GWAS Annotated: CH25H

Gene: cholesterol 25-hydroxylase

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
CH25HGH10J088281-10:88283017:G:T1.0407Enhancer153EliteeQTLschr10:88281308-88283114ENSR10_CBQJ6
MAFKCEBPBFOSL2MYCFOSSTAT3SIN3AFOSL2JUNDFOSMYCSPI1RAD21EBF1
CH25HGH10J088936-10:88937112:G:C0.8258Enhancer36-C-HiCchr10:88936911-88937663ENSR10_5QWRSL
ETV6POLR2ACTCFMAFKMAFF
CH25HGH10J088939-10:88937938:T:C0.7671Enhancer36-C-HiCchr10:88937816-88938793-
MAFKMAFF
CH25HGH10J088946-10:88946996:G:GT0.1640Enhancer1-C-HiCchr10:88946988-88947555-
EP300
CH25HGH10J088948-None0.0000Enhancer56-C-HiCchr10:88948684-88949393-
CREB1POLR2AHNF4APOLR2AEP300
CH25HGH10J088949-10:88951986:G:A0.7807Promoter/Enhancer633EliteeQTLs,eRNA_co-expressionchr10:88949907-88954174ENSR10_93BB92, ENSR10_CBSBK, ENSR10_84LLK8, ENSR10_93BB9P, ACTA2_1, FAS_3
CEBPBSPI1ATF3NR2F2POLR2ACTCFZNF263RESTTAF1EP300ESR1YY1JUNDRXRAMAXRAD21SRFHNF4ASP1NR2F2MYCFOSMXI1NR3C1CEBPBRCOR1GATA2SIN3AESR1GATA3USF1EP300POLR2AJUNDTAF1RCOR1SIN3AEP300SP1NR2F2EP300L3MBTL2SPI1
CH25HGH10J088988-10:88996754:T:C0.9948Promoter/Enhancer686EliteC-HiCchr10:88988928-88997555ENSR10_BMMSR, ENSR10_84LMDM, ENSR10_BMMSZ, ENSR10_93BBPD, ENSR10_93BBPL, ENSR10_84LMGC, ENSR10_93BBQG, FAS_4, FAS_2, FAS_1, ACTA2_2
SP1HNRNPKZNF143MEF2BMTA2EBF1PKNOX1TBX21PBX3CTCFJUNDATF7MAXHNF4AATF2TFAP4ATF3GABPASP1POLR2AFOSGATA2EP300MYCTBPCREMCEBPBSTAT3CTCFTAF1ZNF143RBM22NBNMTA2YY1ETV6DPF2PCBP1RELBRXRAATF2SP1IKZF1SRFGATA3NR3C1PAX5SMC3STAT3TBL1XR1ARNTEBF1EZH2CBFBSAP30MXI1SPI1ASH2LBACH1BHLHE40IKZF2RUNX3PKNOX1ZBED1SMAD5HNRNPLMLLT1FOSSMARCA5RESTZBTB33SIN3APBX3MAXIRF4ATF7POU2F2CHD1HNF4ARBFOX2CTCFMEF2BTCF12UBTFPHF8CEBPBETS1ZNF207RBM39KDM4AZFXMYCE2F6GATAD2BAGO2HNRNPLLZNF263L3MBTL2ARID3ACTCFIKZF2TAF15SMC3ZBTB7AEP300BACH1EGR1CHD1ETV6PAX5ATF2SPI1ETS1CREMMAFKNRF1ELF1DPF2EBF1POU2F2ZNF687JUNBGATA3RESTSKILZNF384TBPSRFRAD21SMAD5TRIM22NFATC3FOSSTAT3BATFWRNIP1CHD4RUNX3MLLT1NBNZBED1FOXA1NFICSMAD1ASH2LYY1TAF7L3MBTL2NFYBMAFKE2F4SIN3BGATA1MAFFZNF24ZBTB33HDAC2CBFBSMARCA5MXI1RCOR1KDM1ABCORBHLHE40FOXA1RESTZMYM3RELBGATA3BRCA1FOXM1ZNF143SPI1ZNF217RUNX3TBX21RBM25SKILTRIM22ZNF687ARNTBACH1SKILCUX1NFYBWRNIP1IKZF1MAFKRELBMYCMAFFTRIM22POLR2AEP300RAD51MEF2BZBTB40PAX8MLLT1NBNCBFBIKZF1POLR2ATBX21ZNF217SMARCA5DPF2TRIM22IKZF2NFATC3SMAD5RB1SKILSMAD1PKNOX1ZNF687E2F8BACH1TAF1RELBTBPZSCAN29ELF1EBF1TCF7EP300ATF7MEF2AMTA2BCL11ASRFPOLR2ATBPTCF7ZNF687IKZF1GATAD2BBHLHE40FOSGATA1WRNIP1MLLT1ZBTB33POLR2ARAD51MXI1MTA2POLR2ATBX21ELF1RUNX3SPI1ATF7ATF2
CH25HGH10J088999-10:89002108:T:C0.3181Enhancer345EliteC-HiCchr10:88999178-89002970ENSR10_93BBR8, ENSR10_84LMLB
POLR2AZBTB40EBF1STAT3FOSCEBPBMLLT1POLR2AEEDPKNOX1RUNX3BATFZNF384IKZF1CEBPBNR2F2ATF3ATF4RFX1IKZF2EEDNFICTCF12RUNX3
CH25HGH10J089020-10:89020107:G:T0.0604Enhancer1-C-HiCchr10:89020103-89020253--
CH25HGH10J089029-10:89030250:G:A0.4401Enhancer213EliteC-HiCchr10:89029712-89030281ENSR10_BMN3H, ENSR10_5QXDR3
