GWAS Annotated: COL19A1

Gene: collagen type XIX alpha 1 chain

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
COL19A1GH06J069756-6:69761455:T:C1.1730Enhancer204-C-HiCchr6:69756628-69764421-
CBX5ZNF407TRIM28MITFRBM25PKNOX1ATF3RNF2CEBPBARID1BSMARCE1ARID3APMLCBFA2T3NR2F1HDAC2TAF9BARNTNR2F6EGR1LEF1NCOR1ESRRAKDM1ASMARCA4NCOA1CC2D1AIRF1MEIS2TRIM28FOXA1TCF12NR2C1GMEB1GATA1JUNCBFA2T2HMBOX1CUX1BCORSOX6TRIM24TBL1XR1CHAMP1MYCMYNNDPF2MBD2NR2F2TAL1NCOA2NFICGATAD2BIKZF1CREMJUNDPHB2RCOR1HDAC1NFE2TEAD4RESTHDAC3MNTYY1STAT5AEP300MTA2KLF16DACH1FOXM1EHMT2ZNF316HMBOX1GATA1DPF2SMARCA4C11orf30ARID1BMAFFHNF4AMEIS2THRANRF1ZBTB33
COL19A1GH06J069812-6:69813190:G:C2.2916Enhancer290EliteeQTLs,C-HiCchr6:69812015-69817180ENSR6_843FC8, ENSR6_932P6Q, ENSR6_932P7G, ENSR6_843FF8
GATA3DPF2CUX1SMARCE1ZNF217CTBP1MTA3DPF2RELBNFICATF2JUNBSKILZNF687IKZF1ETV6MTA2EEDZNF217EP300CREMELF1IRF4BCL11AIKZF2SPI1RUNX3BATFCTCFSMARCA4MTA2RUNX3TBPYY1ELF1HMBOX1SOX6IKZF1IKZF2TRIM22MTA2JUNBTAF1RUNX3IKZF2BATFEP300IKZF1STAT3CTCFGABPB1RELBSMC3PKNOX1TBX21ELF1ETV6RUNX3RB1ETS1SPI1
COL19A1GH06J069864-6:69865033:T:C2.5318Promoter/Enhancer656EliteeQTLs,Distancechr6:69864476-69869299ENSR6_932PPM, ENSR6_932PPX, ENSR6_BHTD4, ENSR6_BHTD6, ENSR6_5LFP2R, ENSR6_5LFP4P, ENSR6_5LFP72, COL19A1_2, COL19A1_1
CHD1MXI1TBX21ATF3FOSJUNDCBX2CHD1SMARCA5CBX8EP300RELBARID3AMTA3RNF2TBPASH2LEZH2PKNOX1TRIM28TAF1POLR2AYY1NBNMLLT1TBX21CTCFE2F8SRFPOU2F2TRIM22ZNF143STAT1MTA2CBX5ATF7CREMRESTRUNX3ZNF263TBX21ZBTB40ATF2CHD1IKZF1L3MBTL2SUZ12RAD51WRNIP1USF2USF1ZNF384CTCFIKZF2KDM4AZFXHNRNPLLNRF1POLR2ARBM39MAXRBBP5CTBP1EP300KLF5XRCC5SKIMTA3ARNTZNF217GATAD2BBHLHE40DPF2TAF15MYCARID3ATRIM22CBX5LEF1TAF1SMC3IRF3RB1SMARCA5ZSCAN29TBPYY1UBTFBACH1MEF2ATAF7ELF1FOSL1SIN3ARAD21GABPASTAT1ZNF687CHD1MEF2BRCOR1RUNX3MEF2CMXI1NBNZNF143PAX5E2F6POU2F2NFICZBED1RELBIKZF1CTCFRAD21TRIM22MEF2BEBF1ZNF143MLLT1
COL19A1GH06J069874-6:69875148:C:T1.7726Enhancer71-eQTLs,Distancechr6:69874826-69877145-
ATF7E2F1ATF2CREB1ATF3JUND
COL19A1GH06J069879-6:69881439:C:T1.3353Enhancer303EliteeRNA_co-expression,Distancechr6:69879472-69883457ENSR6_843GRN, ENSR6_932PWG
ZBTB40NFICRUNX3JUNBEP300ARID3AFOSPAX5MEF2AZNF687TBPELF1PAX5SPI1ATF7GABPAMLLT1NBNASH2LCBX5ZNF143GATAD2BDPF2EBF1IKZF1POLR2ATRIM22ZNF687MTA3NFATC1ATF7IKZF2STAT5ATAF1ARNTNFATC3CHD1TBPMAXETV6MXI1MEF2BJUNBCUX1RELBARID3ABHLHE40ETS1BMI1TBL1XR1PAX5IRF4BCL3EP300BATFSTAT3RCOR1TCF12NFICMTA2RUNX3MEF2CTBX21SMC3MEF2AEEDATF2CREMSKILSPI1ZBTB40BCL11APAX8ZNF687BHLHE40
COL19A1GH06J069889-None0.0000Enhancer167EliteDistancechr6:69887128-69887278ENSR6_843GWZ
