2DPF2POLR2ARCOR1CTBP1ESRRASMARCE1NR3C1CTCFESR1MYC
BRF1GH14J105137-14:105137078:C:A0.0435Enhancer24-eRNA_co-expressionchr14:105137066-105137217--
BRF1GH14J105212-14:105212794:G:A1.4899Enhancer71-Distancechr14:105212317-105213913ENSR14_854J49
SMARCA4
BRF1GH14J105216-14:105216960:G:C0.8795Enhancer91-Distancechr14:105216609-105219049-
POLR2GCTCFEP300POLR2AAGO2NR3C1
BRF1GH14J105220-14:105221426:C:G0.5637Enhancer99-Distancechr14:105220357-105221632-
RCOR1GATA2RESTMXI1MYC
BRF1GH14J105223-14:105223693:G:A0.2535Enhancer36-Distancechr14:105223011-105223931ENSR14_854JB7
PAX5
BRF1GH14J105224-14:105224929:T:A1.2414Enhancer71-Distancechr14:105224735-105225390-
MYCCTBP1GATA3
BRF1GH14J105247-14:105249178:C:T0.6834Promoter/Enhancer581EliteDistancechr14:105247651-105250379ENSR14_93JQWL, ENSR14_BQTXW, ENSR14_5WQDT5, ENSR14_93JQX6, BTBD6_1
AGO2RBM22TCF12POLR2GHDAC2BCORSMARCA5KDM1AZMYM3RBM25ZNF143RBBP5CLOCKZNF207ZBTB40ZNF444ZFXRCOR1IKZF1ELF1POLR2AZBTB33TRIM22KDM4APHF8SIN3AZNF574ZNF217SMC3TBPRAD21RFX1MNTRFX5SMARCE1CTCFZNF687MXI1NRF1EP300CREB1CTBP1CREMTAF1BACH1PAX5EGR1BHLHE40MYCZSCAN29CHD1DPF2GATAD2BSMARCA5PHF8BACH1FOXM1YY1MYCBHLHE40L3MBTL2POLR2A
BRF1GH14J105252-14:105252969:G:A0.6485Enhancer71-C-HiC,Distancechr14:105252565-105253779-
ZNF263POLR2A
BRF1GH14J105254-14:105255266:G:C0.4293Enhancer36-C-HiC,Distancechr14:105254844-105255757ENSR14_BQTZW
FOSZNF316EEDPOLR2ACTCF
BRF1GH14J105257-14:105257741:G:C0.0219Enhancer98EliteC-HiC,Distancechr14:105257216-105258179-
POLR2GPOLR2A
BRF1GH14J105258-None0.0000Enhancer173EliteC-HiC,Distancechr14:105258903-105259093ENSR14_93JR2W
DPF2FOSL2ZNF592POLR2AZNF687CREB1BHLHE40MYCMNTFOXA1CEBPBFOSCTBP1ATF7ESRRA
BRF1GH14J105261-14:105261860:C:T1.4571Enhancer1-C-HiC,Distancechr14:105261632-105262396-
TAF15
BRF1GH14J105270-14:105271448:A:G0.3997Enhancer56-C-HiC,Distancechr14:105270930-105272013ENSR14_5WQJP6
MXI1CTCFRAD21
BRF1GH14J105273-14:105273140:G:A0.6390Enhancer188EliteC-HiC,Distancechr14:105273043-105273193ENSR14_854KCZ
MAXSIN3ACTCFZNF217GATA3CLOCKCTBP1DPF2ZNF579SMARCE1PKNOX1GATAD2BMNTMYC
BRF1GH14J105275-None0.0000Enhancer118EliteC-HiC,Distancechr14:105275212-105277600ENSR14_93JR7Q
EP300CEBPB
BRF1GH14J105279-14:105279905:C:T0.8942Enhancer56-C-HiC,Distancechr14:105279209-105281057-
BCL3NFATC1BCL3POLR2AAGO2
BRF1GH14J105281-None0.0000Enhancer183EliteC-HiC,Distancechr14:105281883-105282093ENSR14_BQW5Q, ENSR14_5WQLGP
CTCFRCOR1SIN3AMAFKRAD21BHLHE40TRIM22LEF1RESTSMC3TCF7ZNF143TCF7L2
BRF1GH14J105284-14:105283245:A:G0.5031Enhancer36-C-HiC,Distancechr14:105283126-105283253-
PKNOX1
