GWAS Annotated Elements: CNTN4

Gene: contactin 4

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH03J002097 - 3:2097878:A:T 2.2487 Promoter/Enhancer Elite Distance chr3:2097866-2099551
RNF2ASH2LCTCFKDM4ARAD21SMC3L3MBTL2POLR2AHNRNPKMXI1NRF1HNRNPLLTAF1SP1RBBP5EP300HDAC2JUNDPHF8EZH2KDM4ASMC3SP1TAF7SUZ12RBM39JUNDCTCFRNF2
GH03J002157 - 3:2157525:A:T 0.4037 Enhancer - C-HiC,Distance chr3:2157506-2157712 -
GH03J002215 - None 0.0000 Enhancer - C-HiC,Distance chr3:2215880-2215900 -
GH03J002354 - 3:2355118:G:C 1.2038 Enhancer - Distance chr3:2354405-2356194
TRIM28CTCFEP300JUNDRAD21FOSSTAT3ATF2CREB1
GH03J002421 - None 0.0000 Enhancer - Distance chr3:2421036-2421126
ASH2LJUNDEP300RAD21NANOGSP1YY1MYCTCF12USF2
GH03J002527 - None 0.0000 Enhancer - Distance chr3:2527056-2527206
NBNRELBCBFBEED
GH03J002567 - 3:2567973:C:T 1.0931 Enhancer - Distance chr3:2567107-2568786 -
GH03J002656 - 3:2657187:A:G 1.3137 Enhancer Elite Distance chr3:2656719-2657525
CEBPB
GH03J002657 - 3:2657645:C:T 1.6990 Enhancer - Distance chr3:2657556-2657726
JUNDNFE2L2FOS
GH03J002770 - 3:2770724:A:G 0.3323 Enhancer - Distance chr3:2770676-2770826
TRIM28EP300USF1NANOGCTCF
GH03J002773 - 3:2773466:C:T 0.8052 Enhancer - Distance chr3:2773409-2773712 -
GH03J002774 - 3:2775632:G:T 0.3533 Enhancer - Distance chr3:2774916-2775690 -
GH03J002855 - 3:2855718:G:A 0.7642 Enhancer - Distance chr3:2855598-2856762
CTCFRAD21
GH03J002869 - 3:2871079:G:A 1.1797 Enhancer - Distance chr3:2869475-2871836
SP1JUNDATF3MAXYY1HNF4AHNF4GRXRAFOSL2FOSCREB1
GH03J002892 - None 0.0000 Promoter - Distance chr3:2892187-2892247 -
GH03J002895 - 3:2897050:G:A 1.1212 Enhancer - Distance chr3:2895972-2898626
RAD21HNF4AFOSYY1SP1ATF3RESTHNF4A
GH03J002979 - 3:2979248:G:A 0.3180 Enhancer - eQTLs,Distance chr3:2979136-2979286
CHD7
GH03J003031 - 3:3031228:G:A 0.6736 Enhancer - eQTLs,Distance chr3:3031145-3031974
NR2F2RXRA
GH03J003053 - 3:3053720:G:A 0.5494 Enhancer - Distance chr3:3053609-3054948
DPF2ARID1BATF3CBFA2T3JUNDJUNGATA1MEIS2