GWAS Annotated: CTNNA2

Gene: catenin alpha 2

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
CTNNA2GH02J079295-2:79295463:G:T0.0703Enhancer11-eRNA_co-expression,Distancechr2:79295288-79295537--
CTNNA2GH02J079392-2:79393627:A:AG0.9686Enhancer212-Distancechr2:79392979-79394890ENSR2_BKQFD, ENSR2_5NN7L4
MAFKMAFFZNF384NRF1KDM1AHDAC2TCF7L2EHMT2TRIM28EP300CREMASH2LNR2F6MAXRESTRXRATCF7TBX3SP1CTCFSOX13ARID3ANR2F2RAD21CREB1SMARCA4FOXA2FOXP1ATF4TFAP4
CTNNA2GH02J079511-None0.0000Enhancer215-C-HiC,Distancechr2:79511434-79511564ENSR2_936K4R, ENSR2_5NNXMR
L3MBTL2RESTKDM1ACHD7EHMT2MGAMNTXRCC5MAXSAP30ETS1MIER1RCOR1BHLHE40MYCZNF143CREMRAD21SIN3AHDAC2USF1E2F6
CTNNA2GH02J079513-None0.0000Enhancer56-C-HiC,Distancechr2:79512174-79512324-
PHF8ASH2LL3MBTL2MXI1
CTNNA2GH02J079512-2:79513005:G:T0.1524Promoter/Enhancer467EliteC-HiC,Distancechr2:79512399-79513613ENSR2_BKR3K, ENSR2_84C58L, CTNNA2_1
PHF8ASH2LL3MBTL2MXI1USF2RBM39TAF7SP1RESTTCF12USF1HNRNPKMAXRFX1HDAC2SIN3AHCFC1HNRNPLLNRF1CTCFPOLR2ARCOR1ZNF639XRCC5RBBP5MAXEGR1HDAC2E2F6RESTJUNDSMC3RAD21TAF1ZNF143SMARCA4PCBP1KDM4AHNRNPKASH2LSAP30RAD21
CTNNA2GH02J079579-2:79579884:G:C0.5758Promoter94-Distancechr2:79579875-79579935CTNNA2_2-
CTNNA2GH02J079585-None0.0000Enhancer1-Distancechr2:79585808-79585993ENSR2_BKRG7-
CTNNA2GH02J079640-None0.0000Enhancer56-Distancechr2:79640174-79640264-
NANOG
CTNNA2GH02J079670-None0.0000Enhancer82-C-HiC,Distancechr2:79670334-79670484ENSR2_936LRQ
XRCC5CTCFZNF143JUNDSMARCA4RAD21
CTNNA2GH02J079716-2:79716513:G:A0.7442Enhancer36-Distancechr2:79716479-79718241ENSR2_BKS67
SMARCA4CTCFBHLHE40USF2FOXA2
CTNNA2GH02J079722-2:79723031:G:A0.3342Enhancer82-C-HiC,Distancechr2:79722120-79724994ENSR2_936MD9
FOSCEBPBTCF12JUNDSMC3MAFKNFE2L2RCOR1FOSL2FOSSP1CEBPBFOXA1
CTNNA2GH02J079782-2:79782517:G:A0.1805Enhancer170EliteDistancechr2:79782253-79783773ENSR2_936N29
POLR2AASH2LHDAC2ETS1SP1EP300TCF12NANOGRAD21BCL11ACTCFUSF1USF2
CTNNA2GH02J079789-2:79790405:G:T0.4757Enhancer36-Distancechr2:79789180-79790442-
TRIM28
CTNNA2GH02J079820-2:79820293:G:A0.9121Enhancer1-Distancechr2:79820230-79820820--
CTNNA2GH02J079831-2:79833207:T:G0.2542Enhancer56-C-HiC,Distancechr2:79831988-79833739ENSR2_84CD4H
EP300NANOGHDAC2TCF12CHD7SRF
CTNNA2GH02J080000-2:80001364:T:C0.8645Enhancer1-Distancechr2:80000950-80002664ENSR2_936QCN
JUNDCEBPBSMC3
CTNNA2GH02J080007-2:80008673:C:T0.2211Enhancer82-Distancechr2:80007986-80008858ENSR2_936QFJ
CEBPBTRIM28ZNF263JUNDNANOGBCL11AEZH2FOXA2
CTNNA2GH02J080080-2:80080970:AAAG:A0.8291Enhancer41-Distancechr2:80080945-80081197--
CTNNA2GH02J080086-2:80086832:A:T2.7239Enhancer146-Distancechr2:80086457-80087111ENSR2_936R9B
CTCFCBFA2T2TAL1SMC3GMEB1GATA3RAD21CBFA2T3GATA2RCOR1STAT3CEBPBEP300NCOR1FOSATF3ARID1BDPF2ZNF639C11orf30SMARCA4SOX6ZNF316ZNF592BACH1MAFKMAFFNFE2L2NFE2
CTNNA2GH02J080102-2:80102305:T:C1.0384Enhancer71-Distancechr2:80102214-80102364ENSR2_936RFP
ATF3ARID1BCEBPBFOSSTAT3JUNDRCOR1MAFKBHLHE40
CTNNA2GH02J080284-2:80284624:C:T1.1577Enhancer6--chr2:80284436-80284636--
CTNNA2GH02J080301-None0.0000Enhancer6--chr2:80301212-80301605-
EZH2
CTNNA2GH02J080303-None0.0000Enhancer71--chr2:80303435-80303525ENSR2_5NTZG5
SUZ12KDM4AEZH2ASH2LRNF2MGANRF1SIN3AGATA2USF1
CTNNA2GH02J080304-None0.0000Promoter164-Physical Overlap (TSS)chr2:80304424-80304484ENSR2_BKXB5, LRRTM1_2
EZH2RAD21ASH2LTAF1KDM4ASIN3ACTCFRNF2
CTNNA2GH02J080306-None0.0000Promoter149-Physical Overlap (TSS)chr2:80304699-80304759ENSR2_BKXB5, LRRTM1_1
RAD21ASH2LKDM4ASIN3ACTCFSMC3
CTNNA2GH02J080305-None0.0000Promoter94-Physical Overlap (TSS)chr2:80305068-80305128CTNNA2_3
CTCFEZH2
CTNNA2GH02J080361-None0.0000Enhancer158--chr2:80361995-80362125-
TRIM28HMBOX1BRCA1BRD9PMLKDM1AHDAC1CTBP1MEIS2SMARCE1DPF2NCOA1SMARCA4CBFA2T3NFICTCF12MYCSOX6STAT5ATAL1HDAC2TRIM24ARID1BZEB2KLF16MTA2CBFA2T2CEBPBEP300GATA1NFE2TEAD4NCOR1
CTNNA2GH02J080421-None0.0000Enhancer6--chr2:80421154-80421490--
CTNNA2GH02J080495-2:80496395:C:CT0.0077Enhancer71--chr2:80495976-80497705ENSR2_936XMZ
BHLHE40RAD51FOSYY1MYCJUNDSTAT3CEBPBRAD21
CTNNA2GH02J080546-None0.0000Enhancer1--chr2:80546806-80546875-
EP300TCF12FOSSTAT3
CTNNA2GH02J080555-2:80556509:C:A0.8462Enhancer1--chr2:80555739-80558227--