BRF1GH14J105283-14:105284186:C:G0.4296Enhancer36-C-HiC,Distancechr14:105283381-105284838--
BRF1GH14J105286-14:105286890:T:C0.8079Enhancer82-C-HiC,Distancechr14:105286703-105288202-
PRDM10AGO2MXI1CTCFRAD21RXRASP1EGR1HNF4A
BRF1GH14J105290-14:105290607:C:T0.6784Enhancer229EliteC-HiC,Distancechr14:105290435-105292000ENSR14_5WQMZP, ENSR14_5WQN2F, ENSR14_5WQN32
SP1RXRAHNF4ACEBPBIKZF1ZNF282NFIBBHLHE40CTCFRAD21RUNX3
BRF1GH14J105292-14:105293469:G:C1.3101Enhancer373EliteC-HiC,eRNA_co-expression,Distancechr14:105292365-105295248ENSR14_93JRDR, ENSR14_BQW7J
FOSSPI1EEDPOLR2AIKZF1BHLHE40RBFOX2ZNF263MTA3EBF1ZNF143MEF2BSMARCA4SPI1POLR2ACTCFIKZF2IKZF1SIN3APKNOX1GATA1RFX1MXI1EP300EEDRCOR1RFX5GATA2RAD21BMI1
BRF1GH14J105299-14:105300790:C:A1.5415Promoter/Enhancer626EliteDistancechr14:105299496-105302052ENSR14_93JRGS, ENSR14_93JRH2, ENSR14_5WQPPM, ENSR14_854KZ6, ENSR14_93JRH7, PACS2_4, BRF1_1, BRF1_3, BRF1_2
GATA3KDM1ATRIM28CBX3ZNF184TBX21NBNZMYM3SMARCA5RCOR1GMEB1TCF12NFICRBM25EBF1ASH2LMEF2BRUNX3MAXRBFOX2SKILHDAC1CTBP1POLR2GTAF15SAFBNCOA6IKZF1ZFXZNF143KDM4AAGO2PHF8POLR2ASIN3AMNTFIP1L1TBPHDAC6SOX6CHD1MYCMXI1RBBP5GATA1DPF2RNF2CTCFRESTBHLHE40GATAD2BKDM5AZNF592TCF12UBTFSREBF1ARNTSIN3BRBM25KDM5BELK1BRCA1EP300LEF1NR3C1ELF1YY1HCFC1SKILCREB3L1L3MBTL2ZNF24JUNDZSCAN29E2F6ZBTB33FOXM1KLF5SP1STAT1SKIKDM4ASMARCA5RB1HNRNPKATF7FUSTAF1BACH1ZNF207TAF7ZNF687ZNF217TRIM22RBM34ARID3ASMAD5BCL11AZBTB7ACREB1EGR1EP400GABPAZNF143SAP30CLOCKHDAC2SUZ12ZNF444PKNOX1RELBPHF20CREMZNF639FOSL2ESRRAHNRNPUL1ZBTB7BMBD2ZNF263BCL3ETV4NBNGATA4KDM4ARUNX3ZBTB7ASMAD5CTBP1GABPB1SPI1EZH2NRF1NFYBIRF1JUNDDPF2TBPBHLHE40TCF12GMEB1RNF2IKZF1ATF7SMARCA4RB1MTA2HES1MTA3ZEB2MGAATF3PHF8BACH1L3MBTL2ESRRAHNRNPLLKDM5BZBTB2ZNF687E4F1NBNZNF143SMARCE1E2F1SMARCA5MAXZBTB40MTA1ZSCAN29LEF1PHB2ZNF639ZNF184ARID1BBCORE2F6ZBTB33ZNF384
BRF1GH14J105303-14:105304342:A:G0.8504Enhancer71-eQTLs,Distancechr14:105303541-105304345ENSR14_854L2W
POLR2AMYCTBPCTCFNR2F1MITF
BRF1GH14J105312-14:105312999:C:T1.5059Promoter/Enhancer575EliteDistancechr14:105312749-105318124ENSR14_BQWBG, ENSR14_5WQRZM, ENSR14_5WQS7K, ENSR14_BQWBM, ENSR14_5WQS89, ENSR14_BQWBW, ENSR14_5WQSMK, PACS2_3, PACS2_1, PACS2_2, BRF1_4
AGO2MYCGATA2MAXZFXAGO2HDAC2NR2F1CTCFRBBP5KDM4AKDM1APOLR2AZBTB33YY1SAP30MGATAF15L3MBTL2RBFOX2PHF8HNRNPKHNRNPLE2F6TAF1ARID3ANRF1POLR2GZBTB7ARB1MAXSMARCE1GABPAEP300JUNDYY1BHLHE40ELF1NFYBPBX3E2F6MAXUSF1IKZF1MYCPOLR2GZFXRBFOX2YY1MYCKDM5BRB1MXI1HDAC1CTBP1CTCFZEB1RAD21AGO2CREB1SAP30BHLHE40CHD1MNTZHX2TAF15SIN3AZNF687PKNOX1ZBTB33SREBF2ZNF316MAFKMAFFZBTB33NFICEP300NR3C1CTCF
