GWAS Annotated Elements: CYFIP1

Gene: cytoplasmic FMR1 interacting protein 1

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH15J022778 YES 15:22778746:T:C 40.3985 Enhancer - C-HiC chr15:22778713-22779612
MLLT1ZNF316ATF3MAFKNFE2MAFFCEBPBC11orf30EHMT2DPF2MTA2ZNF592ARID1BCTBP1SMARCE1SMARCA4ZEB2HDAC1KDM1APKNOX1SOX6CBFA2T3MTA1MEIS2KAT8
GH15J022785 YES 15:22786139:C:T 38.0463 Promoter/Enhancer Elite eQTLs,C-HiC chr15:22785478-22787853
ZBTB33MLLT1CTCFKDM5AIKZF1CREB3L1SMARCA5ZNF24MIER1NFRKBDPF2MTA3CLOCKMLLT1L3MBTL2RNF2KDM1ATRIM22ZSCAN29HDAC2SMARCA4ZFXEZH2NBNEP400IKZF2CHD1ZNF687ASH2LRBM39ZNF579TRIM28FOXK2YY1MTA2MGAELF1POLR2ARELBZMYM3STAT1RBFOX2SMC3CHD4BCOREEDNRF1RBBP5CREMHDAC1MXI1ZNF143PHF20ZNF592SP1TAF1MYCATF7ESRRASKILRLFPOLR2GTBPZBTB40CTBP1ZNF207HNRNPLLPHF8GATAD2AGMEB1EGR1UBTFNR2F1RB1RESTGATAD2BMAXTRIM24THAP1GABPASIN3AE2F6PAX5RUNX3MEF2APMLPCBP1GABPB1HNRNPKSTAT3CEBPBEP300ZBTB7ANBNJUNDSMAD5BHLHE40RB1MYCZNF687FIP1L1MXI1AGO2ZFXMAXIKZF1HDAC1HNRNPLLZNF217MTA3HDAC6NRF1ZNF207BACH1SKILASH2LSIN3BKDM4ASUZ12HDAC2UBTFL3MBTL2DPF2TCF12EP300YY1RB1TAF15KDM1AGATAD2BCTBP1RLFSAP30EZH2E2F6MLLT1EEDTBPREST
GH15J022795 YES 15:22795211:C:T 24.3803 Enhancer - C-HiC chr15:22795121-22797441
RAD51GATA3POLR2ACTCFSMARCA5BCORMTA2IKZF1DPF2RELBMEF2ABCL11APOLR2ASPI1EBF1IKZF2MEF2BTBX21EEDASH2LARID3ACTCFTAF1POU2F2SKILIRF4YY1NFATC3TCF12ARNTSTAT5ANBNATF2ZBED1CHD1CBFA2T3TBL1XR1TBPCBFBBACH1JUNBETV6SMC3EP300NFICZNF384JUNDTBX21ATF7MEF2CZNF687RUNX3KLF5RAD21BATFZBTB33ELF1ZNF217MLLT1
GH15J022830 YES 15:22830913:T:C 31.5004 Enhancer - C-HiC chr15:22830843-22831172 -
GH15J022837 YES 15:22840146:T:C 26.0062 Promoter/Enhancer Elite C-HiC chr15:22837497-22841298
ZBTB33MLLT1RXRAE2F6EBF1NBNEEDZNF24TRIM22NCOA1SMARCC2DPF2RAD51FOXK2MEF2BNR2C1CTBP1MLLT1KDM1AMTA3ARID1BESRRASMARCA4ARNTUSF2ELF4ZEB2ZSCAN29NFATC3HDAC1CHD4MITFPHF8TRIM28CLOCKCC2D1ANCOR1ATF2PHF21ABCORZMYM3HDAC2MCM2ZBTB5NR2F1MTA2NFXL1ZNF217L3MBTL2SOX6TRIM24E2F8SMARCA5SMARCE1E2F7BRD9SKILZNF639RNF2ZNF579E2F1RBFOX2GMEB1RFX5IKZF2CTCFMAFKPOLR2ASREBF2EP400IKZF1MYBL2POLR2GSIN3ANRF1MAXMGAMYCRELBEP300RFX1TBPTAF1GATA4ZFXZNF687TAL1ZBTB40RAD21TCF12ETV4HDAC1E2F6GABPB1SP1TFAP4IRF1ZBTB33ATF3ELK1GABPAEGR1ZNF639E4F1HNRNPKMNTPCBP1ATF7ELF1CREB1U2AF1FUSATF2PRPF4CTBP1FIP1L1ZNF217BHLHE40ZNF143NEUROD1HNRNPLLCBFBRXRAZNF687SRFSMAD5JUNDPKNOX1FOXK2YY1RBM39ATF4CREMMXI1E2F8NR3C1