GWAS Annotated: CNTN4

Gene: contactin 4

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
CNTN4GH03J002097-3:2097878:A:T2.2487Promoter/Enhancer266EliteDistancechr3:2097866-2099551ENSR3_9SH2, ENSR3_9SH7, ENSR3_5HBRW, ENSR3_9SH9, ENSR3_BF8P
RNF2ASH2LCTCFKDM4ARAD21SMC3L3MBTL2POLR2AHNRNPKMXI1NRF1HNRNPLLTAF1SP1RBBP5EP300HDAC2JUNDPHF8EZH2KDM4ASMC3SP1TAF7SUZ12RBM39JUNDCTCFRNF2
CNTN4GH03J002157-3:2157525:A:T0.4037Enhancer6-C-HiC,Distancechr3:2157506-2157712--
CNTN4GH03J002215-None0.0000Enhancer11-C-HiC,Distancechr3:2215880-2215900--
CNTN4GH03J002354-3:2355118:G:C1.2038Enhancer82-Distancechr3:2354405-2356194ENSR3_9X8D
TRIM28CTCFEP300JUNDRAD21FOSSTAT3ATF2CREB1
CNTN4GH03J002421-None0.0000Enhancer91-Distancechr3:2421036-2421126ENSR3_83WW5
ASH2LJUNDEP300RAD21NANOGSP1YY1MYCTCF12USF2
CNTN4GH03J002527-None0.0000Enhancer56-Distancechr3:2527056-2527206ENSR3_93247
NBNRELBCBFBEED
CNTN4GH03J002567-3:2567973:C:T1.0931Enhancer1-Distancechr3:2567107-2568786--
CNTN4GH03J002656-3:2657187:A:G1.3137Enhancer125EliteDistancechr3:2656719-2657525ENSR3_933GQ, ENSR3_933GZ
CEBPB
CNTN4GH03J002657-3:2657645:C:T1.6990Enhancer36-Distancechr3:2657556-2657726ENSR3_933GZ
JUNDNFE2L2FOS
CNTN4GH03J002770-3:2770724:A:G0.3323Enhancer82-Distancechr3:2770676-2770826ENSR3_934NP
TRIM28EP300USF1NANOGCTCF
CNTN4GH03J002773-3:2773466:C:T0.8052Enhancer6-Distancechr3:2773409-2773712--
CNTN4GH03J002774-3:2775632:G:T0.3533Enhancer1-Distancechr3:2774916-2775690--
CNTN4GH03J002855-3:2855718:G:A0.7642Enhancer36-Distancechr3:2855598-2856762ENSR3_5N5S9
CTCFRAD21
CNTN4GH03J002869-3:2871079:G:A1.1797Enhancer105-Distancechr3:2869475-2871836-
SP1JUNDATF3MAXYY1HNF4AHNF4GRXRAFOSL2FOSCREB1
CNTN4GH03J002892-None0.0000Promoter94-Distancechr3:2892187-2892247CNTN4_1-
CNTN4GH03J002895-3:2897050:G:A1.1212Enhancer82-Distancechr3:2895972-2898626-
RAD21HNF4AFOSYY1SP1ATF3RESTHNF4A
CNTN4GH03J002979-3:2979248:G:A0.3180Enhancer1-eQTLs,Distancechr3:2979136-2979286-
CHD7
CNTN4GH03J003031-3:3031228:G:A0.6736Enhancer1-eQTLs,Distancechr3:3031145-3031974-
NR2F2RXRA
CNTN4GH03J003053-3:3053720:G:A0.5494Enhancer91-Distancechr3:3053609-3054948-
DPF2ARID1BATF3CBFA2T3JUNDJUNGATA1MEIS2