GWAS Annotated: FTO

Gene: FTO alpha-ketoglutarate dependent dioxygenase

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
FTOGH16J053040-16:53044095:G:A1.8662Enhancer388EliteTF_co-expressionchr16:53040838-53046056ENSR16_C794X, ENSR16_5GGTDG, ENSR16_9R3GX
EHMT2TCF12MCM3SRFHDAC2NANOGCHD7SP1POLR2ASIN3ARBBP5TAF1SUZ12TFAP4ZNF263CHD1GATA3IKZF1EP300SMARCA4HNRNPKMCM2TRIM22NFXL1PHF21AKDM1APOLR2APCBP2EGR1ZNF143EP300POLR2AZNF316CHD1MAFKCHD1RFX5RBM39POLR2ASIN3AZNF143CTCFRFX1JUNDTAF1NANOGHNRNPLTBPE4F1ASH2LYY1CHD7KDM1ASP1NR3C1ESR1RAD21FOXA2RXRAEP300FOXA1USF1ESR1FOXA1POLR2AJUNDGATA3FOXA1ESR1
FTOGH16J053664-16:53664390:C:T0.6670Enhancer118EliteDistancechr16:53664210-53666083-
IRF4BATFJUNBFOSRUNX3USF2CEBPBBHLHE40
FTOGH16J053666-16:53667452:C:T0.7715Enhancer1-Distancechr16:53666666-53667621ENSR16_9RB5L
FOXA1
FTOGH16J053692-16:53692910:A:C0.3049Enhancer173-Distancechr16:53692403-53693644-
CTCFZNF24ZFP91HMBOX1TRIM22RAD21SMC3TCF7L2MAFKC11orf30ZNF316
FTOGH16J053694-16:53694797:C:G0.1167Enhancer36-Distancechr16:53694771-53695852-
BCL3FOSNFE2L2
FTOGH16J053703-16:53703648:G:A0.7905Promoter/Enhancer574EliteDistancechr16:53703191-53705162ENSR16_9RBJ8, ENSR16_9RBJC, ENSR16_BDMQQ, RPGRIP1L_1, FTO_1
KDM5AFOXA1PHF8KDM4APHF20KDM1AZFXPOLR2AZNF207HDAC1EP400ARID3AAGO1RFX1TAF1MXI1HDAC2HNRNPLLRAD21NR3C1RBM22EP300ZNF143E4F1SIN3AAFF1RBFOX2HNRNPKZBTB7ATAF15SKILPCBP1CHD1TRIM22ZNF282CTCFMNTHCFC1MAXZNF592SIN3BPOLR2GU2AF1U2AF2FOXK2ZNF217TBPIKZF1MYNNATF2YY1RCOR1MYCTCF12BMI1GABPACTBP1MYBTBL1XR1RFX5RB1SRFSTAT1MBD2ELK1TBX3CREMSP1SIX5ETS1HNRNPLGATAD2BSUZ12SKINRF1XRCC5CREB3L1ZBTB11FOXA2RESTMEF2AELF1ARNTE2F4GABPB1FOXA1DACH1ZHX2IRF4RAD51PKNOX1RELBBHLHE40ATF7NEUROD1ZEB2ELF4IRF2ESR1HNF4GJUNDASH1LE2F1CREB1GMEB1CBFBHNF4AESRRADEAF1TFAP4GATA3MAFKETV4NBNHDAC3USF2ZBTB33IRF1FOSMTA1FOSL2EGR1ASH2LZNF444ZNF24BRCA1NR2C1EEDZNF184PYGO2USF1ZBTB40IKZF2CBX3RUNX3HNRNPH1L3MBTL2FOSL1THAP1RBM39MGAARHGAP35ZHX1IRF5ZNF207FIP1L1RNF2TBX21POLR2GKDM4BSAP30PHF8E2F6ZNF384SMARCA4PHF20KDM5ABCORCBFA2T3GATA3ARHGAP35
FTOGH16J053713-16:53713483:A:C1.2252Enhancer166-Distancechr16:53713349-53715380ENSR16_83KM99, ENSR16_BDMS7
MAFKMAFFZNF263FOXA1TRIM28CREMEP300CTBP1ARNTSMARCA4
FTOGH16J053723-None0.0000Enhancer63-Distancechr16:53723038-53723373-
SMARCA4
FTOGH16J053726-16:53727000:A:C0.1479Enhancer99-Distancechr16:53726385-53727245ENSR16_9RBQX
TRIM28NR2C1NR2F6NR2F2SMARCA4NR2F1FOXM1MYBL2RFX5PKNOX1
FTOGH16J053732-None0.0000Enhancer171-Distancechr16:53732068-53733159ENSR16_BDMWS