MTA1C11orf30ASH2LSMC3ZBTB2PMLJUNSIN3BZHX2TBX3FOSRBBP5RESTMEIS2RBM22STAT3KDM5ANFRKBPHF20CEBPBMBD2ESRRADPF2MTA3HDAC2HCFC1ZKSCAN1KDM4AETS1EP400GATAD2BSAP30PHF8BRCA1UBTFMLLT1NFICRELBTRIM22HSF1USF2TAF7KDM5BZNF207CHD1AGO2RB1BACH1TCF7NR2F2SREBF1SMARCA5FOSL2MLLT1MXI1MYCMAXTBPRAD51CBX5MNTPOLR2ASMAD5ZNF263ZBTB40ZNF687HDAC1ZNF830NR2F6TAF1SKILIKZF2NCOR1ZBTB11SIN3AETV4MXI1ARNTELF1GABPAPOLR2GGABPB1RBFOX2CBFBZZZ3ZNF384MAXDACH1TFAP4E4F1NBNMEF2ASRFYY1ATF4MLLT1TCF12BHLHE40ELF4RELBPAX5TBPPOU2F2RUNX3SMARCC2IKZF1TRIM22MEF2BTBX21BHLHE40ATF7EBF1RAD51HNRNPKRAD51
GH15J022844 YES 15:22846386:G:GT 24.4656 Enhancer - C-HiC chr15:22844335-22846389
ZMYM3ZBTB33MLLT1ASH2LPOLR2AKDM5ATFAP4FOXA2BCL3NR2F6KDM1AFOXP1TCF7HNF4GFOXA2SP1EP300HDAC2CEBPBFOXA1ATF2SRFSMARCA4SIX5
GH15J022872 YES 15:22873190:G:A 22.0143 Enhancer - C-HiC,Distance chr15:22872655-22873921
MAFKZNF316BHLHE40FOSNFE2L2ASH2LNR3C1SMARCA4ESR1
GH15J022875 YES 15:22876831:T:TA 20.4036 Enhancer - C-HiC,Distance chr15:22875911-22877143
RFX1RFX5SMARCA4BHLHE40ATF2
GH15J022884 YES 15:22884499:T:C 24.4028 Enhancer - Distance chr15:22884342-22885470
CTCFATF4RAD21SMC3
GH15J022886 YES 15:22887380:C:A 24.2081 Enhancer Elite Distance chr15:22886683-22889626
ATF2ATF7SAP30HDAC1PKNOX1MNTTAF9BFOXK2MEIS2HMBOX1MAXPOLR2AMXI1ZNF318ATF3CBFA2T3MYCUSF2NFICE4F1STAT3FOSRFX1SMARCA4JUNJUNDSIN3ACEBPBBHLHE40EGR1SMARCA5EP400RNF2DPF2ATF3KDM1AMGACREB3L1CBFA2T3MNTTRIM24ARID1BTAF9BMYCFOXK2L3MBTL2MXI1FOSL2CEBPBZNF318JUNDJUNSOX6LEF1PKNOX1FOSE2F6EGR1SIN3ARAD51USF2BHLHE40MAXFOSL1MITFNFE2NFE2L2SMARCA4EP300USF1ATF4RCOR1CHAMP1SMARCA5BCORHDAC2ZBTB33MAFKNFE2CEBPBC11orf30ZNF384ZNF316
GH15J022891 YES 15:22891793:G:A 11.5873 Enhancer - Distance chr15:22891420-22891832 -
GH15J022892 YES 15:22892611:A:T 23.6244 Enhancer - Distance chr15:22892015-22892959
DPF2ZEB2RNF2TEAD4MTA2NCOR1IKZF1CBFA2T3TAL1GATA2ARID1BGATA1TCF12CBFA2T2HDAC2
GH15J022895 YES 15:22896607:C:T 21.6887 Enhancer - C-HiC,Distance chr15:22895237-22896894
POLR2ACTCFPKNOX1TCF12SIN3ACLOCKMEIS2ATF7JUNDKDM1AFOSL2ZNF217CREB1CTBP1CBFA2T2RAD51FOSTAL1USF2ATF3ZNF507MAXDPF2PBX3FOSL1ELF1BHLHE40SMARCE1CBFA2T3GATA3BATFJUNBSTAT3ARID1BRFX1MNTZNF687SREBF1MYCJUNFOXA1
GH15J022917 - None 0.0000 Promoter - Distance chr15:22917213-22917273
POLR2G
GH15J022918 - None 0.0000 Enhancer - Distance chr15:22918072-22918427
AGO2FOSL2JUNDFOS
