GWAS Annotated: CDH13

Gene: cadherin 13

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
CDH13GH16J082584-16:82585061:C:G0.7175Enhancer36-C-HiC,Distancechr16:82584714-82586112ENSR16_937R3D
RCOR1MAFKUSF2CEBPBFOS
CDH13GH16J082605-16:82606961:C:T0.4222Enhancer71-C-HiC,Distancechr16:82605824-82607226ENSR16_937R9C
KDM1ACHD7HDAC2RBBP5NANOGCTCFYY1ZNF143SP1EP300USF1
CDH13GH16J082626-16:82634790:C:T1.4479Promoter/Enhancer689EliteeQTLs,eRNA_co-expression,Distancechr16:82626395-82636735ENSR16_937RH8, ENSR16_937RHF, ENSR16_5PFPZJ, ENSR16_84FL2N, ENSR16_CB7DB, ENSR16_937RJQ, ENSR16_5PFQQ7, ENSR16_BLDR7, CDH13_1
EZH2RNF2EZH2SUZ12POLR2AASH2LTAF1KDM4ATAF1CTCFRAD21SMC3SUZ12RBBP5EP300SIN3APOLR2ASMARCA4FOSSTAT3RAD51USF1FOSPOLR2ACTCFSTAT3RESTJUNDCTCFRAD21SMC3FOSFOXA1CTCFYY1FOSZNF143RAD21SMC3STAT3FOSPOLR2ACTCFFOSSMARCA4MYCGATA2JUNDSTAT3SMARCA4RUNX3
CDH13GH16J082636-16:82640197:A:C1.2340Enhancer314EliteDistancechr16:82636918-82641196ENSR16_BLDRS, ENSR16_BLDS2, ENSR16_5PFS46
ATF2CREB1JUNBJUNDFOSATF7GATA2BHLHE40MAFKNFE2L2BATFSTAT3EBF1CEBPBCTCFYY1SP1RXRARESTZNF444HNF4GNR2F6SMC3TRIM22HNF4AZNF143RAD21SRFFOXA2FOXA1IRF4ARID3AXRCC5CTCF
CDH13GH16J082644-16:82644270:C:T1.4155Enhancer63EliteDistancechr16:82644115-82644749ENSR16_937RNB
ASH2LNANOG
CDH13GH16J082648-16:82649846:C:T1.4070Enhancer1-C-HiC,Distancechr16:82648852-82650078-
FOS
CDH13GH16J082650-16:82651054:C:T0.3956Enhancer98EliteC-HiC,Distancechr16:82650915-82651065-
EP300RUNX3
CDH13GH16J082651-16:82651258:A:G1.3085Enhancer433EliteC-HiC,Distancechr16:82651218-82658096ENSR16_BLDTR, ENSR16_BLDW3, ENSR16_BLDW9, ENSR16_84FLM6
EP300ZNF143ZNF207CHD4IKZF1EEDELF1MLLT1NFICNFYBPOLR2ANFYAIKZF2IRF3RCOR1ATF7TBL1XR1TBPIRF4EP300SPI1E2F4CREMDPF2SMC3ZBTB40RFX5RESTMEF2BSRFBHLHE40ZNF687CREB1ASH2LRBBP5MTA2SMARCA5ZBED1BMI1CBFBARID3ARUNX3TCF12ZNF592CEBPBPKNOX1MEF2AEEDBCL11APBX3ATF4SPI1ZNF24NR2F6FOXA2FOXA1TAF1CEBPBMLLT1IKZF1STAT3POLR2AASH2LSRFNBNIKZF2BMI1RELBMTA2ZSCAN29RUNX3NFICEEDGATAD2BGABPATBPTAF1JUNDKLF5ZBED1RCOR1MEF2BUSF2BHLHE40CBX5SP1ATF3TBL1XR1FOSL2EP300TCF7SIN3ABCL3EBF1ATF7ARNTBACH1ZNF217ATF2IRF4ARID3AJUNBMTA3ELK1FOSTRIM22ZNF143YY1PAX5MYCNFE2L2MEF2CETS1BATFGATA2STAT5ACBFBTBX21CREMSKILJUNSTAT3DPF2CEBPBPOU2F2BCL11ANFATC3RAD21TCF12ELF1RESTETV6SMC3NFATC1MEF2APKNOX1POLR2ASRFFOSTRIM28CEBPBIKZF2STAT5APKNOX1NFATC1CBFBGATA2ETV6EEDJUNDBCL3POU2F2RESTRUNX3NFICSIN3AATF2TBL1XR1ATF7RCOR1MEF2CSTAT3TAF1PAX5TCF12MEF2ABHLHE40BCL11ARAD21CREMJUNBBATFCTCFEP300JUNDSTAT3FOSCEBPBATF4GATA2