TRIM28GABPATCF7L2BCL3ATF3NFXL1ZBTB33GATA2SP1RXRAJUNDELF1ZNF217RESTGATA3ETS1TCF12RCOR1DPF2CBFA2T3SIN3ANCOA3CREB1NR2F2RAD21ESR1FOXA2SMARCE1FOXA1NR3C1CTBP1MBD2FOSL2MAFKCEBPBZNF24
FTOGH16J053741-16:53742028:A:G0.4330Enhancer105-C-HiC,Distancechr16:53741417-53742790-
CHD4ASH2LZBTB40HNF4AMAFFARID3AFOXA1FOXP1FOXA2CTCF
FTOGH16J053743-16:53746190:C:T0.3940Enhancer319EliteC-HiC,Distancechr16:53743965-53746758ENSR16_9RBZ5, ENSR16_5GMBG8, ENSR16_C7BZS
CREMMTA2ETV4EP300JUNDCREB1TBX3FOXP1CTCFTCF7ELF1SPI1FOXA2ARID3AFOXA1FOSL2GATA3TCF7L2POLR2AFOSSTAT3EP300IKZF2IKZF1ETV6ARID3ARUNX3JUNBJUNDBATFFOSCTCFSP1RAD51NFYBZNF143USF2USF1MITF
FTOGH16J053755-16:53756269:C:G0.8430Enhancer317EliteDistancechr16:53755200-53757353ENSR16_9RC49, ENSR16_BDN3B
PKNOX1CTCFSTAT3FOSRAD51USF1MYCCHD4CEBPBKDM1ANCOR1EP300SP1HNF4ATCF7L2HNRNPUL1TFAP4ARID3AFOXA1SOX13HNF1AESR1FOXA2JUNDNR3C1PKNOX1
FTOGH16J053765-16:53767584:A:AT1.1566Enhancer265EliteDistancechr16:53765661-53767720ENSR16_9RC7J
EHMT2ASH2LZHX2ZNF24KDM1AHDAC2ZMYM3CHD4TBX3MITFSKIMAXNR2F6TFAP4TBL1XR1RBFOX2CREMBHLHE40TCF7EP300USF2USF1MAFKSP1RAD51FOXA1RXRAFOXA2NCOR1ETV4FOSL2JUNDATF3NFE2L2STAT3FOSKAT2B
FTOGH16J053767-16:53769244:G:A0.9168Enhancer320EliteDistancechr16:53767863-53770101ENSR16_BDN52
SMARCE1SIN3ATCF7L2POLR2AKDM1AARID1BJUNBGABPAFOSBCL3JUNDJUNATF3ETS1SIX5BATFRESTDPF2GATA3STAT3FOSL2TCF12FOXA1MYCSP1RFX1BHLHE40ESR1NR3C1EP300HDAC2KDM1AZMYM3RBM25PKNOX1
FTOGH16J053772-16:53773852:A:G0.7747Enhancer351EliteDistancechr16:53772788-53774899ENSR16_BDN5P, ENSR16_5GMHDL
MAXCTCFCHD4KDM5AZNF384GATA1TRIM28RAD21HNF4ASP1FOXA2SMC3ZNF316ASH2LPOLR2ARESTGATA3TRIM22MAFKGATA2ARID3ANFE2FOXA1MYCDACH1ZNF143STAT3NFE2L2MAFFPKNOX1MNTTBX3TFAP4KDM1AZKSCAN1EP300HNF1ATCF7NR2F6FOXA2FOXA1
FTOGH16J053775-16:53775949:A:G0.8764Enhancer340EliteC-HiC,Distancechr16:53775215-53777921ENSR16_BDN64
ATF3RAD51SPI1GATA3GATA2NR2F2RCOR1CTCFJUNDESR1CREMTCF12TCF7L2FOSL2KDM1AZBTB33RESTSKIFOXA1FOXA2TCF7NR2F6TBX3KAT2BASH2LBCL3YY1MAFKMAFFPOLR2ARXRARAD21NR3C1HNF4AEP300ZNF24TBPMAXHDAC2ARID3ASP1ESR1SMC3MYCCTCFCEBPBHNF4GFOSGATA3FOXA1ZNF316FOXA1MAFKMAFF
FTOGH16J053778-16:53780558:C:T1.3935Enhancer369EliteC-HiC,Distancechr16:53778575-53783407ENSR16_83KNNS, ENSR16_9RCCQ
SP1ZKSCAN1ZMYM3YY1FOSPOLR2ATCF12STAT3SP1FOXA2ATF3KDM1AZNF217FOXK2JUNDNR2F6FOXA1CTBP1ARID3ADPF2HNF4AESR1RXRAMBD2SMARCE1TCF7EP300TBX3ZNF384FOSL2CEBPBGATA3SP1RXRARAD21GATA3FOXA1FOXA2HNF4G
FTOGH16J053784-16:53784548:G:T0.5623Enhancer98EliteC-HiC,Distancechr16:53784408-53784558ENSR16_9RCDL
