GWAS Annotated: GALNT18

Gene: polypeptide N-acetylgalactosaminyltransferase 18

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
GALNT18GH11J011147-11:11148015:C:T1.0537Enhancer192EliteeQTLschr11:11147401-11149197ENSR11_54LRH5, ENSR11_B47PT
ZNF316CTCFATF3MITFPOLR2AEP300JUNDUSF1ZNF143RAD21TAF1USF2RXRANR2F2YY1SP1CEBPBTCF12NR3C1FOXA1HNF4A
GALNT18GH11J011149-11:11149576:G:A0.8966Enhancer95EliteeQTLschr11:11149253-11150750ENSR11_8BSZF
CEBPB
GALNT18GH11J011279-11:11280148:C:G0.4272Enhancer161EliteDistancechr11:11279667-11281005ENSR11_B48FZ
HDAC2FOSNANOGFOXA1FOXA2
GALNT18GH11J011304-11:11304757:G:A0.3406Enhancer41-Distancechr11:11304589-11304835-
PKNOX1USF1
GALNT18GH11J011313-11:11313968:C:T0.4858Enhancer178EliteDistancechr11:11313058-11314932ENSR11_96H8L, ENSR11_7MXZX
CTCFRAD21CTCFBHLHE40C11orf30ZNF316FOSMYCSP1NFE2L2MAFKEP300CEBPBNFE2POLR2AYY1JUNDRXRAHNF4ANR2F2
GALNT18GH11J011347-None0.0000Enhancer1-Distancechr11:11347673-11347823ENSR11_96HLH-
GALNT18GH11J011348-11:11348846:C:A1.3347Enhancer99-Distancechr11:11348580-11350683ENSR11_96HLW, ENSR11_B48S4
TEAD4NR2F2TAL1CBFA2T2CBFA2T3SP1RCOR1RXRARAD21EP300NR2F2RESTGATA2FOSMAFK
GALNT18GH11J011357-11:11357108:G:A0.4760Enhancer6-Distancechr11:11356999-11357383--
GALNT18GH11J011370-11:11370367:A:C0.0581Enhancer56-Distancechr11:11370000-11370400-
CEBPBATF7MTA2SPI1
GALNT18GH11J011391-11:11391708:C:T0.9513Enhancer194EliteDistancechr11:11391471-11392583ENSR11_B4936
ZMYM3KDM1ARCOR1RBM25CTCFFOSL2BHLHE40FOSUSF2MYCCEBPBEZH2REST
GALNT18GH11J011395-11:11397213:A:C1.0957Enhancer194EliteDistancechr11:11395804-11397415ENSR11_B493R
ATF3ATF2JUNDATF7FOSBHLHE40SMC3CEBPBCTCF
GALNT18GH11J011400-11:11400360:G:A1.4919Enhancer1-C-HiC,Distancechr11:11400273-11400423--
GALNT18GH11J011401-11:11401000:G:T0.7159Enhancer56-C-HiC,Distancechr11:11400993-11401143ENSR11_8C3CS, ENSR11_54NDWK
CTCFRAD21YY1SMC3ZNF143
GALNT18GH11J011409-11:11407177:G:A0.1000Enhancer118EliteDistancechr11:11407073-11407403ENSR11_B495C
EZH2RXRAHNF4AEP300POLR2AGATA2RCOR1RFX5MXI1SPI1SMARCA4CTCF
GALNT18GH11J011407-11:11407643:G:C0.5527Enhancer133EliteeQTLs,Distancechr11:11407533-11407683ENSR11_B495C
EZH2POLR2AGATA2RCOR1RFX5SMARCA4CTCFEP300RAD21
GALNT18GH11J011408-11:11409168:G:C0.4782Enhancer36-Distancechr11:11408903-11409697ENSR11_96J97
GATA2GATA1
GALNT18GH11J011415-11:11417006:C:G0.5984Enhancer161EliteDistancechr11:11415633-11417163ENSR11_96JCB, ENSR11_B496Q
EP300IKZF2IKZF1EEDRUNX3GABPASPI1FOSL2STAT3JUNDMYCCEBPBFOS
GALNT18GH11J011421-11:11422424:T:C1.1642Enhancer36-Distancechr11:11421782-11422811ENSR11_96JF6
FOXA2FOXA1STAT3CEBPBMYC
GALNT18GH11J011426-11:11427902:T:C0.1243Enhancer206EliteDistancechr11:11426240-11428329ENSR11_B4985, ENSR11_54NK8K, ENSR11_B4989
