GWAS Annotated: COLEC12

Gene: collectin subfamily member 12

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
COLEC12GH18J000305-None0.0000Enhancer56-C-HiCchr18:305060-305210ENSR18_959B
CTCFFOSEP300
COLEC12GH18J000314-18:314592:C:T0.9296Enhancer56-C-HiCchr18:314190-315305ENSR18_95D6-
COLEC12GH18J000316-18:316120:C:T2.0482Enhancer1-C-HiCchr18:316105-316155--
COLEC12GH18J000322-18:322226:T:A1.3207Enhancer375EliteDistancechr18:322126-323291ENSR18_B3PN
RNF2CTCFL3MBTL2MNTEP400MTA3NRF1ELF4C11orf30NBNGMEB1ELF1ATF3ZEB2SMARCA4CBX3ZNF316MYCDPF2MTA1UBTFMYNNMBD2ARID3AZNF24CREB3L1NFATC3NFICTCF12SUZ12RFX1JUNBRNF2HDAC1SMARCC2FOXA2RAD21TFAP4IKZF1HDAC3BACH1HCFC1ZNF143ZNF318E4F1ARNTRCOR1TAL1GABPAJUNDRUNX3ZSCAN29MLLT1NR2F1KLF16CBFA2T3BMI1TRIM28SKIFOSSTAT3KDM1AMEIS2NEUROD1NCOA1HMBOX1TRIM24RLFPRDM10SMC3STAT5AARID1BJUNATF7TBL1XR1EP300ATF2MAXESRRARUNX1CTBP1HDAC2STAT1LEF1SMARCE1FOXK2RB1FOXM1NCOR1MAFKFOXA1FOSL1BHLHE40MAFFFOSL2SOX6THRASKILNR2F2BATFNR2F6ASH2LRESTCREMNFE2CBFA2T2TEAD4HES1RAD51RXRAZNF384BCORZFP91HDAC1ZNF282TFAP4HNF4AJUNDSP1RXRAZNF24FOSETS1ATF3
COLEC12GH18J000323-None0.0000Enhancer284EliteDistancechr18:323380-323617ENSR18_95GL
NCOR1ASH2LHDAC1ZNF282TFAP4HNF4AJUNDSP1RXRAZNF24FOSETS1ATF3LCORLRCOR1ARID3AKDM1ASMC3HDAC2TBL1XR1CEBPBJUNFOXA1EP300HNF4GFOSL2FOXA2CREB1
COLEC12GH18J000331-18:331733:G:A0.7205Enhancer216EliteeQTLs,C-HiC,Distancechr18:331055-333853ENSR18_CW2
SPI1EP300IKZF1CBFA2T3GATA2CBFA2T2CTCFRAD21EP300
COLEC12GH18J000335-None0.0000Enhancer44-Distancechr18:335833-336074-
ATF3FOS
COLEC12GH18J000336-None0.0000Enhancer52-Distancechr18:336672-336972-
SPI1
COLEC12GH18J000346-18:346821:C:T0.1708Enhancer1-C-HiC,Distancechr18:346740-346890-
MAFKCREB1
COLEC12GH18J000352-18:352095:A:T0.6915Enhancer91-C-HiC,Distancechr18:352077-356061ENSR18_B3W9
MAFFMAFKZNF316C11orf30FOSEP300ATF4
COLEC12GH18J000360-18:362151:G:T0.8333Enhancer346EliteC-HiC,Distancechr18:360683-365492ENSR18_89PT, ENSR18_95WG
C11orf30ZNF316MAFKMAFFFOXA1NR2F6SP1HDAC2EP300ATF2RXRAHNF4GJUNDCEBPBTBPKDM5ASKIRNF2KDM1ACREB1CHD4FOSL2BHLHE40CREMRESTRAD21MAXMNTETS1USF1GATA2ASH2LMAFFARID3ASPI1SMARCA4POLR2GTFAP4SIN3ARCOR1KAT2BNCOR1TCF7EHMT2RXRAEP300CEBPBFOXA2YY1SP1HNF4GFOXA1HNF4ATAF1ETV4HNF1APOLR2AELF1STAT3FOSCEBPB
