GWAS Annotated Elements: COL19A1

Gene: collagen type XIX alpha 1 chain

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH06J069756 - 6:69761455:T:C 1.1730 Enhancer - C-HiC chr6:69756628-69764421
CBX5ZNF407TRIM28MITFRBM25PKNOX1ATF3RNF2CEBPBARID1BSMARCE1ARID3APMLCBFA2T3NR2F1HDAC2TAF9BARNTNR2F6EGR1LEF1NCOR1ESRRAKDM1ASMARCA4NCOA1CC2D1AIRF1MEIS2TRIM28FOXA1TCF12NR2C1GMEB1GATA1JUNCBFA2T2HMBOX1CUX1BCORSOX6TRIM24TBL1XR1CHAMP1MYCMYNNDPF2MBD2NR2F2TAL1NCOA2NFICGATAD2BIKZF1CREMJUNDPHB2RCOR1HDAC1NFE2TEAD4RESTHDAC3MNTYY1STAT5AEP300MTA2KLF16DACH1FOXM1EHMT2ZNF316HMBOX1GATA1DPF2SMARCA4C11orf30ARID1BMAFFHNF4AMEIS2THRANRF1ZBTB33
GH06J069812 - 6:69813190:G:C 2.2916 Enhancer Elite eQTLs,C-HiC chr6:69812015-69817180
GATA3DPF2CUX1SMARCE1ZNF217CTBP1MTA3DPF2RELBNFICATF2JUNBSKILZNF687IKZF1ETV6MTA2EEDZNF217EP300CREMELF1IRF4BCL11AIKZF2SPI1RUNX3BATFCTCFSMARCA4MTA2RUNX3TBPYY1ELF1HMBOX1SOX6IKZF1IKZF2TRIM22MTA2JUNBTAF1RUNX3IKZF2BATFEP300IKZF1STAT3CTCFGABPB1RELBSMC3PKNOX1TBX21ELF1ETV6RUNX3RB1ETS1SPI1
GH06J069864 - 6:69865033:T:C 2.5318 Promoter/Enhancer Elite eQTLs,Distance chr6:69864476-69869299
CHD1MXI1TBX21ATF3FOSJUNDCBX2CHD1SMARCA5CBX8EP300RELBARID3AMTA3RNF2TBPASH2LEZH2PKNOX1TRIM28TAF1POLR2AYY1NBNMLLT1TBX21CTCFE2F8SRFPOU2F2TRIM22ZNF143STAT1MTA2CBX5ATF7CREMRESTRUNX3ZNF263TBX21ZBTB40ATF2CHD1IKZF1L3MBTL2SUZ12RAD51WRNIP1USF2USF1ZNF384CTCFIKZF2KDM4AZFXHNRNPLLNRF1POLR2ARBM39MAXRBBP5CTBP1EP300KLF5XRCC5SKIMTA3ARNTZNF217GATAD2BBHLHE40DPF2TAF15MYCARID3ATRIM22CBX5LEF1TAF1SMC3IRF3RB1SMARCA5ZSCAN29TBPYY1UBTFBACH1MEF2ATAF7ELF1FOSL1SIN3ARAD21GABPASTAT1ZNF687CHD1MEF2BRCOR1RUNX3MEF2CMXI1NBNZNF143PAX5E2F6POU2F2NFICZBED1RELBIKZF1CTCFRAD21TRIM22MEF2BEBF1ZNF143MLLT1
GH06J069874 - 6:69875148:C:T 1.7726 Enhancer - eQTLs,Distance chr6:69874826-69877145
ATF7E2F1ATF2CREB1ATF3JUND
GH06J069879 - 6:69881439:C:T 1.3353 Enhancer Elite eRNA_co-expression,Distance chr6:69879472-69883457
ZBTB40NFICRUNX3JUNBEP300ARID3AFOSPAX5MEF2AZNF687TBPELF1PAX5SPI1ATF7GABPAMLLT1NBNASH2LCBX5ZNF143GATAD2BDPF2EBF1IKZF1POLR2ATRIM22ZNF687MTA3NFATC1ATF7IKZF2STAT5ATAF1ARNTNFATC3CHD1TBPMAXETV6MXI1MEF2BJUNBCUX1RELBARID3ABHLHE40ETS1BMI1TBL1XR1PAX5IRF4BCL3EP300BATFSTAT3RCOR1TCF12NFICMTA2RUNX3MEF2CTBX21SMC3MEF2AEEDATF2CREMSKILSPI1ZBTB40BCL11APAX8ZNF687BHLHE40
GH06J069889 - None 0.0000 Enhancer Elite Distance chr6:69887128-69887278
SKILMEF2BATF7SMAD1NFIBMTA2EP300NFICEBF1RELBFOSZNF687