GH15J022919 YES 15:22919322:A:G 20.7417 Enhancer - Distance chr15:22919297-22919447 -
GH15J022930 YES 15:22930734:G:A 16.1953 Enhancer Elite eQTLs,C-HiC,Distance chr15:22930697-22931514
FOSPOLR2A
GH15J022934 YES 15:22934348:A:G 6.8066 Enhancer - eQTLs,C-HiC,eRNA_co-expression,Distance chr15:22934144-22934516 -
GH15J022938 YES 15:22938830:G:A 22.7818 Enhancer - eQTLs,C-HiC,Distance chr15:22938775-22939535
POLR2A
GH15J022939 YES 15:22940422:A:G 22.2008 Enhancer - eQTLs,C-HiC,Distance chr15:22939568-22940781
POLR2A
GH15J022944 - None 0.0000 Enhancer - C-HiC,Distance chr15:22944837-22944987
CTCFMNTMYCNR3C1
GH15J022945 - None 0.0000 Enhancer - C-HiC,eRNA_co-expression,Distance chr15:22945283-22945541 -
GH15J022948 YES 15:22948034:G:A 23.8734 Enhancer - eQTLs,C-HiC,Distance chr15:22948000-22948400
SMARCA4ZNF316
GH15J022949 YES 15:22950852:G:A 24.1714 Enhancer Elite eQTLs,C-HiC,Distance chr15:22948551-22950907
ZNF316DPF2ZNF407SMARCA4NFATC3ZBTB5BCORNCOR1RNF2ARID1BRBFOX2TCF12HDAC2TAL1POLR2GCBFA2T2TEAD4EBF1CBFA2T3SP1MEF2BCTBP1EP300IKZF1MNTSIN3AMAXNR2F2HDAC1EGR1SAP30USF1MYCSTAT3FOXK2MXI1NR2F2RAD21HNRNPLCTCFZBTB33
GH15J022951 YES 15:22952167:A:G 16.0863 Enhancer Elite eQTLs,Distance chr15:22951000-22952308
HNRNPLCTCFRAD21NR2F2EGR1RXRASP1
GH15J022952 YES 15:22953653:A:G 23.8879 Enhancer - eQTLs,Distance chr15:22952748-22953867
ZNF316MAFKMAFFRBM39HDAC2SP1BACH1EP300BHLHE40JUNDTCF12HNF4A
GH15J022957 YES 15:22955505:G:A 12.4893 Enhancer Elite eQTLs,Distance chr15:22955400-22955600
HNRNPL
GH15J022955 - 15:22955890:A:AC 3.4148 Enhancer Elite Distance chr15:22955817-22955967 -
GH15J022956 YES 15:22956649:G:A 21.6110 Enhancer Elite eQTLs,Distance chr15:22956001-22957000
NR2F2SMARCA4SPI1
GH15J022959 YES 15:22960927:C:T 23.3933 Enhancer Elite Distance chr15:22959801-22962599
AGO2
GH15J022963 YES 15:22963556:TAAGA:T 17.5925 Enhancer Elite Distance chr15:22963482-22964999
CEBPBRCOR1ZBTB33SP1BHLHE40NR2F2ZNF444RXRARAD21CTBP1ESRRAESR1NCOA3
GH15J022965 YES 15:22965503:C:T 23.7025 Enhancer - Distance chr15:22965306-22966163 -
GH15J022967 YES 15:22968051:G:A 13.0405 Enhancer Elite Distance chr15:22967503-22969486
GATA3STAT3FOSJUNDCTCF
GH15J022973 YES 15:22973607:C:T 23.4033 Enhancer Elite Distance chr15:22973000-22973800
ZNF384IKZF1SP1TFAP4FOXA2HDAC2FOXA1HNF4GHNF4ARUNX3MAFKMAFFMEIS2
