GWAS Annotated: CKAP4

Gene: cytoskeleton associated protein 4

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
CKAP4GH12J105933-12:105935111:T:C1.0444Enhancer332EliteeRNA_co-expressionchr12:105933303-105936823ENSR12_BR2M5, ENSR12_93K39F, ENSR12_BR2M9, ENSR12_93K39S
YY1TAF1TCF7L2SP1CREB1SIN3ANR3C1FOSRAD21RESTRCOR1TCF12JUNDSMC3CEBPBMYCNFE2L2BHLHE40MAFKSTAT3FOSL2GATA2CTCFFOSCEBPB
CKAP4GH12J106073-12:106080082:C:G1.1722Enhancer378EliteeQTLschr12:106073416-106085979ENSR12_CDJ78, ENSR12_BR3F3, ENSR12_CDJ7M, ENSR12_5WXNGQ, ENSR12_93K4SX, ENSR12_93K4T5, ENSR12_CDJ7W
MTA2MEF2BNFICIKZF1RUNX3NBNARID3AATF2RELBTBX21SKILDPF2EP300PAX5BHLHE40TCF12RCOR1JUNBJUNDEBF1IKZF2BCL11AMLLT1STAT3ATF7ZNF217SRFPKNOX1BATFBMI1IRF4ESRRANFATC3MXI1BACH1TBPSMARCA5POLR2ASRFMTA2EP300EBF1JUNDSIN3ARESTPKNOX1TRIM28ZNF263TCF7L2POLR2AGATA2L3MBTL2BHLHE40RCOR1FOXK2ARNTCTBP1RAD21EP300MEIS2ZKSCAN1FOSBHLHE40MYCTCF7L2JUNDATF4ATF2NR2F2RXRASP1EP300USF2USF1CTCFMAFKC11orf30MAFFZNF316NFE2L2JUNDNR2F2NR2F6RXRAUSF1SP1RESTRAD21MAXZBTB33JUNDFOXA1EP300ATF3HNF4ARXRAHNF4GRAD21ZNF263EP300TRIM28GABPABCL3YY1ATF3JUNDFOSL2PKNOX1FOSSIN3ATCF7L2TAF1ESR1NR3C1SP1TCF12CTCFPOLR2ARESTCTBP1RELBIKZF1IKZF2NFICNFATC3ATF2ATF7SKILGABPATBL1XR1MTA2BMI1RUNX3ARID3ATCF12CREMEBF1EP300BACH1IRF4BHLHE40JUNBDPF2JUNDTBX21BATFBCL11A
CKAP4GH12J106244-12:106249226:C:A0.6574Promoter/Enhancer679EliteDistancechr12:106244812-106250476ENSR12_BR4B6, ENSR12_BR4B9, ENSR12_93K6LP, ENSR12_93K6LS, ENSR12_5WZPZK, ENSR12_93K6M5, ENSR12_CDJMT, ENSR12_5WZQCP, CKAP4_1
PKNOX1JUNDFOSFOSL2SP1ZNF384DPF2ZBTB33L3MBTL2POLR2ACTCFEP300STAT3TCF7L2MYCCEBPBFOSSTAT3NFE2L2SIN3AEZH2RBM39ZFXHNRNPLLHNRNPLPHF8EP300L3MBTL2TAF1AGO2CTCFPOLR2AZNF263RESTNRF1KDM4ARAD21TCF7L2EGR1HNRNPLLIKZF1ZNF143YY1BHLHE40ARNTGATAD2BSIN3ADPF2ZBTB7ASKIELF1MXI1FOXM1L3MBTL2E2F6MYCMAXZFXHNRNPKSP1RBM39KDM4AMEF2BIKZF2TAF1EBF1MAXRXRAZEB1HNF4AYY1RAD21RESTFOSRCOR1CEBPBZNF579FOXA1FOXA2ZKSCAN1ZNF316CTCFPOU2F2
CKAP4GH12J106251-12:106251869:A:G0.1340Enhancer206EliteDistancechr12:106251122-106252365ENSR12_93K6N6
POLR2ACTCF
CKAP4GH12J106254-12:106254999:C:G1.0339Enhancer133-Distancechr12:106254782-106255032ENSR12_93K6P3
ESR1JUND
CKAP4GH12J106269-None0.0000Enhancer164-Distancechr12:106269262-106269392-
