GWAS Annotated Elements: CKAP4

Gene: cytoskeleton associated protein 4

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH12J105933 - 12:105935111:T:C 1.0444 Enhancer Elite eRNA_co-expression chr12:105933303-105936823
YY1TAF1TCF7L2SP1CREB1SIN3ANR3C1FOSRAD21RESTRCOR1TCF12JUNDSMC3CEBPBMYCNFE2L2BHLHE40MAFKSTAT3FOSL2GATA2CTCFFOSCEBPB
GH12J106073 - 12:106080082:C:G 1.1722 Enhancer Elite eQTLs chr12:106073416-106085979
MTA2MEF2BNFICIKZF1RUNX3NBNARID3AATF2RELBTBX21SKILDPF2EP300PAX5BHLHE40TCF12RCOR1JUNBJUNDEBF1IKZF2BCL11AMLLT1STAT3ATF7ZNF217SRFPKNOX1BATFBMI1IRF4ESRRANFATC3MXI1BACH1TBPSMARCA5POLR2ASRFMTA2EP300EBF1JUNDSIN3ARESTPKNOX1TRIM28ZNF263TCF7L2POLR2AGATA2L3MBTL2BHLHE40RCOR1FOXK2ARNTCTBP1RAD21EP300MEIS2ZKSCAN1FOSBHLHE40MYCTCF7L2JUNDATF4ATF2NR2F2RXRASP1EP300USF2USF1CTCFMAFKC11orf30MAFFZNF316NFE2L2JUNDNR2F2NR2F6RXRAUSF1SP1RESTRAD21MAXZBTB33JUNDFOXA1EP300ATF3HNF4ARXRAHNF4GRAD21ZNF263EP300TRIM28GABPABCL3YY1ATF3JUNDFOSL2PKNOX1FOSSIN3ATCF7L2TAF1ESR1NR3C1SP1TCF12CTCFPOLR2ARESTCTBP1RELBIKZF1IKZF2NFICNFATC3ATF2ATF7SKILGABPATBL1XR1MTA2BMI1RUNX3ARID3ATCF12CREMEBF1EP300BACH1IRF4BHLHE40JUNBDPF2JUNDTBX21BATFBCL11A
GH12J106244 - 12:106249226:C:A 0.6574 Promoter/Enhancer Elite Distance chr12:106244812-106250476
PKNOX1JUNDFOSFOSL2SP1ZNF384DPF2ZBTB33L3MBTL2POLR2ACTCFEP300STAT3TCF7L2MYCCEBPBFOSSTAT3NFE2L2SIN3AEZH2RBM39ZFXHNRNPLLHNRNPLPHF8EP300L3MBTL2TAF1AGO2CTCFPOLR2AZNF263RESTNRF1KDM4ARAD21TCF7L2EGR1HNRNPLLIKZF1ZNF143YY1BHLHE40ARNTGATAD2BSIN3ADPF2ZBTB7ASKIELF1MXI1FOXM1L3MBTL2E2F6MYCMAXZFXHNRNPKSP1RBM39KDM4AMEF2BIKZF2TAF1EBF1MAXRXRAZEB1HNF4AYY1RAD21RESTFOSRCOR1CEBPBZNF579FOXA1FOXA2ZKSCAN1ZNF316CTCFPOU2F2
GH12J106251 - 12:106251869:A:G 0.1340 Enhancer Elite Distance chr12:106251122-106252365
POLR2ACTCF
GH12J106254 - 12:106254999:C:G 1.0339 Enhancer - Distance chr12:106254782-106255032
ESR1JUND
GH12J106269 - None 0.0000 Enhancer - Distance chr12:106269262-106269392
CTBP1HMBOX1PKNOX1ZNF639SMARCE1SMARCA4ESRRARNF2ZKSCAN1C11orf30TAL1HDAC1TCF12KDM1AJUNDNCOR1ZNF316NFE2NR2F1CUX1MAFFCBFA2T3MAFKARID1BNFICMEIS2DPF2HES1SOX6GATA1HDAC2ZBTB40