CTCFFOSNFICLCORLNFIB
GALNT18GH11J011429-11:11431314:C:T0.4105Enhancer1-Distancechr11:11429333-11432343-
EZH2
GALNT18GH11J011450-11:11451898:C:T1.3891Enhancer164-Distancechr11:11450155-11452408ENSR11_C35ND, ENSR11_54NPL3
ZNF263MAFKRCOR1CEBPBATF3FOSL2JUNDFOSBHLHE40CTCFNFYBSP1RESTCEBPBRAD21GABPAPKNOX1TRIM22NR2F2JUNDNCOR1ZBTB33CUX1ARID3AYY1HNF4ARXRAEGR1NR2F6DPF2FOXA1ZBTB40HNF1AHNF4GKLF5
GALNT18GH11J011454-None0.0000Enhancer121-Distancechr11:11454793-11454923ENSR11_8C4J2
ZNF217SIN3ADPF2CTBP1GATA3MNTFOSNCOA3ESR1FOXA1MYCPKNOX1
GALNT18GH11J011462-11:11463992:A:G0.4222Enhancer203-Distancechr11:11462892-11464270ENSR11_B49FH
ZNF263TRIM28SMARCA4PKNOX1RCOR1MEIS2ARNTCTBP1
GALNT18GH11J011501-11:11502488:G:A0.5506Enhancer82-Distancechr11:11501328-11503086ENSR11_C35S3
POLR2ASMARCA4MXI1SP1SMC3RAD21HNF4ARXRAEP300
GALNT18GH11J011510-11:11511116:T:TC0.4415Enhancer149-Distancechr11:11510613-11511760ENSR11_B49ND
EP300POLR2ASMARCA4CEBPB
GALNT18GH11J011512-None0.0000Enhancer1-Distancechr11:11512233-11512383-
POLR2ASMARCA4
GALNT18GH11J011513-None0.0000Enhancer1-Distancechr11:11512527-11512923-
SMARCA4POLR2A
GALNT18GH11J011516-None0.0000Enhancer1-Distancechr11:11513033-11513183--
GALNT18GH11J011515-11:11513449:T:C0.2316Enhancer105-Distancechr11:11513413-11513763-
PKNOX1CEBPBSTAT3EP300
GALNT18GH11J011514-11:11514333:T:C0.5172Enhancer1-Distancechr11:11513979-11514858ENSR11_8C5RF
REST
GALNT18GH11J011520-11:11520922:A:G0.2121Enhancer36-Distancechr11:11520910-11521229--
GALNT18GH11J011521-11:11521474:C:T0.1647Enhancer1-Distancechr11:11521281-11522007--
GALNT18GH11J011532-None0.0000Enhancer1-Distancechr11:11532713-11532863ENSR11_96KL2-
GALNT18GH11J011534-11:11536651:C:CA0.4269Enhancer160EliteDistancechr11:11534713-11536894ENSR11_96KLP
CTCFRAD21EP300EZH2POLR2A
GALNT18GH11J011537-11:11539220:G:A1.5886Enhancer161EliteC-HiC,Distancechr11:11537198-11539322ENSR11_96KMN
TRIM28MXI1NR2F2SP1SMARCA4POLR2ARAD21ZNF263
GALNT18GH11J011543-11:11543456:C:T1.6427Enhancer1-Distancechr11:11543164-11544570--
GALNT18GH11J011545-None0.0000Enhancer56-Distancechr11:11545753-11545963-
CTCFMEF2BSMARCA4EBF1
GALNT18GH11J011552-11:11552263:T:C1.2634Enhancer63EliteDistancechr11:11552234-11553314-
CTCF
GALNT18GH11J011557-11:11557910:G:A0.3031Enhancer36-Distancechr11:11557378-11558194-
CTCF
GALNT18GH11J011558-11:11558847:G:A1.1044Enhancer91-Distancechr11:11558325-11559659ENSR11_8C6PZ
CTCFMYCEP300IKZF1
GALNT18GH11J011561-11:11562792:C:G1.6501Enhancer56-Distancechr11:11561825-11563906-
ATF2MNT
GALNT18GH11J011567-11:11568164:G:A1.2783Enhancer270EliteC-HiC,Distancechr11:11567354-11571175ENSR11_C35ZS, ENSR11_8C6ZL, ENSR11_54PGW8, ENSR11_96KZT