CTBP1HMBOX1PKNOX1ZNF639SMARCE1SMARCA4ESRRARNF2ZKSCAN1C11orf30TAL1HDAC1TCF12KDM1AJUNDNCOR1ZNF316NFE2NR2F1CUX1MAFFCBFA2T3MAFKARID1BNFICMEIS2DPF2HES1SOX6GATA1HDAC2ZBTB40
CKAP4GH12J106270-None0.0000Enhancer22-Distancechr12:106270022-106270100--
CKAP4GH12J106274-None0.0000Enhancer6-Distancechr12:106270320-106270445--
CKAP4GH12J106271-None0.0000Enhancer1-Distancechr12:106271342-106271492--
CKAP4GH12J106272-12:106271797:G:A0.4594Enhancer36-Distancechr12:106271682-106271832-
HNF4A
CKAP4GH12J106273-12:106274194:G:A0.6557Enhancer320EliteDistancechr12:106273832-106275867ENSR12_93K6WS
TCF7CREMASH2LEHMT2POLR2ATFAP4NR2F6YY1JUNDBHLHE40RESTNCOR1TAF1HNRNPUL1GABPAZBTB33ETV4FOXA2RXRAFOXA1SKITBPATF3MAXRAD21SP1ELF1EGR1ARID3AKDM1AEP300ZNF384HNF4AIKZF1HNF1ABATFEBF1
CKAP4GH12J106280-12:106280157:G:A0.1813Enhancer16-Distancechr12:106280041-106280399-
SP1RFX1RAD21MAFK
CKAP4GH12J106282-None0.0000Enhancer225-Distancechr12:106282442-106282652ENSR12_BR4HJ, ENSR12_5WZZ2Z
CTCFTRIM28ZNF263ZNF217ZNF143TRIM24CBX1NFXL1RAD21SETDB1YY1RB1TRIM22SMC3ZNF280AJUNKDM1ACBX5JUNDFOSRESTCBX3RXRAFOXA2ATF3EGR1ZBTB33FOXA1SP1HNF4AMAXEP300HNF1AARID3ANRF1RCOR1TFAP4ETS1ATF7HDAC1ETV4CREB1SKIFOXP1GATA4BHLHE40CREMHDAC2LCORLNCOR1ASH2LMAFKTBX3NR2F6FOSL2HNF4GZBTB7A
CKAP4GH12J106283-None0.0000Enhancer231-Distancechr12:106282672-106282692ENSR12_BR4HJ
CTCFTRIM28ZNF263ZNF217ZNF143TRIM24CBX1NFXL1RAD21SETDB1YY1TRIM22SMC3ZNF280AJUNKDM1ACBX5JUNDFOSRESTRXRAFOXA2ATF3EGR1ZBTB33FOXA1SP1HNF4AMAXEP300HNF1AARID3ANRF1RCOR1TFAP4ETS1ATF7HDAC1ETV4CREB1SKIFOXP1GATA4BHLHE40CREMHDAC2LCORLNCOR1ASH2LMAFKTBX3NR2F6FOSL2HNF4GZBTB7ASIN3ATCF12FOXK2TBL1XR1TCF7
CKAP4GH12J106284-12:106284796:C:A0.0673Enhancer219-Distancechr12:106284040-106285576-
SMARCC2ASH2LEP300KDM1ATBX3NR2F6CREB1HNF1ASKIGATA4FOXA2HDAC2HNF4GRESTARID3AFOXP1TFAP4RXRATBL1XR1HNF4ASOX13ETV4JUNDCREMSMARCE1ETS1TCF7FOXK2FOXA1BHLHE40SP1TCF12GATA2FOSL2PKNOX1MEIS2ZKSCAN1
CKAP4GH12J106286-12:106289937:C:T0.6759Enhancer456EliteDistancechr12:106286965-106290007ENSR12_855D4M, ENSR12_BR4JF
CHD4RESTKDM1AMNTATF3BCL3ASH2LSMARCC2E2F1JUNDHMBOX1ZSCAN29ZNF316HDAC1NCOA2ARID3ASMARCA4BRD4RNF2FOSFOXA2PKNOX1FOXK2ATF4LEF1TAF9BZNF217MAXSKIRCOR1TEAD4JUNBARID1BSP1MYCZEB2ZNF24ZNF318TBPPAX8HDAC3CREB1NEUROD1HNF1AATF7ETS1DPF2FOSL2ATF2HDAC2SMARCE1RBFOX2CREMJUNTFAP4SOX13FOXA1EP300EP400BMI1SOX6TRIM24BHLHE40HSF1STAT3CEBPBMEIS2FOSL1GATA2CBFA2T3SIN3AGATA3YY1SIX5ZNF592BRD9PRDM10L3MBTL2CLOCKZNF687MGANFRKBIKZF1EHMT2EP300TRIM24CEBPBZMYM3
