GWAS Annotated Elements: CDH12

Gene: cadherin 12

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH05J021774 - 5:21774214:G:A 1.7311 Enhancer - - chr5:21774150-21775637
FOSSTAT3POLR2ATBPMYC
GH05J021807 - 5:21807251:C:T 1.1795 Enhancer - - chr5:21807199-21807401
GATA2STAT3FOSGATA3CEBPB
GH05J021808 - 5:21808166:C:G 1.1834 Enhancer - - chr5:21808071-21808201
RFX1EP300CREB1SPI1ZNF217GATA3FOXA1CTBP1DPF2STAT3FOS
GH05J021823 - None 0.0000 Enhancer - - chr5:21823356-21823694
NR2F2POLR2AGATA2STAT3FOS
GH05J022015 - 5:22015067:T:C 1.7944 Enhancer - Distance chr5:22015000-22015400 -
GH05J022181 - 5:22189791:G:A 1.7003 Enhancer - Distance chr5:22181536-22191675
SMARCA4SMARCA4
GH05J022191 - 5:22194230:G:A 1.6942 Enhancer - Distance chr5:22191848-22197228
FOSFOXA1SMARCA4
GH05J022212 - None 0.0000 Promoter - Distance chr5:22212758-22212818
EP300
GH05J022372 - 5:22372668:T:C 1.6506 Enhancer - eQTLs,Distance chr5:22372121-22372797
FOS
GH05J022560 - 5:22560445:T:G 0.1749 Enhancer - Distance chr5:22560079-22560629
FOSSTAT3CEBPBBHLHE40MYC
GH05J022596 - 5:22596604:A:G 2.4777 Enhancer - Distance chr5:22596138-22597161
GATA2MAFKJUNDSTAT3FOSCEBPBMYC
GH05J022620 - 5:22621172:A:G 2.5957 Enhancer - Distance chr5:22620666-22621841
FOSEP300NANOGHDAC2TCF12
GH05J022648 - 5:22648759:TTA:T 0.2210 Enhancer - Distance chr5:22648671-22649583
GATA3CTBP1TCF7L2CUX1NFIBATF7DPF2MBD2FOSSMARCE1FOXA1ZNF24CTCF
GH05J022852 - 5:22852875:C:G 0.4526 Promoter - Distance chr5:22852800-22853001
MXI1DPF2RAD21ASH2LCTCF
GH05J022853 - 5:22853344:T:C 1.3228 Promoter Elite Distance chr5:22853199-22853600
MXI1DPF2RAD21ASH2LCTCFSMC3SIN3AKDM4ASMARCA4L3MBTL2EP300SAP30
GH05J022928 - None 0.0000 Enhancer - Distance chr5:22928917-22929451
HNRNPKTRIM28ASH2LPOLR2AMAFKSRFTBPTAF1