GH15J022974 YES 15:22974951:CA:C 22.9809 Enhancer Elite eRNA_co-expression,Distance chr15:22974200-22975428
SPI1EP300NR2F6
GH15J022975 YES 15:22975699:C:T 23.7072 Enhancer - Distance chr15:22975600-22975800
NR2F6
GH15J022977 YES 15:22977875:C:G 11.6095 Enhancer - Distance chr15:22977800-22978400 -
GH15J022978 YES 15:22981129:C:T 24.3347 Promoter/Enhancer Elite Distance chr15:22978684-22981396
CTCFEZH2ZBTB7AAGO2EEDHNRNPLLMYCPOLR2AEGR1BHLHE40SUZ12SIN3ANRF1MAXRBFOX2SAP30KDM5BMNTSMARCA4MXI1UBTFTAF1RNF2GABPAHDAC1POLR2GKDM4AE2F6SMC3EP300ATF7CHD1IKZF2STAT5APHF8IKZF1ZSCAN29TCF12HDAC2GMEB1SP1SMARCA4MLLT1ETS1NCOA6ASH2LZBTB2MGAL3MBTL2ZNF639MYCHDAC6EGR1ZFXE2F6HNRNPKPOLR2ATAF1ZBTB7AATF3IKZF1POLR2GMXI1ELF1SIN3AZBTB11ETV4FOSL2GABPAGATAD2BJUNDNRF1NR3C1ZNF263SKIFOSEP300TBPRBM39RAD21GABPB1JUNASH2LFOSL1SREBF2MTA3UBTFFUSSTAT3HNRNPLLZNF143RESTMYCKDM5BMAXNFXL1ESRRADPF2RBBP5EZH2CTBP1CTCFHNRNPLSMARCA4ZEB2PHF20FIP1L1TAF15KDM4BSP1RBM34ZNF217RNF2ATF7PCBP1ZEB1AGO2KLF5HDAC2ZBTB7AKDM1APRDM10CHD1NFICTFAP4DACH1ZBTB33
GH15J022990 - None 0.0000 Enhancer - Distance chr15:22989677-22989827
POLR2AEP300CTCF
GH15J022989 - 15:22990244:CCCCCTCCTCTT:C 5.3018 Enhancer - Distance chr15:22989855-22990291
POLR2AEP300CTCFRAD21
GH15J023036 - None 0.0000 Enhancer - Distance chr15:23036057-23036207
CTCFSIN3APOLR2ASMC3YY1RBFOX2DACH1ZNF143FOXK2L3MBTL2MNTXRCC5RAD21TFAP4MXI1MYCTRIM22SMARCA5ZBTB7AMAXRAD51
GH15J023038 YES 15:23039950:C:G 11.7426 Promoter/Enhancer Elite Distance chr15:23038170-23040338
ZBTB33C11orf30KDM1AFOSJUNDCREB1HDAC2FOXK2NFE2ZEB2MXI1SIN3ATAF1PHF21ARBM22RBM39RBFOX2MAXHNRNPLNRF1POLR2GPOLR2APHF8ZFXRFX1FUSBHLHE40ZNF217CTBP1RBBP5HDAC6SKILAGO1KDM4ALEF1RNF2CHD1ASH2LMNTZNF24EP300SMARCE1SREBF2GATAD2BDPF2IKZF1BACH1KDM5AZBTB7APRPF4TAF9BARID3ASIN3BAGO2MTA1HDAC1BRD4MGASMARCA5ZNF687FIP1L1GABPB1L3MBTL2ZSCAN29TCF12SKIYY1MTA3MTA2HDAC2XRCC5KLF5UBTFPMLATF7RESTHCFC1CBX1KDM5BMYCEP400SMAD5NFICTAF1GMEB1CTCFZNF207RBM34SP1ETS1SAFBELF1ZBTB33ZKSCAN1ELF4MBD2C11orf30TAF7SMAD1ZBED1CREMMEIS2NFRKBTBPCREB3L1TRIM22HNRNPLLIRF1TAL1JUNDATF2HDAC3POU2F2PKNOX1E2F1ZHX2EEDE2F6CLOCKRBM25SOX13NR3C1RB1FOSL2ZNF282E4F1EGR1TCF7L2GATA4RCOR1TCF7E2F4CBFBCBX3ZNF444RAD21BRCA1IRF5ZNF184PHF20NCOA1SIX5ARHGAP35ZHX1ZBTB40MAFFSMC3SMARCA4TEAD4NEUROD1SETDB1ASH1LZNF143HMBOX1ZBTB2ZNF24SMARCE1USF2ZNF830ETV4RUNX3ZSCAN29STAT1PRDM10MAFKRFX5NCOA6RNF2ZEB2