GWAS Annotated: CHL1

Gene: cell adhesion molecule L1 like

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
CHL1GH03J000196-None0.0000Promoter164-Distancechr3:196546-196606ENSR3_944T, CHL1_3
RNF2EZH2SUZ12POLR2AMXI1EP300GATA2EBF1
CHL1GH03J000198-None0.0000Promoter191-Distancechr3:196713-196773ENSR3_7BFP, CHL1_1
RNF2EZH2SUZ12POLR2AMXI1EP300GATA2EBF1TBPRAD21IKZF1
CHL1GH03J000197-3:197562:C:G0.8531Promoter/Enhancer276EliteDistancechr3:197074-198201ENSR3_9452, ENSR3_538T6, ENSR3_9459
EZH2SUZ12MXI1IKZF1KDM4AGATAD2BBHLHE40ASH2LPOLR2AKDM4ARB1ZNF263CTCFRNF2SUZ12SMC3KDM4ARBBP5MXI1POLR2AGATAD2BBHLHE40BACH1ZNF217IKZF1SMARCA5
CHL1GH03J000203-None0.0000Promoter94-Distancechr3:203786-203846CHL1_2-
CHL1GH03J000212-3:212519:C:T0.5588Enhancer158-Distancechr3:212477-212627-
NFATC3HSF1ATF7RELBELF1IKZF1CREB1MTA2NBNTRIM22RUNX3ATF2ETV6IKZF2MLLT1JUNBCREMBHLHE40EP300PKNOX1DPF2ZNF687SMAD1EEDTAF1TBPTBX21
CHL1GH03J000242-3:243604:G:T0.5750Enhancer56-C-HiC,Distancechr3:242857-244193ENSR3_B3B8
MAFKTRIM28MAFFNFE2L2FOSEP300STAT3RCOR1FOS
CHL1GH03J000244-3:244340:A:G0.5340Enhancer36-C-HiC,Distancechr3:244197-244347-
RCOR1FOSCEBPB
CHL1GH03J000264-3:264907:C:T0.3266Enhancer226-Distancechr3:264257-265353ENSR3_B3FB
HDAC1ZKSCAN1ASH2LSIN3AKDM1ABCL3ATF3GABPARESTFOXA2ZBTB33EHMT2EP300HNRNPLLHNF1AGATA4FOSCREMFOXP1MYCARID3ANR2F6RCOR1TFAP4ETS1ZNF24HDAC2TBL1XR1CEBPBTCF12HNF4ASTAT3SP1NCOR1RXRASMC3FOXA1NR3C1TCF7JUNDSMARCC2FOSL2ETV4ELF1SKITBX3SMARCE1ZHX2SOX13CREB1ATF2MAFKMAFFCBX2LCORLNFICNFIB
CHL1GH03J000270-3:271776:T:C0.4022Enhancer36-C-HiC,Distancechr3:270959-271996-
IKZF1
CHL1GH03J000273-None0.0000Enhancer56-Distancechr3:273713-274474-
IKZF1IKZF2NBN
CHL1GH03J000277-3:279644:A:G0.3444Enhancer235EliteDistancechr3:277548-279710ENSR3_CQ5
ETV6IKZF1JUNBZNF592BHLHE40RAD51TBPSPI1IKZF1GATAD2BE2F8RELBMEF2BZNF217SMAD1DPF2IKZF2ARNTTRIM22NFICKLF5NBNMLLT1MTA2SKILJUNBTBX21ATF7EEDBMI1EP300ZNF143RB1BACH1MEF2CEBF1IRF4BHLHE40NFATC3ZNF592YY1BATFPKNOX1BCL11AARID3ACEBPBPAX5SMARCA4TCF12ASH2LTBPCTCFEP300BATFSPI1ETV6EBF1MAFKPAX8ZBTB40IKZF2IKZF1
CHL1GH03J000290-None0.0000Enhancer144EliteDistancechr3:290157-290307ENSR3_B3K2
ZNF384IKZF1SKILNFATC3BMI1NFICBACH1DPF2IKZF2RELBATF7RUNX3MEF2AMTA2EP300SPI1EBF1BATFTBX21ETV6
CHL1GH03J000297-3:297375:T:C0.2821Enhancer1-Distancechr3:297208-298125-
GATA2
CHL1GH03J000354-None0.0000Enhancer143-Distancechr3:354477-354627ENSR3_548RF
CTCFSMC3NBNRAD21RCOR1RESTZNF444GATA1TRIM22WRNIP1IRF4ZNF143CBX3GATA2YY1GATA3MCM2SMARCA5RB1FOXA1CBX5
CHL1GH03J000355-3:355650:G:C0.1773Enhancer36-eQTLs,Distancechr3:355111-356142ENSR3_548W4, ENSR3_95RZ
GATA1FOSEP300CEBPBBHLHE40