JUNDFOSMTA2
FTOGH16J053789-None0.0000Enhancer36-Distancechr16:53789288-53789438ENSR16_9RCG3
CTCFCEBPB
FTOGH16J053804-16:53804746:G:A1.4783Enhancer56-Distancechr16:53804400-53804800-
SPI1FOXA2EP300FOXA1ZNF384
FTOGH16J053808-16:53808800:G:A1.2419Enhancer126-C-HiC,Distancechr16:53808717-53810057ENSR16_BDNBX
JUNDCTCFPKNOX1GATA3MAFKFOXA1CEBPB
FTOGH16J053815-16:53816991:C:T0.9532Enhancer195EliteeQTLs,Distancechr16:53815937-53818968ENSR16_83KPGP, ENSR16_C7C73
NR3C1ZNF24TCF12SIN3AJUNDTBPMYCBHLHE40CEBPBSMC3FOSRAD21FOSL2SP1GATA3RCOR1JUNDSIN3A
FTOGH16J053820-16:53822032:T:C0.7529Enhancer192EliteDistancechr16:53820938-53823806ENSR16_C7C7C, ENSR16_9RCRT
FOSJUNDSP1FOSL2FOSCTCFCEBPBCBFA2T3HDAC1MEIS2MITFKDM1ANFICCTCFRUNX3
FTOGH16J053827-None0.0000Enhancer36-Distancechr16:53827888-53827958ENSR16_83KPPF
NANOG
FTOGH16J053846-16:53847132:C:T0.1611Enhancer1-Distancechr16:53846800-53847400--
FTOGH16J053864-16:53865651:C:T0.7294Enhancer254EliteDistancechr16:53864115-53867101ENSR16_BDNM2
NFIBNFICLCORLDPF2FOSFOSL2MYCBACH1JUNDNFE2STAT3MAFKPOLR2AMTA2SPI1IKZF1IRF4SOX6JUNBSTAT3DPF2SP1FOSHDAC1ZNF24HMBOX1ETV6SMARCE1MTA1C11orf30ARID1BZEB2BATFNCOR1TAL1E4F1NCOA1FOXA1EP300MTA2GATA2FOXK2NR3C1JUNDTCF12KDM1AJUNMAFKPKNOX1CBFA2T3SMARCA4ZNF316CHAMP1FOXM1MEIS2GATAD2ACUX1EHMT2ATF7CREB1ATF2
FTOGH16J053872-16:53872315:G:A0.7544Enhancer82-Distancechr16:53872275-53873406ENSR16_9RDC8
SPI1SPI1JUNDCEBPBFOSMAFK
FTOGH16J053874-None0.0000Enhancer9-Distancechr16:53874259-53874324--
FTOGH16J053880-16:53880515:C:G0.5133Enhancer292EliteDistancechr16:53880463-53882963ENSR16_9RDFP
RBFOX2L3MBTL2ASH2LRFX1ZNF592FOXA1EP400ATF7POLR2AJUNDNR2F1HDAC1CHD4FOSTBPPOLR2GSP1MYCATF4SKIRXRANCOR1RAD21TBX3TFAP4STAT3ARID3AATF3TRIM24HNF1ACEBPBEP300SMC3HNF4GHNF4AFOXA2HDAC2NR2F6FOXA1KDM1AEHMT2CTCFHNF1A
FTOGH16J053892-None0.0000Enhancer264EliteDistancechr16:53892000-53892401ENSR16_BDNQW, ENSR16_5GN8R7
GATA3GATA2CTCFFOSL2RAD21TRIM22RESTSMC3HDAC2ZNF143FOXA2EP300
FTOGH16J053894-None0.0000Enhancer264EliteDistancechr16:53894199-53894401ENSR16_9RDKD
JUNDZNF316FOSMAFKC11orf30STAT3MAFFNFE2L2MYCBHLHE40RAD21CEBPBFOXA1
FTOGH16J053895-None0.0000Enhancer187EliteDistancechr16:53895300-53895912-
RAD21EP300
FTOGH16J053899-16:53900060:C:T1.2354Enhancer105-Distancechr16:53899086-53900307-
HNF4AARID3AFOXA1CEBPBFOXA2ZNF384SP1HNF4A
FTOGH16J053904-16:53905491:G:A1.0304Enhancer1-Distancechr16:53904385-53905686-
JUNDRUNX3TCF7