COLEC12GH18J000367-None0.0000Enhancer63EliteC-HiC,Distancechr18:366050-366159--
COLEC12GH18J000366-18:366420:TACTA:T0.0974Enhancer63EliteC-HiC,Distancechr18:366404-366990ENSR18_89T6
CEBPB
COLEC12GH18J000370-18:371281:C:T0.6222Enhancer118EliteC-HiC,Distancechr18:370572-372277ENSR18_B3ZQ
CTCFSPI1MXI1RCOR1RAD21
COLEC12GH18J000374-18:379749:G:A0.8446Enhancer303EliteC-HiC,Distancechr18:374390-380600ENSR18_B428, ENSR18_962X, ENSR18_9636, ENSR18_B42Z
POLR2ARUNX3POU2F2PAX5EP300EP300NANOGUSF1USF2EP300GABPARESTSPI1ZNF274
COLEC12GH18J000392-18:394141:T:C0.8704Enhancer423EliteC-HiC,Distancechr18:392525-397290ENSR18_C33L
NFICMAFKNRF1MXI1GATA2GATA3RCOR1TRIM24ATF4ATF3EP300RFX1SIN3ARCOR1BHLHE40MAFKUSF2USF1MXI1BHLHE40TRIM28L3MBTL2MGAMNTFOSGATA3MYCPKNOX1EP300MAXSIN3AGATA2CTBP1YY1JUNDARNTNFE2USF1RCOR1NFE2L2BHLHE40RESTRAD21
COLEC12GH18J000398-18:401128:G:C1.2182Enhancer235EliteC-HiC,Distancechr18:398274-401183ENSR18_969J, ENSR18_969N, ENSR18_B45Z
ZNF217MYCFOXA1PKNOX1SMARCA4RFX1CTCFGABPANRF1EP300FOSBHLHE40NFE2L2MYCUSF2CEBPB
COLEC12GH18J000405-None0.0000Enhancer91-C-HiC,Distancechr18:405240-405390-
ZNF444ZNF280ANR2F1NR2C1
COLEC12GH18J000406-18:408688:C:T1.0595Enhancer99-C-HiC,Distancechr18:406675-408765-
NFIBNFICFOSJUND
COLEC12GH18J000410-None0.0000Enhancer44-Distancechr18:410445-410458--
COLEC12GH18J000412-18:413237:A:C1.3979Enhancer143-Distancechr18:412870-413817-
DPF2SMARCA4ARNTZNF639C11orf30ZNF316FOSBACH1MAFKSOX6PKNOX1NFE2L2MEIS2MAFFNFE2JUNDRBM25
COLEC12GH18J000415-18:416464:T:G1.9958Enhancer240EliteC-HiC,Distancechr18:415197-417164ENSR18_B487
HMBOX1RAD21SPI1FOSJUNDCEBPBGATA2IKZF1JUNDMAFKYY1CEBPBATF3
COLEC12GH18J000417-18:417559:T:C1.4510Enhancer118EliteC-HiC,Distancechr18:417372-418086ENSR18_96GT
RESTEP300
COLEC12GH18J000420-18:421579:A:G0.5657Enhancer245EliteC-HiC,Distancechr18:420756-422311ENSR18_7N35, ENSR18_B492
FOSJUNDBHLHE40RAD21GATA3JUNDFOSFOSL2
COLEC12GH18J000423-18:423748:GT:G2.1120Enhancer160EliteC-HiC,Distancechr18:423510-425441ENSR18_96JQ, ENSR18_96JT
RBM25POLR2ANR2F1IKZF1
COLEC12GH18J000427-None0.0000Enhancer173EliteDistancechr18:427080-427270ENSR18_96KL
