GWAS Annotated: CDH12

Gene: cadherin 12

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
CDH12GH05J021774-5:21774214:G:A1.7311Enhancer111--chr5:21774150-21775637ENSR5_9BMCM
FOSSTAT3POLR2ATBPMYC
CDH12GH05J021807-5:21807251:C:T1.1795Enhancer36--chr5:21807199-21807401ENSR5_9BMNX
GATA2STAT3FOSGATA3CEBPB
CDH12GH05J021808-5:21808166:C:G1.1834Enhancer111--chr5:21808071-21808201ENSR5_9BMP8
RFX1EP300CREB1SPI1ZNF217GATA3FOXA1CTBP1DPF2STAT3FOS
CDH12GH05J021823-None0.0000Enhancer1--chr5:21823356-21823694-
NR2F2POLR2AGATA2STAT3FOS
CDH12GH05J022015-5:22015067:T:C1.7944Enhancer1-Distancechr5:22015000-22015400--
CDH12GH05J022181-5:22189791:G:A1.7003Enhancer1-Distancechr5:22181536-22191675-
SMARCA4SMARCA4
CDH12GH05J022191-5:22194230:G:A1.6942Enhancer1-Distancechr5:22191848-22197228-
FOSFOXA1SMARCA4
CDH12GH05J022212-None0.0000Promoter94-Distancechr5:22212758-22212818ENSR5_B6F2M, CDH12_1
EP300
CDH12GH05J022372-5:22372668:T:C1.6506Enhancer36-eQTLs,Distancechr5:22372121-22372797-
FOS
CDH12GH05J022560-5:22560445:T:G0.1749Enhancer126-Distancechr5:22560079-22560629ENSR5_9BXQT
FOSSTAT3CEBPBBHLHE40MYC
CDH12GH05J022596-5:22596604:A:G2.4777Enhancer82-Distancechr5:22596138-22597161ENSR5_9BZ6D
GATA2MAFKJUNDSTAT3FOSCEBPBMYC
CDH12GH05J022620-5:22621172:A:G2.5957Enhancer56-Distancechr5:22620666-22621841-
FOSEP300NANOGHDAC2TCF12
CDH12GH05J022648-5:22648759:TTA:T0.2210Enhancer121-Distancechr5:22648671-22649583ENSR5_9BZPL
GATA3CTBP1TCF7L2CUX1NFIBATF7DPF2MBD2FOSSMARCE1FOXA1ZNF24CTCF
CDH12GH05J022852-5:22852875:C:G0.4526Promoter164-Distancechr5:22852800-22853001ENSR5_9C3WJ
MXI1DPF2RAD21ASH2LCTCF
CDH12GH05J022853-5:22853344:T:C1.3228Promoter346EliteDistancechr5:22853199-22853600ENSR5_9C3WL, ENSR5_9C3WP, CDH12_2
MXI1DPF2RAD21ASH2LCTCFSMC3SIN3AKDM4ASMARCA4L3MBTL2EP300SAP30
CDH12GH05J022928-None0.0000Enhancer71-Distancechr5:22928917-22929451-
HNRNPKTRIM28ASH2LPOLR2AMAFKSRFTBPTAF1