BRF1GH14J105323-None0.0000Enhancer191EliteDistancechr14:105323905-105325171ENSR14_93JRPT
MYC
BRF1GH14J105326-14:105327343:C:T0.4487Enhancer183EliteDistancechr14:105326777-105327616ENSR14_BQWDC
POLR2AMLLT1ZBTB33
BRF1GH14J105327-None0.0000Enhancer153EliteDistancechr14:105327623-105327773ENSR14_BQWDC
POLR2AZBTB33
BRF1GH14J105328-None0.0000Enhancer178EliteDistancechr14:105328453-105328873-
MBD2SP1MAXZNF217NR2F2ESRRANCOA3HNF4ARXRAZNF263
BRF1GH14J105329-14:105330341:C:T0.9905Enhancer222EliteDistancechr14:105329745-105331001ENSR14_93JRRM
POLR2GRBM39GABPANR2F2MYCRFX1YY1BMI1ELF1EGR1EP300
BRF1GH14J105332-14:105334369:C:A0.4538Enhancer183EliteDistancechr14:105332198-105337297ENSR14_93JRSQ
CTCFRESTRFX1AGO2RXRAHNF4AMYCPOLR2ACTCFRAD21EGR1EP300SMARCA4AGO2SMARCA4KDM1AMYCZNF263ZMYM3ZBTB7BRBM25CEBPB
BRF1GH14J105340-None0.0000Enhancer125EliteC-HiC,Distancechr14:105340521-105341501ENSR14_BQWGB
RUNX3
BRF1GH14J105346-14:105348717:G:A0.8779Enhancer121-C-HiC,Distancechr14:105346887-105351162-
MYCEP300
BRF1GH14J105351-None0.0000Enhancer331EliteC-HiC,Distancechr14:105351887-105352973ENSR14_CDG8Z, ENSR14_5WR3JN
CTCFESRRAARID1BZNF263NR2F1SP1ZNF217RXRASIN3AXRCC5CBFA2T3ATF4NR2F2CTBP1HNF4AHDAC1NCOA1RAD21TAL1ATF7SKIZNF444NR2F6MYNNMAFFRB1GABPASMC3TRIM22FOSL2CEBPBEGR1MYCNFE2YY1ZNF143ATF2RESTBHLHE40ATF3JUNDCREB1EP300PKNOX1RUNX3MEF2BAGO2EBF1
BRF1GH14J105364-None0.0000Enhancer235EliteDistancechr14:105364023-105365000ENSR14_BQWKN
MXI1BHLHE40EGR1NRF1ZNF263
BRF1GH14J105404-14:105405156:T:C0.0512Enhancer71-C-HiCchr14:105404379-105405268-
L3MBTL2POLR2APKNOX1SPI1POLR2G
BRF1GH14J105562-14:105563387:T:G1.0483Enhancer323EliteTF_co-expressionchr14:105562492-105566111ENSR14_93JW9P
GATAD2BNBNZBTB33CREB1ATF7POLR2APOU2F2MLLT1GATAD2BMTA2TRIM22ARID3AMLLT1IRF4SRFPBX3EGR1NBNRUNX3SRFSRFNFIBZNF579MLLT1NBNSRFTRIM22ATMZNF207SUZ12CREB1CTBP1MTA3E4F1NCOA3ZNF512BNFRKBATF7ZNF8FOXP1GATAD2BZKSCAN1ZBTB1IKZF1ZBTB33ESRRAZNF592PKNOX1PHB2MEF2B
BRF1GH14J105621-None0.0000Enhancer6-eRNA_co-expressionchr14:105621618-105621912--
BRF1GH14J105688-14:105689295:C:T1.0210Enhancer279EliteTF_co-expressionchr14:105688677-105692219ENSR14_CDH69, ENSR14_CDH6L
ATF7NBNSRFRELBZNF444DPF2CREB1PKNOX1NFIBRCOR1CTBP1SP1HES1ZNF512BZNF8ZNF592RFX1ZBTB7BZKSCAN1GATAD2BMLLT1ZBTB1E4F1NCOA3NEUROD1MTA3ZBTB33IKZF1ZNF207FOXA1ESRRASUZ12POLR2ANBNCDC5LSUZ12ZNF8CREB1MTA3SRFESRRAZNF512BFOXA2ZBTB1PKNOX1ATF7TRIM22FOXK2FOXA1CTBP1RFX1ZBTB7BZNF592SP1ZKSCAN1NCOA3ZBTB40ZNF444RUNX3SIX4ZBTB33HES1E4F1GATAD2BZNF592CTCFMLLT1MBD2TBX3FOXK2CREB1RAD51ZBTB7BNFIBARID3AZBTB33MTA2ZNF512BESRRAZNF639ZNF8RCOR1CTBP1NBNSUZ12MTA3NCOA3SP1ZKSCAN1TRIM22ZNF207POLR2AGATAD2B