CDH13GH16J082659-16:82659859:C:T1.1974Enhancer271EliteC-HiC,Distancechr16:82659634-82662182ENSR16_BLDWX
NFICRUNX3PKNOX1SRFCTCFPOLR2A
CDH13GH16J082671-16:82672166:C:T1.8155Enhancer36-Distancechr16:82671795-82675236ENSR16_5PG2K9
CTCFZNF143SMC3RAD21FOSEP300EP300JUND
CDH13GH16J082682-16:82683395:C:A0.9890Enhancer36-Distancechr16:82682631-82683598-
NR2F2
CDH13GH16J082693-16:82694526:C:G0.2565Enhancer71-Distancechr16:82693841-82695300ENSR16_BLF4W
ATF7ATF2MAFKJUNDFOS
CDH13GH16J082698-16:82700459:T:C3.3116Enhancer291EliteeQTLs,C-HiC,Distancechr16:82698973-82702276ENSR16_BLF5N, ENSR16_937S9P
ATF3YY1SP1JUNDTBPATF7STAT3FOSEP300FOXA2FOXA1CEBPBMYCBHLHE40RUNX3EBF1MTA3NFICBHLHE40GABPABCL3CEBPBSPI1RUNX3JUNDGATA2BATFFOSMEF2ANR2F2CEBPBMNTUSF1NFYB
CDH13GH16J082734-16:82734394:G:A0.5051Enhancer222EliteeQTLs,Distancechr16:82734003-82737111ENSR16_BLFBT
EP300IRF4CBX5MEF2ABATFRESTNFYBPKNOX1PBX3BHLHE40CUX1MEF2AEBF1MEF2B
CDH13GH16J082747-16:82748324:T:C0.8136Enhancer118EliteeQTLs,Distancechr16:82747611-82748576ENSR16_937SRC
CTCFSMC3RAD21
CDH13GH16J082756-16:82756103:T:C0.0971Enhancer71-Distancechr16:82756000-82756801ENSR16_937STN, ENSR16_76TDJ2
CTCFMAFKJUNDFOSPOLR2AGATA2BHLHE40
CDH13GH16J082760-16:82761164:C:T0.7384Enhancer173EliteDistancechr16:82760953-82762261ENSR16_937SX6, ENSR16_84FNTP
RXRASP1FOSEP300YY1ATF3JUNDHNF4ACEBPBJUNDGABPAHNF4AHNF4GMAXEGR1SP1RXRA
CDH13GH16J082776-16:82777249:A:G0.4307Enhancer56-Distancechr16:82776115-82777323-
MNTEP300SPI1CREB1ATF2STAT3CEBPB
CDH13GH16J082781-16:82783658:A:G0.8823Enhancer153EliteDistancechr16:82781800-82783761ENSR16_BLFKP
POLR2AHDAC2RAD21SP1EP300RXRATCF12NANOGMAXHNF4A
CDH13GH16J082858-16:82858156:T:C1.4060Enhancer1-Distancechr16:82858115-82858225--
CDH13GH16J082866-16:82867939:T:G0.6964Enhancer71-Distancechr16:82866683-82868928-
JUNDFOSATF7ATF2
CDH13GH16J082874-16:82874923:A:G0.2839Enhancer1-Distancechr16:82874715-82874985--
CDH13GH16J082888-16:82888845:T:C0.4649Enhancer71-Distancechr16:82888314-82889316ENSR16_937WB2
TRIM28EP300ZNF263RESTRAD21
CDH13GH16J082924-16:82924512:C:G0.8457Enhancer56-Distancechr16:82924455-82924585-
TRIM28ZNF263
CDH13GH16J082936-16:82936363:A:C0.8560Enhancer82-Distancechr16:82936328-82938025ENSR16_BLGF2