GH06J069887 - 6:69887763:G:A 1.5360 Enhancer Elite eQTLs,Distance chr6:69887387-69888468
SKILMEF2BATF7NFIBMTA2EP300RELBZNF687CBX3
GH06J069888 - None 0.0000 Enhancer Elite Distance chr6:69888988-69889096 -
GH06J069892 - 6:69895673:G:A 0.3004 Enhancer Elite C-HiC,Distance chr6:69892794-69895791
CTCFNFATC3ZNF687ARNTMEF2BIKZF1NFICEBF1SMARCE1IKZF2DPF2BHLHE40BCL11AFOSTRIM22GATA3NFIBNBNSKILMTA2ETS1MEF2ASMARCA5POLR2ARAD51SMARCA4TAF1PAX5RELBGATAD2BZNF687EEDEBF1IRF4BACH1RUNX3BATFZBTB33
GH06J069913 - 6:69914334:T:C 0.3133 Enhancer Elite Distance chr6:69913621-69914797
IKZF1TRIM22RELBTBX21SPI1TCF12IKZF2MTA2CTCFTRIM28RAD21PKNOX1EP300
GH06J069917 - None 0.0000 Enhancer Elite Distance chr6:69917606-69918683
IKZF2IKZF1EBF1CTCFSPI1MEF2BJUNDFOSCREB1STAT3EP300ATF3
GH06J069932 - 6:69933126:A:G 1.7527 Enhancer - eQTLs,Distance chr6:69932180-69935833
CTCFSTAT3EP300
GH06J069936 - 6:69938137:T:A 1.5284 Enhancer - Distance chr6:69936276-69940320
ATF7ATF3CEBPBSTAT3FOSGATA3EP300ATF4
GH06J069942 - 6:69942906:G:A 0.1975 Enhancer - Distance chr6:69942770-69944682 -
GH06J069949 - None 0.0000 Enhancer - Distance chr6:69949881-69950859
PKNOX1MNTSMARCA4
GH06J069960 - 6:69961210:T:C 0.8382 Enhancer - Distance chr6:69960781-69962038
SIN3A
GH06J070010 - None 0.0000 Enhancer - Distance chr6:70010400-70010800
EP400TAF9BCTCFNFRKBRNF2FOXM1HNRNPLLHDAC3GMEB1L3MBTL2ATF7NRF1MGAZSCAN29PKNOX1EHMT2CC2D1AZNF24YY1ZEB2GABPB1CTBP1
GH06J070109 - 6:70110991:G:C 0.5005 Enhancer - eQTLs,Distance chr6:70109837-70111080
PKNOX1RUNX3
GH06J070124 - 6:70125107:A:G 0.5118 Enhancer - eQTLs,Distance chr6:70124320-70126103
ZNF316FOS
GH06J070130 - 6:70131979:T:A 0.5737 Enhancer - eQTLs,Distance chr6:70130661-70132833
TBX21TCF12MTA2SPI1IKZF1RELBNFICNBNZNF217SKILNFATC3ARID3AATF2ETV6EP300IKZF2RAD51BHLHE40ZNF384GABPAMEF2ARUNX3MTA2PBX3ZNF592CUX1TBX21JUNBJUNDBCL11ABATFATF7TCF12IRF4
GH06J070163 - 6:70164691:GA:G 0.4005 Enhancer - Distance chr6:70163988-70164792
JUNDNR2F1RFX1EGR1RNF2ZNF592SMARCC2MYNNHDAC1IKZF1DPF2ESRRASMARCA4FOXK2NCOR1ATF2CBFA2T3TCF12ATF3HES1TAL1JUNPKNOX1CEBPBTEAD4ARID1BEP300ATF7MAFFARID3AMEIS2MAFKJUNDNFE2TBL1XR1LEF1SOX6SMARCE1TCF7
GH06J070166 - 6:70166497:G:A 0.5815 Enhancer - Distance chr6:70166200-70166656
CTCFL3MBTL2SKILMNTTRIM28CTBP1RAD21ATF7NCOA1FOXK2SMC3TRIM22CC2D1AMAXMYCMEIS2XRCC5EZH2ARID3AARID2ZNF143JUNDREST