RFX1FOSMAFKBCL3C11orf30ZNF316JUNDMAFFNFE2
COLEC12GH18J000433-18:433431:G:A1.7192Enhancer282EliteDistancechr18:433012-435721ENSR18_8CB8, ENSR18_96MQ
RESTJUNBFOSJUNDATF2ATF7SOX6HDAC1ATF3PKNOX1ZEB2L3MBTL2ATF4TRIM24MEIS2EP300IKZF1CEBPBCTBP1CTCFRAD21
COLEC12GH18J000446-18:447835:A:C1.4692Enhancer1-Distancechr18:446543-448042ENSR18_96RF
EP300SPI1
COLEC12GH18J000448-18:450102:G:A1.6828Enhancer192EliteC-HiC,Distancechr18:448860-450250ENSR18_B4F3
CTCFPOLR2AGATA3FOXA1EP300MNTMYC
COLEC12GH18J000452-18:452951:A:C1.2433Enhancer63EliteDistancechr18:452757-453400ENSR18_8CP5
SPI1
COLEC12GH18J000455-18:457853:T:G1.7444Enhancer297EliteDistancechr18:455777-460653ENSR18_C384, ENSR18_96X4
POLR2AEP300CTCFTRIM28GATA2POLR2ARCOR1EP300SMARCA4BHLHE40CEBPBCTCFCTCFEP300
COLEC12GH18J000463-18:464399:T:C0.6531Enhancer144EliteC-HiC,Distancechr18:463600-464761ENSR18_B4H6
POLR2ACTCFEP300SPI1FOSZNF263SPI1
COLEC12GH18J000468-18:469797:C:A0.4944Enhancer82-C-HiC,Distancechr18:468724-469856ENSR18_972Q, ENSR18_54ZGM, ENSR18_54ZJF
NRF1CTCFSRFRAD21EP300SPI1
COLEC12GH18J000470-18:470983:T:TAA1.3322Enhancer229EliteC-HiC,Distancechr18:470799-471401ENSR18_B4J6
MAFKMAFFZNF316EP300FOSJUNDGABPACEBPBSPI1
COLEC12GH18J000474-18:475155:A:C0.8644Enhancer282EliteC-HiC,Distancechr18:474372-476749ENSR18_552DG, ENSR18_B4JR
CTCFZNF263POLR2AKDM1ATAF1SP1ETV4FOSGATA2JUNDSTAT3EP300RESTRXRARAD21FOXA1SIN3AFOSL2RCOR1CTCFFOXA1
COLEC12GH18J000478-18:478521:G:A0.7748Enhancer267EliteDistancechr18:478041-480352ENSR18_975K, ENSR18_B4KD
CTCFRFX1SMARCA4EGR1JUNFOSJUNDFOSL1ESRRAATF3POLR2ANCOR1TFAP4BHLHE40ETV4NR2F6LCORLESRRA
COLEC12GH18J000489-18:490268:A:G0.6525Enhancer257EliteDistancechr18:489243-490571ENSR18_978M
ATF3JUNDFOSBHLHE40ZEB2NFE2NFE2L2C11orf30CEBPBUSF1
COLEC12GH18J000490-None0.0000Enhancer36-Distancechr18:490700-490850-
REST
COLEC12GH18J000494-18:494532:C:A1.5797Enhancer259EliteDistancechr18:494171-495575ENSR18_8DKZ, ENSR18_8DLC, ENSR18_8DLK
ZNF263FOSCEBPBUSF1USF2BHLHE40NFATC3BATFBCL11ARUNX3MAFKMEIS2
COLEC12GH18J000496-18:497568:A:C0.1460Enhancer264EliteDistancechr18:496801-497770ENSR18_B4MW, ENSR18_5568P