RESTPOLR2ABHLHE40EP300FOSGATA2JUNDMAFKNFE2L2
CDH13GH16J082944-16:82946225:G:A1.0707Enhancer56-Distancechr16:82944804-82946565-
POLR2AMAXGATA2NR2F2RAD21FOSATF7
CDH13GH16J082946-16:82946626:C:A0.0839Enhancer1-Distancechr16:82946575-82946673--
CDH13GH16J082990-16:82991680:C:T1.7050Enhancer105-eQTLs,Distancechr16:82990870-82994533-
ZFXSPI1MNTMAFKZNF316MAFFC11orf30CTCFZFXSMARCA4REST
CDH13GH16J082994-16:82995103:T:G1.2972Enhancer256EliteDistancechr16:82994970-82996924ENSR16_BLGPJ
GATA2RAD21NR2F2JUNDEP300YY1FOSTAF1NFE2L2CEBPBCREB1CTBP1CTCFIRF5MCM3ATF7ARNTHDAC2RAD51NCOA4
CDH13GH16J083053-16:83054166:T:A0.8679Enhancer1-Distancechr16:83053895-83054768-
FOS
CDH13GH16J083095-16:83096402:A:G1.5498Enhancer1-Distancechr16:83095635-83096806ENSR16_84FZ38
RXRAHNF4ACEBPB
CDH13GH16J083100-None0.0000Enhancer36-Distancechr16:83100855-83101005-
MYCEBF1SRFJUNBSTAT3FOSCEBPB
CDH13GH16J083102-None0.0000Enhancer6-Distancechr16:83102915-83103266--
CDH13GH16J083136-16:83137950:C:T0.6217Enhancer235EliteDistancechr16:83136955-83138289ENSR16_BLHGZ
ETV4NR2F6NR2F2RCOR1JUNDMAXSKITCF7TBX3MYCFOSMAFFFOXA1XRCC5RXRAFOXA2EP300FOSL2TFAP4
CDH13GH16J083143-None0.0000Enhancer1-Distancechr16:83143895-83144125ENSR16_BLHHX
RCOR1FOSBHLHE40
CDH13GH16J083187-16:83187542:G:T0.4168Enhancer71-Distancechr16:83187495-83187645ENSR16_9382HH
FOSSTAT3JUNDCEBPBBATFMAFK
CDH13GH16J083215-16:83215665:G:C0.0333Enhancer111-Distancechr16:83215515-83215665ENSR16_9382RL, ENSR16_5PKGRC
CTCFXRCC5RAD21ZBTB33SMC3KLF16ZNF143RB1RXRARESTYY1EGR1NANOG
CDH13GH16J083304-16:83305560:C:G1.0002Enhancer133EliteDistancechr16:83304994-83306118ENSR16_9383QJ
FOSJUNDRCOR1CEBPBGATA2USF1
CDH13GH16J083306-None0.0000Enhancer1-Distancechr16:83306156-83306188--
CDH13GH16J083336-16:83338200:A:AC0.5867Enhancer140-Distancechr16:83336087-83340168ENSR16_93844N
MAFKFOSMAFFGATA2POLR2ATBPSTAT3MYCJUNDSMARCA4RAD21POLR2ASMARCA4GATA2NFE2L2FOSNRF1
CDH13GH16J083343-16:83343596:A:C0.4444Enhancer158-Distancechr16:83343186-83345383ENSR16_BLJKW
ESRRAPOLR2ARCOR1GATA2MAFKBHLHE40JUNDATF2FOSSTAT3EP300MYCCEBPBCREB1
CDH13GH16J083402-16:83403688:G:T0.4987Enhancer91-Distancechr16:83402368-83404613ENSR16_5PLMS4, ENSR16_9384RT, ENSR16_9384S4
CTCFRAD21FOSSTAT3EP300RAD21RFX1JUNDSTAT3FOSJUNDMYCSTAT3NFE2L2FOS
CDH13GH16J083447-None0.0000Enhancer110-Distancechr16:83447050-83447128ENSR16_84G8K3