FTOGH16J053911-16:53913958:G:A0.6203Enhancer355EliteDistancechr16:53911748-53914204ENSR16_9RDQM, ENSR16_BDNTX, ENSR16_83KRKB
CTCFSPI1MYCFOXA1HNF4AFOSIKZF2TRIM22DPF2STAT3NFATC3BHLHE40MTA2RUNX3EP300TBX21FOSBCL11APOLR2AMYCIKZF1PKNOX1CTCFTRIM22TBX21MTA2EP300POLR2AYY1STAT3JUNDHNF4AATF3CEBPBNFE2L2FOSMAFKRAD21ELF1
FTOGH16J053914-16:53914586:CA:C0.6049Enhancer242EliteDistancechr16:53914288-53916386-
ELF1MAFK
FTOGH16J053923-None0.0000Enhancer194EliteDistancechr16:53923211-53923604ENSR16_9RDTQ
PKNOX1
FTOGH16J053931-16:53932151:A:G0.3494Enhancer99-Distancechr16:53931797-53935221-
CTCFPKNOX1FOXA2EP300
FTOGH16J053935-16:53936268:C:A1.0001Enhancer36-Distancechr16:53935559-53936639--
FTOGH16J053936-None0.0000Enhancer36-Distancechr16:53936648-53936798--
FTOGH16J053947-None0.0000Enhancer233EliteDistancechr16:53946028-53946178ENSR16_83KS8S, ENSR16_5GNL2J
CTCFKDM5ASKICHD4SMC3RESTARID3AEHMT2TRIM22ZNF143ATF7RAD21YY1SPI1KLF16EP300HNRNPKATF2ATF4ELF1ZNF384CEBPBFOXA1FOXA2ATF3JUND
FTOGH16J053946-16:53946762:C:A0.1763Enhancer277EliteDistancechr16:53946515-53947398ENSR16_9RF5N
CTCFCHD4PKNOX1
FTOGH16J053952-16:53953703:A:G0.5215Enhancer353EliteDistancechr16:53952388-53954281ENSR16_BDP4M
YY1SP1MEIS2RXRAMAXHNF4AMYCIRF1IRF2STAT3FOSGATA3
FTOGH16J053960-16:53960728:C:T1.8003Enhancer267EliteDistancechr16:53960145-53962031-
GATA3TRIM28GATA2RAD21ZNF384CTCFPKNOX1
FTOGH16J053964-None0.0000Enhancer1-Distancechr16:53964548-53964698-
RXRA
FTOGH16J053968-None0.0000Enhancer36-Distancechr16:53968124-53969348ENSR16_9RFCX
SMC3CEBPBSMARCA4
FTOGH16J053971-16:53971662:A:G0.4399Enhancer1-Distancechr16:53971311-53972227-
CTCF
FTOGH16J053978-16:53979566:T:C0.6702Enhancer56-Distancechr16:53978951-53980902-
HMBOX1
FTOGH16J053982-16:53984189:G:A0.2984Enhancer121-Distancechr16:53982074-53984383-
YY1RXRASP1GATA3RESTNR2F6NR2F2RAD21HNF4AFOXA1JUNDZNF384FOSFOXA2
FTOGH16J053986-None0.0000Enhancer63-Distancechr16:53986852-53987077-
RCOR1
FTOGH16J053987-16:53990277:G:A1.7966Enhancer71-Distancechr16:53987598-53990662-
ZKSCAN1
FTOGH16J053990-16:53992292:A:T0.2336Enhancer312EliteDistancechr16:53990967-53992861ENSR16_C7CMM
SMARCA4CREMPKNOX1EP300FOXA2RAD21FOXA1SP1
FTOGH16J053994-16:53995666:A:C1.2213Enhancer36-Distancechr16:53994908-53996749--
FTOGH16J054022-16:54022837:T:G0.1271Enhancer63-Distancechr16:54022578-54022906--
FTOGH16J054026-16:54027242:C:A1.4133Enhancer199EliteDistancechr16:54026412-54028556ENSR16_BDPHG
GATA2CEBPBFOSL2JUNDFOSTBPMAFKNFE2L2CEBPBGATA2GATA3
