GWAS Annotated: COL4A4

Gene: collagen type IV alpha 4 chain

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
COL4A4GH02J226968-2:226972104:G:C1.2751Enhancer206EliteDistancechr2:226968853-226972658ENSR2_CSJ4J
JUNDCTCFPKNOX1RUNX3RAD51NBNMNTTCF12BHLHE40
COL4A4GH02J226972-2:226973822:G:A0.3641Enhancer1-Distancechr2:226972957-226974242--
COL4A4GH02J226974-2:226974823:C:T1.0170Enhancer36-Distancechr2:226974410-226975198--
COL4A4GH02J226976-2:226977076:A:C0.1040Enhancer98EliteDistancechr2:226976984-226977134-
ZFX
COL4A4GH02J226977-2:226979286:A:G0.2706Enhancer232EliteDistancechr2:226977241-226979424ENSR2_B3N388
TBX21MEF2BMTA2NFICCBFBRNF2NFATC3ATF7BHLHE40EP300ATF3JUNBSMARCE1RUNX3FOSZNF384TCF7GATA1TEAD4DPF2JUNDBATFSMARCA4SOX6GATAD2BGATA2MEIS2GATA3NFE2ARID1BKDM1ABCORRBM25MTA3CTCFZBTB7AATF7NRF1ZNF592RESTHMBOX1SMARCA4ARID1BMEIS2GATA1ZNF24RAD21C11orf30MAFKEP300CBFA2T3ZNF143IKZF1NFE2MAFFNFICZNF316DPF2
COL4A4GH02J226981-None0.0000Enhancer199EliteDistancechr2:226981904-226982054ENSR2_B3N38S
DPF2CREB3L1PMLSMARCE1MYCHDAC1STAT5ANCOR1CBFA2T3ZFXNR2F2EP300GATAD2AARID1BGATA1MTA2TCF12TAL1TEAD4CBFA2T2HDAC2JUND
COL4A4GH02J226982-2:226982216:A:G0.0648Enhancer167EliteDistancechr2:226982124-226982274ENSR2_B3N38S
DPF2CREB3L1PMLSMARCE1MYCHDAC1NCOR1ZFXNR2F2GATAD2AGATA1MTA2TCF12JUND
COL4A4GH02J226984-2:226985493:G:C0.2077Enhancer389EliteDistancechr2:226984040-226985854ENSR2_CSJ5L, ENSR2_53ZDHNW
TCF12ZBTB33DPF2ZNF687NFICGABPB1EEDZBED1NFATC1ETV6TAF1RUNX3YY1BCL3BCL11AEP300JUNDJUNBCREMEBF1PAX5ETS1RAD21BATFIRF4ELF1SRFTCF7SPI1HNRNPKMEF2BGATA3SMC3GATA2CTCFRAD21IKZF2SP1EP300RB1MAXRXRAMAFKFOXA1TRIM22C11orf30FOXA2ZNF316MAFFARID2ZNF384ETS1HNF4AZNF143REST
COL4A4GH02J226994-2:226995955:G:A1.6353Enhancer121-Distancechr2:226994768-226996468ENSR2_53ZDKBP, ENSR2_B3N3BR
CTCFCUX1FOXA1FOXA2GATA3RAD21RFX5FOSJUNBBCL3C11orf30FOSBATFZNF316POLR2ASTAT3MAFKMAFFJUNDREST
COL4A4GH02J227033-None0.0000Enhancer117-Distancechr2:227033464-227033614ENSR2_53ZDRXB
CTCFRBM39RAD21RUNX3ZNF143SMC3EP300PRDM10XRCC5RCOR1RFX5
COL4A4GH02J227083-2:227083809:C:T0.5954Enhancer1-Distancechr2:227083446-227085570-
ZNF316
COL4A4GH02J227107-2:227107260:A:G0.2143Enhancer133-Distancechr2:227107224-227107354ENSR2_B3N3WZ, ENSR2_53ZF9KL
CTCFSMC3RAD21TRIM22XRCC5RESTARID3ACEBPBRUNX3ATF3YY1ZNF384ZNF143
COL4A4GH02J227153-None0.0000Enhancer87-eRNA_co-expression,Distancechr2:227153337-227153549ENSR2_88NBNJ
CTCF
COL4A4GH02J227155-2:227155051:G:A0.3667Enhancer1-Distancechr2:227155044-227155214ENSR2_B3N46W
NR3C1
COL4A4GH02J227156-None0.0000Enhancer1-Distancechr2:227155218-227155361ENSR2_B3N46W
NR3C1CTCF
COL4A4GH02J227163-2:227163765:G:A0.7075Promoter/Enhancer507EliteDistancechr2:227163516-227165627ENSR2_B3N485, ENSR2_53ZFMBS, ENSR2_95C6GF, ENSR2_53ZFMH8, COL4A3_2, COL4A3_1
EZH2SUZ12POLR2ASIN3ARNF2CTCFPHF8RBBP5KDM4AHNRNPKZEB1MYCL3MBTL2TAF15KDM4AASH2LZNF263MXI1SIN3ACTCFRNF2GABPAETS1CTBP1ARID3ACREB1RUNX3TBPBATF
COL4A4GH02J227189-None0.0000Enhancer71-C-HiCchr2:227188384-227188534ENSR2_95C6PF
ASH2LNFICFOSL2POLR2ANR2F2GABPARUNX3MEF2ATAF1ETS1EP300
COL4A4GH02J227188-2:227188871:T:C0.7595Enhancer1-C-HiCchr2:227188709-227189259-
ASH2LPOLR2ANR2F2