CTCFRAD21SMC3FOXA1ZNF143ZNF384
CDH13GH16J083512-16:83513423:G:A0.9774Enhancer71-Distancechr16:83512664-83513914ENSR16_BLKHC
ATF3GATA2FOSJUNDJUN
CDH13GH16J083529-16:83530762:C:G0.9062Enhancer1-Distancechr16:83529855-83531304ENSR16_BLKKT-
CDH13GH16J083573-16:83574713:C:T0.6104Enhancer71-Distancechr16:83573900-83575182ENSR16_9386MG
CREB1MAFKMAFFFOSJUNDMYCSTAT3BHLHE40CEBPBCREB1ATF2
CDH13GH16J083602-16:83603523:A:C0.3540Enhancer71-Distancechr16:83602431-83603578-
CHD7HDAC2YY1
CDH13GH16J083648-16:83648404:G:T0.1151Enhancer1--chr16:83648395-83648545-
MNT
CDH13GH16J083653-16:83653444:GT:G0.8888Enhancer82--chr16:83653192-83654149ENSR16_9387HF
EP300SMC3ZBTB40
CDH13GH16J083676-None0.0000Enhancer56--chr16:83676175-83676325-
ZNF24SMARCA4
CDH13GH16J083682-16:83682457:T:C0.7369Enhancer20--chr16:83682220-83682644-
CREB1
CDH13GH16J083688-16:83689906:C:T0.5073Enhancer170--chr16:83688955-83690072ENSR16_BLLFT
PKNOX1IKZF1CBFA2T3KDM1ATAL1TEAD4NR2F2ATF4CBFA2T2FOSBHLHE40MEIS2JUNDATF2EEDATF3MYCEP300RCOR1BCL11AARID3ASTAT3JUNMEF2AHDAC1MEF2CRUNX3BATFHES1JUNBCEBPBATF7SRF
CDH13GH16J083699-None0.0000Enhancer1--chr16:83699095-83699245--
CDH13GH16J083701-16:83701510:C:T0.2052Enhancer168--chr16:83701435-83701585ENSR16_938828
RESTMIER1HDAC2RFX5AFF1GATAD2ACHAMP1EHMT2RCOR1MYCSIN3ACBX3CREMZNF143
CDH13GH16J083705-16:83706574:T:A1.3812Enhancer36--chr16:83705536-83707333ENSR16_93883H, ENSR16_93883M
RBM25YY1
CDH13GH16J083717-16:83718169:A:T1.4989Enhancer167Elite-chr16:83717245-83718787ENSR16_84GGCM, ENSR16_93886Z
CTCFRESTZNF143ZKSCAN1RAD21FOSRXRA
CDH13GH16J083726-16:83727752:A:G0.5251Enhancer153Elite-chr16:83726800-83727925ENSR16_93889M
HMBOX1RESTCEBPBSPI1EP300
CDH13GH16J083732-None0.0000Enhancer9--chr16:83732495-83732863--
CDH13GH16J083743-16:83743660:T:A0.0703Enhancer74--chr16:83743398-83743780-
ATF2ATF7KDM1A
CDH13GH16J083744-16:83744333:T:C0.7235Enhancer167Elite-chr16:83744250-83745215ENSR16_BLLPS
EP300MAFKETS1MAFFFOSFOSL2RAD21SP1JUNDCTCFTBX3RXRAMAXSPI1
CDH13GH16J083747-16:83747257:T:A0.2557Enhancer13--chr16:83747052-83747389--
CDH13GH16J083756-16:83756566:A:T0.3491Enhancer9--chr16:83756458-83756843--
CDH13GH16J083762-16:83762650:G:A0.6191Enhancer46--chr16:83762380-83762660-
ZFXFOXA1
CDH13GH16J083768-16:83769555:T:A0.6717Enhancer161Elite-chr16:83768824-83770388ENSR16_9388PW
RFX1SRFFOSASH2LGATA2MAFKSPI1NANOGEGR1SP1SRF