GWAS Annotated Elements: CTNNA2

Gene: catenin alpha 2

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH02J079295 - 2:79295463:G:T 0.0703 Enhancer - eRNA_co-expression,Distance chr2:79295288-79295537 -
GH02J079392 - 2:79393627:A:AG 0.9686 Enhancer - Distance chr2:79392979-79394890
MAFKMAFFZNF384NRF1KDM1AHDAC2TCF7L2EHMT2TRIM28EP300CREMASH2LNR2F6MAXRESTRXRATCF7TBX3SP1CTCFSOX13ARID3ANR2F2RAD21CREB1SMARCA4FOXA2FOXP1ATF4TFAP4
GH02J079511 - None 0.0000 Enhancer - C-HiC,Distance chr2:79511434-79511564
L3MBTL2RESTKDM1ACHD7EHMT2MGAMNTXRCC5MAXSAP30ETS1MIER1RCOR1BHLHE40MYCZNF143CREMRAD21SIN3AHDAC2USF1E2F6
GH02J079513 - None 0.0000 Enhancer - C-HiC,Distance chr2:79512174-79512324
PHF8ASH2LL3MBTL2MXI1
GH02J079512 - 2:79513005:G:T 0.1524 Promoter/Enhancer Elite C-HiC,Distance chr2:79512399-79513613
PHF8ASH2LL3MBTL2MXI1USF2RBM39TAF7SP1RESTTCF12USF1HNRNPKMAXRFX1HDAC2SIN3AHCFC1HNRNPLLNRF1CTCFPOLR2ARCOR1ZNF639XRCC5RBBP5MAXEGR1HDAC2E2F6RESTJUNDSMC3RAD21TAF1ZNF143SMARCA4PCBP1KDM4AHNRNPKASH2LSAP30RAD21
GH02J079579 - 2:79579884:G:C 0.5758 Promoter - Distance chr2:79579875-79579935 -
GH02J079585 - None 0.0000 Enhancer - Distance chr2:79585808-79585993 -
GH02J079640 - None 0.0000 Enhancer - Distance chr2:79640174-79640264
NANOG
GH02J079670 - None 0.0000 Enhancer - C-HiC,Distance chr2:79670334-79670484
XRCC5CTCFZNF143JUNDSMARCA4RAD21
GH02J079716 - 2:79716513:G:A 0.7442 Enhancer - Distance chr2:79716479-79718241
SMARCA4CTCFBHLHE40USF2FOXA2
GH02J079722 - 2:79723031:G:A 0.3342 Enhancer - C-HiC,Distance chr2:79722120-79724994
FOSCEBPBTCF12JUNDSMC3MAFKNFE2L2RCOR1FOSL2FOSSP1CEBPBFOXA1
GH02J079782 - 2:79782517:G:A 0.1805 Enhancer Elite Distance chr2:79782253-79783773
POLR2AASH2LHDAC2ETS1SP1EP300TCF12NANOGRAD21BCL11ACTCFUSF1USF2
GH02J079789 - 2:79790405:G:T 0.4757 Enhancer - Distance chr2:79789180-79790442
TRIM28
GH02J079820 - 2:79820293:G:A 0.9121 Enhancer - Distance chr2:79820230-79820820 -
GH02J079831 - 2:79833207:T:G 0.2542 Enhancer - C-HiC,Distance chr2:79831988-79833739
EP300NANOGHDAC2TCF12CHD7SRF
GH02J080000 - 2:80001364:T:C 0.8645 Enhancer - Distance chr2:80000950-80002664
JUNDCEBPBSMC3
GH02J080007 - 2:80008673:C:T 0.2211 Enhancer - Distance chr2:80007986-80008858
CEBPBTRIM28ZNF263JUNDNANOGBCL11AEZH2FOXA2
GH02J080080 - 2:80080970:AAAG:A 0.8291 Enhancer - Distance chr2:80080945-80081197 -
GH02J080086 - 2:80086832:A:T 2.7239 Enhancer - Distance chr2:80086457-80087111
CTCFCBFA2T2TAL1SMC3GMEB1GATA3RAD21CBFA2T3GATA2RCOR1STAT3CEBPBEP300NCOR1FOSATF3ARID1BDPF2ZNF639C11orf30SMARCA4SOX6ZNF316ZNF592BACH1MAFKMAFFNFE2L2NFE2
GH02J080102 - 2:80102305:T:C 1.0384 Enhancer - Distance chr2:80102214-80102364
ATF3ARID1BCEBPBFOSSTAT3JUNDRCOR1MAFKBHLHE40
GH02J080284 - 2:80284624:C:T 1.1577 Enhancer - - chr2:80284436-80284636 -
GH02J080301 - None 0.0000 Enhancer - - chr2:80301212-80301605
EZH2
GH02J080303 - None 0.0000 Enhancer - - chr2:80303435-80303525
SUZ12KDM4AEZH2ASH2LRNF2MGANRF1SIN3AGATA2USF1
GH02J080304 - None 0.0000 Promoter - Physical Overlap (TSS) chr2:80304424-80304484
EZH2RAD21ASH2LTAF1KDM4ASIN3ACTCFRNF2
GH02J080306 - None 0.0000 Promoter - Physical Overlap (TSS) chr2:80304699-80304759
RAD21ASH2LKDM4ASIN3ACTCFSMC3
GH02J080305 - None 0.0000 Promoter - Physical Overlap (TSS) chr2:80305068-80305128
CTCFEZH2
GH02J080361 - None 0.0000 Enhancer - - chr2:80361995-80362125
TRIM28HMBOX1BRCA1BRD9PMLKDM1AHDAC1CTBP1MEIS2SMARCE1DPF2NCOA1SMARCA4CBFA2T3NFICTCF12MYCSOX6STAT5ATAL1HDAC2TRIM24ARID1BZEB2KLF16MTA2CBFA2T2CEBPBEP300GATA1NFE2TEAD4NCOR1
GH02J080421 - None 0.0000 Enhancer - - chr2:80421154-80421490 -
GH02J080495 - 2:80496395:C:CT 0.0077 Enhancer - - chr2:80495976-80497705
BHLHE40RAD51FOSYY1MYCJUNDSTAT3CEBPBRAD21
GH02J080546 - None 0.0000 Enhancer - - chr2:80546806-80546875
EP300TCF12FOSSTAT3
GH02J080555 - 2:80556509:C:A 0.8462 Enhancer - - chr2:80555739-80558227 -