CKAP4GH12J106291-None0.0000Enhancer117-Distancechr12:106291402-106291650-
MYCFOXA1FOXA2EP300CEBPBFOSSTAT3
CKAP4GH12J106294-None0.0000Enhancer1-Distancechr12:106294954-106295527--
CKAP4GH12J106295-12:106295742:AT:A0.1850Enhancer301EliteDistancechr12:106295686-106297209ENSR12_BR4KJ
SIN3AFOXA1KDM1AARID3ACUX1RFX1GATA3MNTBHLHE40BMI1ZNF217ETS1SP1TBX3FOXA2CREB1TCF12CLOCKMYCSTAT3ATF7JUNDEP300FOSCTBP1USF2FOXA1SMARCE1MAFKESRRAMAFFFOSL2MAFKMAFFZNF316C11orf30
CKAP4GH12J106297-None0.0000Promoter/Enhancer156EliteDistancechr12:106297885-106297945TCP11L2_2
TAF1SP1RAD21
CKAP4GH12J106299-12:106300221:A:G0.3997Promoter/Enhancer742EliteDistancechr12:106299520-106305193ENSR12_855DCZ, ENSR12_BR4L7, ENSR12_5X248H, ENSR12_BR4LF, ENSR12_CDJRR, ENSR12_5X24MG, TCP11L2_3, TCP11L2_1
GATA1ARID1BPKNOX1NCOR1CBFA2T2TAL1EP300CEBPBZNF592RNF2ARID1BCBFA2T2CBFA2T3TEAD4ATF3SOX6MITFZEB2TFAP4NFE2FOSJUNDFOSL2BHLHE40EP300JUNEP300KDM1AMGAMNTZNF274L3MBTL2CREB3L1NBNNRF1MXI1POLR2ACHD1CTCFTCF12SP1E4F1IKZF2PYGO2SMARCA4ZNF687HMBOX1CBFA2T3FOXA1SKILTBPMTA2DPF2ATF7GATA1FOXA2XRCC5TAF9BARID1BMEF2BTBX21ZSCAN29MTA3TAL1KDM4AFOXK2NCOR1ZNF282SMARCC2SUZ12CHAMP1UBTFARNTSKIMAXSIN3ACTBP1ELF1MYCCBFA2T2ELF4AFF1RELBATF3NFATC3ZEB2NR2F6IKZF1ETV6CBX3RUNX3BMI1E2F8ZNF24RAD51SMARCE1BRD9ESRRAHDAC1NFICZNF579RESTTRIM24ETS1EHMT2ZNF639ATF4HES1MLLT1RNF2TEAD4ZNF318ZKSCAN1SOX6IRF1HDAC2ZNF143E2F7RLFMEIS2GATAD2BMYNNTRIM22PRDM10MBD2ATF2PHF21APMLNEUROD1ZBED1TBL1XR1EBF1LEF1STAT2TCF7STAT1KLF16ZBTB5NCOA1STAT5ABHLHE40NR2F2RCOR1MEF2AFOSL1TRIM28PKNOX1NFE2PHF8EGR1GABPAPHF20RUNX1MITFZNF217HDAC3JUNDFOXM1GATA2GMEB1ZBTB7ABCORZHX1RB1SREBF1NR2F1PHB2MTA1SAP30GABPB1GATAD2ACC2D1ADACH1CREMRBFOX2ZBTB2BACH1SAFBHNRNPLLPCBP1SIN3AFIP1L1CTCFEP300SMARCA4EP400NR2F2KDM5AMNTATF7SPI1RESTNFICPRDM10SP1FOXA1ELF4TAF1MAXMLLT1ARNTELF1FOXA2FOXK2E4F1CHD1ATF3RELBCREMRB1EGR1E2F8NFATC3NBNKLF5YY1BHLHE40GABPARNF2SREBF2FOXP1SKILNCOR1ZNF217PKNOX1HDAC3CLOCKZNF444JUNDJUNTBPGMEB1TBX21CDC5LETV4ASH1LMCM7MEF2BHCFC1TRIM22NFRKBE2F7CREB1MBD2SOX6TBX3E2F1FOSL2ZNF24MXI1POLR2AZNF207TRIM28TBL1XR1SIN3BNUFIP1RUNX3ZNF639BRD9MEIS2IRF1ELK1FOSSREBF1RFX5NR3C1STAT1TCF12TAL1PAX5MYCIRF4ARID3AMAFFDNMT1GATA4RBFOX2SKIMCM2BRCA1SIX5RCOR1ASH2LRXRAZNF143USF1IRF3TFAP4ZBTB40TAF15MTA2NR2F6HDAC1GABPB1GATA3ZBTB5IKZF1TRIM24EBF1ZSCAN29ETS1FOXM1NCOA1MIER1POLR2GSAP30DPF2GATAD2BCTBP1L3MBTL2SMC3ZFP91NR2F1AGO1PHF8UBTFEEDIKZF1KDM4AUSF1AGO2ZFXRBBP5HNRNPLEGR1GATA2SMARCA5PTBP1BRD4SAFBKDM5BMGASMAD1E2F6MTA1MXI1RAD21SOX6ESRRANFICTAF1IKZF2CBX1MAXRFX1SKITBL1XR1BMI1TCF12RXRASP1JUNDNBNELF1MYCTFAP4MNTEGR1ZBTB7ANR3C1STAT3BHLHE40ZNF274RFX5POU2F2FOXA2POLR2AZMYM3
CKAP4GH12J106305-12:106305679:T:G0.5223Enhancer125EliteDistancechr12:106305502-106305975-
POLR2ASTAT3FOSCTCFCEBPB
CKAP4GH12J106306-12:106307180:T:C0.8050Enhancer133EliteDistancechr12:106306746-106309108-
GATA3HNF4AFOXA2FOXA1POLR2A
CKAP4GH12J106309-12:106309938:G:C0.1832Enhancer206EliteDistancechr12:106309219-106310545ENSR12_BR4MH
POLR2A
CKAP4GH12J106311-12:106311459:C:T0.3157Enhancer98EliteDistancechr12:106311200-106312000-
ATF7
CKAP4GH12J106315-12:106316112:CT:C0.1843Enhancer36-Distancechr12:106315986-106318083-
CTCFZMYM3RBM25MYCFOS
CKAP4GH12J106318-12:106318704:T:C0.1142Enhancer1-Distancechr12:106318261-106318807--
CKAP4GH12J106321-12:106322271:C:G0.1468Enhancer91-Distancechr12:106321074-106322624-
BHLHE40C11orf30ZNF316MAFKMAFFMITF
CKAP4GH12J106327-12:106327234:C:T0.1062Enhancer36-Distancechr12:106327198-106327747-
TCF12MYNNESR1
CKAP4GH12J106328-12:106328688:T:C0.2338Enhancer121-Distancechr12:106328562-106329815-
RAD51MAXMITFBHLHE40USF1POLR2APKNOX1
CKAP4GH12J106336-12:106336788:T:C0.4507Enhancer71-Distancechr12:106336673-106337246-
SP1RAD21EGR1HNF4AZNF384
CKAP4GH12J106341-12:106342233:T:G1.0525Enhancer257EliteDistancechr12:106341222-106343961ENSR12_855F94, ENSR12_BR4S9
JUNDGATA3RCOR1GATA2ZNF316BHLHE40CEBPBSKIHNF4APKNOX1CTCFSP1RAD21RFX1JUNDBMI1FOSFOSL2POLR2AMYCEP300HMBOX1
CKAP4GH12J106345-12:106345967:C:T0.7231Enhancer267EliteDistancechr12:106345799-106346092ENSR12_93K7ND, ENSR12_5X2CWL, ENSR12_855FCT
KDM1ACTCFFOSTFAP4XRCC5RESTYY1MAXMYCZBTB33ZNF143RAD21SMARCA5TRIM22SMC3USF2USF1
CKAP4GH12J106645-None0.0000Enhancer151-TF_co-expressionchr12:106645102-106645272ENSR12_BR6FZ
EP300ZNF444SKIFOXA2FOXA1SP1KDM1ACTBP1RAD51GATA3MAXLCORLASH2LMYCBHLHE40ZNF217HDAC2USF1HNRNPLCEBPB