CTCFTRIM28ATF7ATF2KDM1AATF3CTBP1DPF2JUNDRAD21TRIM22GMEB1FOXK2RESTPKNOX1MEIS2SMARCA4YY1SOX6MITFSMC3KLF16JUNZNF143CREMSPI1CREB1ARID1BNFE2ZEB2BCORTAL1ZNF639SMARCA5HMBOX1
COLEC12GH18J000498-18:500297:A:G0.6366Promoter/Enhancer606EliteDistancechr18:498656-501001ENSR18_C3C6, ENSR18_556P7, ENSR18_8DPR, ENSR18_B4NJ, COLEC12_1
EZH2RNF2SUZ12EGR1L3MBTL2SMARCE1TCF7L2IKZF1MYCGATA3CEBPBMTA1LEF1NR2F1CTBP1KDM1ATEAD4HES1FOXA2USF2TCF7RCOR1GATAD2BFOXA1CBFA2T3HDAC1SOX6BMI1CBFA2T2RUNX1MEIS2CTCFGATA2MAFKBHLHE40RAD21JUNDESRRAPKNOX1ASH2LSMC3RBM39KDM4ABACH1HDAC2HDAC1HDAC6TAF1RAD21POLR2ARBBP5ZNF263RNF2KDM4AL3MBTL2EZH2
COLEC12GH18J000504-None0.0000Enhancer126-Distancechr18:504020-504170-
CEBPBRCOR1ZNF217NFIBFOXA1GATA3FOSJUNDMTA1CTBP1SMARCE1DPF2
COLEC12GH18J000505-18:505780:C:A0.5258Enhancer154-Distancechr18:505660-505810-
NFATC3MEF2BATF2ZNF217SKILTRIM22BMI1IKZF1JUNBBACH1MTA2ARID3AEP300IKZF2RAD51ATF7BCL11AJUNDTBX21DPF2BHLHE40BATFRELBEBF1MLLT1
COLEC12GH18J000515-18:516803:G:C1.0980Enhancer117-Distancechr18:515275-517083-
CTCFZBTB33RAD21C11orf30FOSZNF316MAFKMAFF
COLEC12GH18J000518-18:519982:T:G0.4244Enhancer271EliteDistancechr18:518049-520035ENSR18_B4R5
ZBTB33MGAL3MBTL2IKZF1ZNF316CEBPBMYCSMARCE1RELBEP400ZNF639NFATC3ATF3ARID1BCBX3TRIM28POLR2ASMARCC2ARNTDPF2NBNC11orf30HDAC3SOX6MAFKL3MBTL2PHF8FOXK2ATF7NCOR1CHAMP1ZNF316JUNDBACH1TRIM24MTA3MAFFMNTSKILNFE2L2ESRRAPKNOX1BHLHE40MGASMARCA4CTBP1MLLT1EP300NFE2ZNF24NFRKBHDAC1GABPB1MEIS2EHMT2E4F1LEF1ELF1RNF2HDAC2BATFZNF592MAXPHF20ZNF687JUNMEF2BNUFIP1CREMUSF2RAD51USF1EBF1E2F6NFICZBTB33
COLEC12GH18J000524-18:525667:T:C0.2350Enhancer195EliteC-HiCchr18:524288-525762ENSR18_97LR, ENSR18_B4RZ
RNF2POLR2AARID1BCEBPBSOX6IKZF1PKNOX1MEIS2FOSJUNDATF3GATA2RFX1CTCFRAD21RBM25ZMYM3SMARCA5RLFBCOR
COLEC12GH18J000567-18:567260:T:C0.1873Enhancer36-C-HiCchr18:567200-567350ENSR18_9845
FOXA1MAFKMAFFIKZF1
COLEC12GH18J000572-18:572995:A:G0.5102Enhancer151-C-HiCchr18:572894-576126ENSR18_B546
KDM1ACREMNCOR1SP1RXRAHNF4AASH2LTCF7CHD4ZMYM3TCF7EP300SP1NR2F6HNF4GRXRAKDM1AFOXA1YY1MAFFMAFKTCF12SP1EP300TAF7USF1
COLEC12GH18J000576-18:580060:C:T0.4604Enhancer121-C-HiCchr18:576658-580131ENSR18_8GDD
NFICNRF1ESRRAYY1RFX5RFX1CEBPBRFX5NRF1ZSCAN29RESTSETDB1ESRRAATF7CREB3L1EGR1NEUROD1