GH12J106270 - None 0.0000 Enhancer - Distance chr12:106270022-106270100 -
GH12J106274 - None 0.0000 Enhancer - Distance chr12:106270320-106270445 -
GH12J106271 - None 0.0000 Enhancer - Distance chr12:106271342-106271492 -
GH12J106272 - 12:106271797:G:A 0.4594 Enhancer - Distance chr12:106271682-106271832
HNF4A
GH12J106273 - 12:106274194:G:A 0.6557 Enhancer Elite Distance chr12:106273832-106275867
TCF7CREMASH2LEHMT2POLR2ATFAP4NR2F6YY1JUNDBHLHE40RESTNCOR1TAF1HNRNPUL1GABPAZBTB33ETV4FOXA2RXRAFOXA1SKITBPATF3MAXRAD21SP1ELF1EGR1ARID3AKDM1AEP300ZNF384HNF4AIKZF1HNF1ABATFEBF1
GH12J106280 - 12:106280157:G:A 0.1813 Enhancer - Distance chr12:106280041-106280399
SP1RFX1RAD21MAFK
GH12J106282 - None 0.0000 Enhancer - Distance chr12:106282442-106282652
CTCFTRIM28ZNF263ZNF217ZNF143TRIM24CBX1NFXL1RAD21SETDB1YY1RB1TRIM22SMC3ZNF280AJUNKDM1ACBX5JUNDFOSRESTCBX3RXRAFOXA2ATF3EGR1ZBTB33FOXA1SP1HNF4AMAXEP300HNF1AARID3ANRF1RCOR1TFAP4ETS1ATF7HDAC1ETV4CREB1SKIFOXP1GATA4BHLHE40CREMHDAC2LCORLNCOR1ASH2LMAFKTBX3NR2F6FOSL2HNF4GZBTB7A
GH12J106283 - None 0.0000 Enhancer - Distance chr12:106282672-106282692
CTCFTRIM28ZNF263ZNF217ZNF143TRIM24CBX1NFXL1RAD21SETDB1YY1TRIM22SMC3ZNF280AJUNKDM1ACBX5JUNDFOSRESTRXRAFOXA2ATF3EGR1ZBTB33FOXA1SP1HNF4AMAXEP300HNF1AARID3ANRF1RCOR1TFAP4ETS1ATF7HDAC1ETV4CREB1SKIFOXP1GATA4BHLHE40CREMHDAC2LCORLNCOR1ASH2LMAFKTBX3NR2F6FOSL2HNF4GZBTB7ASIN3ATCF12FOXK2TBL1XR1TCF7
GH12J106284 - 12:106284796:C:A 0.0673 Enhancer - Distance chr12:106284040-106285576
SMARCC2ASH2LEP300KDM1ATBX3NR2F6CREB1HNF1ASKIGATA4FOXA2HDAC2HNF4GRESTARID3AFOXP1TFAP4RXRATBL1XR1HNF4ASOX13ETV4JUNDCREMSMARCE1ETS1TCF7FOXK2FOXA1BHLHE40SP1TCF12GATA2FOSL2PKNOX1MEIS2ZKSCAN1
GH12J106286 - 12:106289937:C:T 0.6759 Enhancer Elite Distance chr12:106286965-106290007
CHD4RESTKDM1AMNTATF3BCL3ASH2LSMARCC2E2F1JUNDHMBOX1ZSCAN29ZNF316HDAC1NCOA2ARID3ASMARCA4BRD4RNF2FOSFOXA2PKNOX1FOXK2ATF4LEF1TAF9BZNF217MAXSKIRCOR1TEAD4JUNBARID1BSP1MYCZEB2ZNF24ZNF318TBPPAX8HDAC3CREB1NEUROD1HNF1AATF7ETS1DPF2FOSL2ATF2HDAC2SMARCE1RBFOX2CREMJUNTFAP4SOX13FOXA1EP300EP400BMI1SOX6TRIM24BHLHE40HSF1STAT3CEBPBMEIS2FOSL1GATA2CBFA2T3SIN3AGATA3YY1SIX5ZNF592BRD9PRDM10L3MBTL2CLOCKZNF687MGANFRKBIKZF1EHMT2EP300TRIM24CEBPBZMYM3