FTOGH16J054040-16:54040678:A:G1.2075Enhancer198-Distancechr16:54040641-54040758-
CHD4EHMT2CREMKDM1AFOXA2SP1HNF4GEP300USF1HDAC2ELF1ETV4RAD21HNF4A
FTOGH16J054049-16:54051515:C:T0.8621Enhancer235EliteDistancechr16:54049116-54052195ENSR16_D4NDX, ENSR16_83KWJ5
GATA3GATA2L3MBTL2EP300PKNOX1YY1RCOR1MNTHDAC2EGR1SP1JUNDCTBP1PKNOX1ZNF384JUNDCEBPB
FTOGH16J054053-16:54053584:G:A0.1435Enhancer63EliteDistancechr16:54053468-54053618--
FTOGH16J054055-16:54056117:C:A1.2102Enhancer99-Distancechr16:54055571-54057459-
GATA2EHMT2FOSJUNDMAFK
FTOGH16J054057-16:54057653:G:A1.1662Enhancer1-Distancechr16:54057610-54058233--
FTOGH16J054058-16:54059269:G:T1.1541Enhancer366EliteDistancechr16:54058701-54060209-
TRIM28GATA3PKNOX1LEF1ARNTCTBP1L3MBTL2RCOR1
FTOGH16J054062-16:54062570:G:T0.1359Enhancer153EliteDistancechr16:54062466-54062638ENSR16_C7CSR, ENSR16_5GPBZJ
CTCFRAD21SMC3EP300MXI1GATA3
FTOGH16J054067-16:54067492:G:A1.0886Enhancer232-Distancechr16:54067356-54067711-
KDM1ASKICREMHDAC2FOXA1NR2F6FOXA2TCF7ARID3ATBL1XR1EP300
FTOGH16J054072-16:54072059:G:A1.0338Enhancer56-Distancechr16:54072035-54072982-
SMARCA4EP300
FTOGH16J054076-16:54077097:C:T0.9307Enhancer267EliteDistancechr16:54076853-54078209ENSR16_BDPQP
PKNOX1USF2USF1SP1STAT3POLR2AFOSL2CREB1FOSJUNDMYCRCOR1POLR2AGATA2
FTOGH16J054079-16:54080305:C:T1.2195Enhancer351EliteeQTLs,Distancechr16:54079758-54081683ENSR16_BDPR7
ASH2LPOLR2ACUX1NRF1TBPCREMZHX2GATA3XRCC5DPF2BCL3KDM1AZNF687SP1FOSEGR1TFAP4MNTCREB1HNF4ASKIATF7MAXJUNDMBD2TBX3SOX13STAT3ARID3AZNF217FOXA2MAFKFOXA1EP300ETV4HNF1ANEUROD1RXRARNF2SMARCE1ETS1CTBP1NCOA3TCF7HNF4GCCAR2MYCNFE2L2MAFFFOSL2BHLHE40HDAC2TCF12ESR1CEBPBRAD21SMC3NR2F6NR3C1USF1USF2FOXA2FOXA1ESR1
FTOGH16J054098-16:54099888:C:T0.6118Enhancer56-eQTLs,Distancechr16:54098738-54100045-
HNF4G
FTOGH16J054105-None0.0000Enhancer111-Distancechr16:54105893-54106356-
CEBPBSMARCA4TBX3
FTOGH16J054109-None0.0000Enhancer187EliteDistancechr16:54109941-54110955--
FTOGH16J054123-16:54124029:C:T0.2148Enhancer1-Distancechr16:54123574-54124458--
FTOGH16J054125-None0.0000Enhancer151-Distancechr16:54125248-54125378-
KDM1AYY1RXRARAD21ZBTB33FOXA2HNF4AEGR1SP1ATF3CHD4ZNF384FOXA1NRF1JUNDGATA3POLR2ACEBPB
FTOGH16J054126-16:54126166:T:C0.6978Enhancer146-Distancechr16:54125674-54126598ENSR16_9RH3J
CHD4YY1ZBTB33JUNDRAD21HNF4AHNF4GRESTMAXRXRAFOXA2SP1ATF3EGR1ZMYM3
FTOGH16J054134-16:54134981:G:A0.0927Enhancer118EliteDistancechr16:54134904-54136793ENSR16_BDQ47
GATA3FOSJUNDSTAT3GATA2STAT3