CTCFHNF4AZNF263MTA2HNF4GYY1SKILIKZF2TRIM22TBX21RAD21PKNOX1ZNF143IRF4SMC3PBX3FOXA1SIN3ARESTEP300
CH25HGH10J089030-10:89032211:A:G0.7128Enhancer245EliteC-HiCchr10:89030990-89033219ENSR10_BMN3T, ENSR10_5QXF7C
EBF1CTCFNFICATF2NFATC1NBNATF7RUNX3FOSL2SMC3ARID1BFOSIKZF1JUNDPOU2F2MAFKMAFFRELBEP300BCL11ANFE2L2TBX21BACH1C11orf30NFE2GATA2STAT3MYCSPI1DPF2MTA2ZNF316CEBPBNR3C1NFATC3MLLT1CTCFRAD51MAFKMAFF
CH25HGH10J089065-None0.0000Enhancer36-C-HiCchr10:89064763-89064913ENSR10_93BCH5
EP300CTCFSP1NR2F2
CH25HGH10J089064-10:89065085:G:A0.6258Enhancer36-C-HiCchr10:89064923-89065113ENSR10_93BCH5
EP300CTCFSP1NR2F2
CH25HGH10J089086-10:89087812:C:T0.9896Enhancer312EliteC-HiC,eRNA_co-expressionchr10:89085727-89088072ENSR10_93BCPF, ENSR10_93BCPK
NFRKBBRD4CTCFATF4ATF3NANOGCTBP1TCF12ATF7EP300STAT3ATF2TBPTRIM24CEBPBJUNDMEIS2ESRRAFOSRESTCBFA2T2RAD51L3MBTL2MAXSOX6POLR2AZNF318SMARCA4BHLHE40MITFUSF1USF2RBFOX2RBM25
CH25HGH10J089100-None0.0000Enhancer36-C-HiCchr10:89100803-89100953ENSR10_84LPQ2
CEBPBEP300
CH25HGH10J089102-None0.0000Enhancer6-C-HiCchr10:89102828-89102872--
CH25HGH10J089117-10:89118139:G:A0.8249Enhancer36-eQTLschr10:89117541-89118895ENSR10_BMNJ9
JUNDSTAT3FOSBHLHE40
CH25HGH10J089122-10:89123164:G:A0.5726Enhancer220EliteC-HiCchr10:89122354-89123905ENSR10_93BD4S
FOSSTAT3EP300ATF2GATA3ETV6EP300MAXSPI1
CH25HGH10J089147-10:89147473:G:A0.1750Enhancer1-C-HiCchr10:89147323-89147890ENSR10_BMNNH
MYCSTAT3FOSCEBPB
CH25HGH10J089151-None0.0000Enhancer36-C-HiCchr10:89151903-89152093ENSR10_93BDFB
CREB1FOS
CH25HGH10J089163-10:89164501:A:G1.9562Enhancer305EliteeQTLschr10:89163263-89164600ENSR10_93BDJM, ENSR10_93BDJR
IKZF1IKZF2GABPATBX21ZBED1SKILEEDATF7NFICBATFMEF2ACREMETV6NFATC1CTCFRESTETS1RXRAHNF4AJUNBPOU2F2ATF2SP1RUNX3ATF3RAD21STAT3MYCFOSJUNDFOXA2EP300POLR2ASPI1CEBPB
CH25HGH10J089171-10:89171845:T:C1.8196Enhancer1-eQTLs,C-HiCchr10:89171756-89173057ENSR10_84LR99, ENSR10_84LR9J
FOS
CH25HGH10J089203-10:89203473:CCA:C1.9735Enhancer1-eQTLs,Distancechr10:89203383-89203533--
CH25HGH10J089206-10:89206789:C:T1.7854Promoter/Enhancer414EliteeQTLs,Distancechr10:89206443-89208565ENSR10_93BF2D, ENSR10_5QZJB6
EZH2RNF2SUZ12KDM4AMXI1MNTRBM39CTCFRAD21POLR2AMAXEP300SP1GABPAUSF1CBX2SMC3STAT3MXI1NR3C1L3MBTL2CEBPBFOXA1RUNX3HNRNPLLTAF15EEDKDM1AHDAC2POLR2ARBBP5ASH2LIKZF1KDM4ARNF2CREB1ATF2ZNF263
CH25HGH10J089226-10:89227807:T:G0.8871Enhancer36-C-HiCchr10:89226729-89228485-
MAFKMAFF
CH25HGH10J089228-10:89229129:A:G0.0761Enhancer36-C-HiCchr10:89228957-89229457-
ZNF143
CH25HGH10J089241-10:89241369:T:C0.3892Enhancer402EliteC-HiCchr10:89241002-89243886ENSR10_BMP77, ENSR10_93BFDM
GATA1TAL1TEAD4CBFA2T3ARID1BCTCFNFICMEF2BCREMMTA2EBF1RUNX3RELBJUNBSMARCA4BCL11ABATFSKILCHD1HNF4GNR2F2ZNF687HNF4AIKZF1RXRAFOSASH2LMAXSP1EP300SPI1KDM1ACEBPBMYCSTAT3ZNF143MNTFOXA2PKNOX1ZNF384FOXA1USF1TCF7ATF2TBL1XR1MEF2BMTA2IKZF1SP1RELBMEF2ARUNX3BCL11ANFICEP300IKZF2MTA3ETV6EEDETS1NANOGSPI1TCF12JUNB