GH12J106291 - None 0.0000 Enhancer - Distance chr12:106291402-106291650
MYCFOXA1FOXA2EP300CEBPBFOSSTAT3
GH12J106294 - None 0.0000 Enhancer - Distance chr12:106294954-106295527 -
GH12J106295 - 12:106295742:AT:A 0.1850 Enhancer Elite Distance chr12:106295686-106297209
SIN3AFOXA1KDM1AARID3ACUX1RFX1GATA3MNTBHLHE40BMI1ZNF217ETS1SP1TBX3FOXA2CREB1TCF12CLOCKMYCSTAT3ATF7JUNDEP300FOSCTBP1USF2FOXA1SMARCE1MAFKESRRAMAFFFOSL2MAFKMAFFZNF316C11orf30
GH12J106297 - None 0.0000 Promoter/Enhancer Elite Distance chr12:106297885-106297945
TAF1SP1RAD21
GH12J106299 - 12:106300221:A:G 0.3997 Promoter/Enhancer Elite Distance chr12:106299520-106305193
GATA1ARID1BPKNOX1NCOR1CBFA2T2TAL1EP300CEBPBZNF592RNF2ARID1BCBFA2T2CBFA2T3TEAD4ATF3SOX6MITFZEB2TFAP4NFE2FOSJUNDFOSL2BHLHE40EP300JUNEP300KDM1AMGAMNTZNF274L3MBTL2CREB3L1NBNNRF1MXI1POLR2ACHD1CTCFTCF12SP1E4F1IKZF2PYGO2SMARCA4ZNF687HMBOX1CBFA2T3FOXA1SKILTBPMTA2DPF2ATF7GATA1FOXA2XRCC5TAF9BARID1BMEF2BTBX21ZSCAN29MTA3TAL1KDM4AFOXK2NCOR1ZNF282SMARCC2SUZ12CHAMP1UBTFARNTSKIMAXSIN3ACTBP1ELF1MYCCBFA2T2ELF4AFF1RELBATF3NFATC3ZEB2NR2F6IKZF1ETV6CBX3RUNX3BMI1E2F8ZNF24RAD51SMARCE1BRD9ESRRAHDAC1NFICZNF579RESTTRIM24ETS1EHMT2ZNF639ATF4HES1MLLT1RNF2TEAD4ZNF318ZKSCAN1SOX6IRF1HDAC2ZNF143E2F7RLFMEIS2GATAD2BMYNNTRIM22PRDM10MBD2ATF2PHF21APMLNEUROD1ZBED1TBL1XR1EBF1LEF1STAT2TCF7STAT1KLF16ZBTB5NCOA1STAT5ABHLHE40NR2F2RCOR1MEF2AFOSL1TRIM28PKNOX1NFE2PHF8EGR1GABPAPHF20RUNX1MITFZNF217HDAC3JUNDFOXM1GATA2GMEB1ZBTB7ABCORZHX1RB1SREBF1NR2F1PHB2MTA1SAP30GABPB1GATAD2ACC2D1ADACH1CREMRBFOX2ZBTB2BACH1SAFBHNRNPLLPCBP1SIN3AFIP1L1CTCFEP300SMARCA4EP400NR2F2KDM5AMNTATF7SPI1RESTNFICPRDM10SP1FOXA1ELF4TAF1MAXMLLT1ARNTELF1FOXA2FOXK2E4F1CHD1ATF3RELBCREMRB1EGR1E2F8NFATC3NBNKLF5YY1BHLHE40GABPARNF2SREBF2FOXP1SKILNCOR1ZNF217PKNOX1HDAC3CLOCKZNF444JUNDJUNTBPGMEB1TBX21CDC5LETV4ASH1LMCM7MEF2BHCFC1TRIM22NFRKBE2F7CREB1MBD2SOX6TBX3E2F1FOSL2ZNF24MXI1POLR2AZNF207TRIM28TBL1XR1SIN3BNUFIP1RUNX3ZNF639BRD9MEIS2IRF1ELK1FOSSREBF1RFX5NR3C1STAT1TCF12TAL1PAX5MYCIRF4ARID3AMAFFDNMT1GATA4RBFOX2SKIMCM2BRCA1SIX5RCOR1ASH2LRXRAZNF143USF1IRF3TFAP4ZBTB40TAF15MTA2NR2F6HDAC1GABPB1GATA3ZBTB5IKZF1TRIM24EBF1ZSCAN29ETS1FOXM1NCOA1MIER1POLR2GSAP30DPF2GATAD2BCTBP1L3MBTL2SMC3ZFP91NR2F1AGO1PHF8UBTFEEDIKZF1KDM4AUSF1AGO2ZFXRBBP5HNRNPLEGR1GATA2SMARCA5PTBP1BRD4SAFBKDM5BMGASMAD1E2F6MTA1MXI1RAD21SOX6ESRRANFICTAF1IKZF2CBX1MAXRFX1SKITBL1XR1BMI1TCF12RXRASP1JUNDNBNELF1MYCTFAP4MNTEGR1ZBTB7ANR3C1STAT3BHLHE40ZNF274RFX5POU2F2FOXA2POLR2AZMYM3
GH12J106305 - 12:106305679:T:G 0.5223 Enhancer Elite Distance chr12:106305502-106305975
POLR2ASTAT3FOSCTCFCEBPB
GH12J106306 - 12:106307180:T:C 0.8050 Enhancer Elite Distance chr12:106306746-106309108
GATA3HNF4AFOXA2FOXA1POLR2A
GH12J106309 - 12:106309938:G:C 0.1832 Enhancer Elite Distance chr12:106309219-106310545
POLR2A
GH12J106311 - 12:106311459:C:T 0.3157 Enhancer Elite Distance chr12:106311200-106312000
ATF7
GH12J106315 - 12:106316112:CT:C 0.1843 Enhancer - Distance chr12:106315986-106318083
CTCFZMYM3RBM25MYCFOS
GH12J106318 - 12:106318704:T:C 0.1142 Enhancer - Distance chr12:106318261-106318807 -
GH12J106321 - 12:106322271:C:G 0.1468 Enhancer - Distance chr12:106321074-106322624
BHLHE40C11orf30ZNF316MAFKMAFFMITF
GH12J106327 - 12:106327234:C:T 0.1062 Enhancer - Distance chr12:106327198-106327747
TCF12MYNNESR1
GH12J106328 - 12:106328688:T:C 0.2338 Enhancer - Distance chr12:106328562-106329815
RAD51MAXMITFBHLHE40USF1POLR2APKNOX1
GH12J106336 - 12:106336788:T:C 0.4507 Enhancer - Distance chr12:106336673-106337246
SP1RAD21EGR1HNF4AZNF384
GH12J106341 - 12:106342233:T:G 1.0525 Enhancer Elite Distance chr12:106341222-106343961
JUNDGATA3RCOR1GATA2ZNF316BHLHE40CEBPBSKIHNF4APKNOX1CTCFSP1RAD21RFX1JUNDBMI1FOSFOSL2POLR2AMYCEP300HMBOX1
GH12J106345 - 12:106345967:C:T 0.7231 Enhancer Elite Distance chr12:106345799-106346092
KDM1ACTCFFOSTFAP4XRCC5RESTYY1MAXMYCZBTB33ZNF143RAD21SMARCA5TRIM22SMC3USF2USF1
GH12J106645 - None 0.0000 Enhancer - TF_co-expression chr12:106645102-106645272
EP300ZNF444SKIFOXA2FOXA1SP1KDM1ACTBP1RAD51GATA3MAXLCORLASH2LMYCBHLHE40ZNF217HDAC2USF1HNRNPLCEBPB