SKILMEF2BATF7SMAD1NFIBMTA2EP300NFICEBF1RELBFOSZNF687
COL19A1GH06J069887-6:69887763:G:A1.5360Enhancer153EliteeQTLs,Distancechr6:69887387-69888468-
SKILMEF2BATF7NFIBMTA2EP300RELBZNF687CBX3
COL19A1GH06J069888-None0.0000Enhancer63EliteDistancechr6:69888988-69889096--
COL19A1GH06J069892-6:69895673:G:A0.3004Enhancer237EliteC-HiC,Distancechr6:69892794-69895791ENSR6_932Q37
CTCFNFATC3ZNF687ARNTMEF2BIKZF1NFICEBF1SMARCE1IKZF2DPF2BHLHE40BCL11AFOSTRIM22GATA3NFIBNBNSKILMTA2ETS1MEF2ASMARCA5POLR2ARAD51SMARCA4TAF1PAX5RELBGATAD2BZNF687EEDEBF1IRF4BACH1RUNX3BATFZBTB33
COL19A1GH06J069913-6:69914334:T:C0.3133Enhancer183EliteDistancechr6:69913621-69914797ENSR6_BHTLW
IKZF1TRIM22RELBTBX21SPI1TCF12IKZF2MTA2CTCFTRIM28RAD21PKNOX1EP300
COL19A1GH06J069917-None0.0000Enhancer245EliteDistancechr6:69917606-69918683ENSR6_932Q9W
IKZF2IKZF1EBF1CTCFSPI1MEF2BJUNDFOSCREB1STAT3EP300ATF3
COL19A1GH06J069932-6:69933126:A:G1.7527Enhancer36-eQTLs,Distancechr6:69932180-69935833ENSR6_843HWQ, ENSR6_5LG5CF
CTCFSTAT3EP300
COL19A1GH06J069936-6:69938137:T:A1.5284Enhancer99-Distancechr6:69936276-69940320-
ATF7ATF3CEBPBSTAT3FOSGATA3EP300ATF4
COL19A1GH06J069942-6:69942906:G:A0.1975Enhancer1-Distancechr6:69942770-69944682--
COL19A1GH06J069949-None0.0000Enhancer71-Distancechr6:69949881-69950859ENSR6_843J9N
PKNOX1MNTSMARCA4
COL19A1GH06J069960-6:69961210:T:C0.8382Enhancer36-Distancechr6:69960781-69962038ENSR6_932QQG
SIN3A
COL19A1GH06J070010-None0.0000Enhancer140-Distancechr6:70010400-70010800ENSR6_932R9Q
EP400TAF9BCTCFNFRKBRNF2FOXM1HNRNPLLHDAC3GMEB1L3MBTL2ATF7NRF1MGAZSCAN29PKNOX1EHMT2CC2D1AZNF24YY1ZEB2GABPB1CTBP1
COL19A1GH06J070109-6:70110991:G:C0.5005Enhancer36-eQTLs,Distancechr6:70109837-70111080-
PKNOX1RUNX3
COL19A1GH06J070124-6:70125107:A:G0.5118Enhancer1-eQTLs,Distancechr6:70124320-70126103ENSR6_BHWQF
ZNF316FOS
COL19A1GH06J070130-6:70131979:T:A0.5737Enhancer151-eQTLs,Distancechr6:70130661-70132833ENSR6_932SKQ
TBX21TCF12MTA2SPI1IKZF1RELBNFICNBNZNF217SKILNFATC3ARID3AATF2ETV6EP300IKZF2RAD51BHLHE40ZNF384GABPAMEF2ARUNX3MTA2PBX3ZNF592CUX1TBX21JUNBJUNDBCL11ABATFATF7TCF12IRF4
COL19A1GH06J070163-6:70164691:GA:G0.4005Enhancer166-Distancechr6:70163988-70164792ENSR6_843NTK
JUNDNR2F1RFX1EGR1RNF2ZNF592SMARCC2MYNNHDAC1IKZF1DPF2ESRRASMARCA4FOXK2NCOR1ATF2CBFA2T3TCF12ATF3HES1TAL1JUNPKNOX1CEBPBTEAD4ARID1BEP300ATF7MAFFARID3AMEIS2MAFKJUNDNFE2TBL1XR1LEF1SOX6SMARCE1TCF7
COL19A1GH06J070166-6:70166497:G:A0.5815Enhancer149-Distancechr6:70166200-70166656ENSR6_BHWZD
CTCFL3MBTL2SKILMNTTRIM28CTBP1RAD21ATF7NCOA1FOXK2SMC3TRIM22CC2D1AMAXMYCMEIS2XRCC5EZH2ARID3AARID2ZNF143JUNDREST