RAD51FOSMYCUSF2EP300ZNF687ATF7JUNDEP300STAT3FOSUSF2IKZF1RAD51SREBF1POLR2AFOSSTAT3BATFMYCPKNOX1IKZF2IKZF1GABPANR2F2SPI1TAF1RAD21MAXSP1CTCFRESTPOLR2AFOSFOS
GALNT18GH11J011577-11:11577532:G:C0.2474Enhancer63EliteDistancechr11:11577400-11577600ENSR11_8C75X
POLR2ARESTFOS
GALNT18GH11J011578-11:11579480:T:C0.7023Enhancer82-eQTLs,Distancechr11:11578500-11579935-
SMARCA4CTCFNR2F2RAD21YY1MAX
GALNT18GH11J011580-11:11580629:T:G0.7511Enhancer121-eQTLs,Distancechr11:11580272-11583618ENSR11_7NDG3, ENSR11_54PJWX, ENSR11_54PK32
YY1MAXRAD21NR2F6NR2F2EZH2HNF4AHNF4GRXRASP1SMARCA4MXI1GATA2ZNF316SMARCA4RAD21EZH2
GALNT18GH11J011583-11:11585139:G:T0.4754Enhancer240EliteC-HiC,Distancechr11:11583875-11585608ENSR11_B4B42, ENSR11_8C7BC
EZH2IKZF1SPI1NR3C1EZH2EP300FOXA1USF2TCF12RCOR1MYCJUNDFOSBHLHE40MAFKFOSL2SP1FOSCEBPB
GALNT18GH11J011587-11:11587375:T:C0.3202Enhancer63EliteC-HiC,Distancechr11:11587094-11587712-
EP300
GALNT18GH11J011592-None0.0000Enhancer1-C-HiC,Distancechr11:11592289-11592917-
EP300
GALNT18GH11J011608-11:11608669:T:C0.1015Enhancer140-eQTLs,Distancechr11:11608478-11609380ENSR11_96LF4
FOSL2FOSJUNDNFICNFIBSMAD1CTCFLCORL
GALNT18GH11J011611-11:11611438:A:T0.3787Enhancer1-Distancechr11:11611345-11612007ENSR11_8C7TL-
GALNT18GH11J011619-None0.0000Enhancer111-Distancechr11:11619113-11619263ENSR11_96LJ2, ENSR11_54PRBK
CTCFSP1TRIM22RXRAPOLR2AMEF2BRAD21MNTMXI1BHLHE40L3MBTL2RAD51CLOCKMITF
GALNT18GH11J011620-11:11621145:G:A0.5491Promoter/Enhancer601EliteeQTLs,eRNA_co-expression,Distancechr11:11620143-11623237ENSR11_54PRHL, ENSR11_96LJW, ENSR11_96LK4, GALNT18_2, GALNT18_1
NR3C1ZNF263KDM4ANRF1MXI1IKZF1ELF1POLR2ATAF1YY1SP1RAD21EZH2TRIM28STAT3MAXEP300CTCFDPF2ZFXRBBP5MXI1MTA2RAD51BHLHE40ZNF687L3MBTL2EP300RAD21HDAC2USF2RUNX3YY1SUZ12MYCUSF1BACH1ZNF143ETS1SMC3HDAC6MNTZNF207ZBTB33SIN3ARBM22EGR1KDM4ARNF2TAF1MXI1RESTEP300SIN3ARFX1CTBP1PKNOX1RAD21CTCFBACH1SMC3MYCUBTFATF7TAF7ELF1FUSTBPSTAT1PCBP1YY1DPF2SP1L3MBTL2MBD2HNRNPKXRCC5TCF12RBM25E2F6IRF3NRF1NEUROD1NFYBMEF2BIRF1PBX3CREMNR3C1ZBTB7AZNF143RBM39RB1RBBP5IKZF2HNRNPLLRELBIKZF1GATAD2BEGR1EBF1KDM4ABHLHE40GATA2FOXA2EP300FOXA1NR3C1POLR2A
GALNT18GH11J011657-None0.0000Enhancer1-C-HiCchr11:11657673-11657823--
GALNT18GH11J011972-11:11982821:T:C1.1091Enhancer383EliteeQTLschr11:11972542-11984168ENSR11_B4D6B, ENSR11_C374D, ENSR11_54S3LB, ENSR11_C374K, ENSR11_8CHRJ, ENSR11_96QFC, ENSR11_8CHSX
ESR1TCF7L2RESTHNF4APOLR2ANR2F2YY1SP1RXRAEP300JUNDRAD21ATF3GATA1STAT3POLR2ARBM25ZMYM3CTCFRAD21RXRAMAXHNF4AHNF4GNR2F2SP1SP1ETS1TAF1TCF12PKNOX1JUNDFOSL2EP300POLR2ARESTRAD21ESR1FOSSIN3ANR3C1TBPSPI1ZMYM3POLR2AL3MBTL2SMARCA4NR2C1RCOR1RAD51RESTUSF2CTCFUSF1GABPB1GATA2IKZF1FOSSMC3RCOR1YY1RFX5RAD21CEBPBSIN3ANR3C1SMC3HNF4AGATA2POLR2AFOSYY1FOSFOXA1JUNDEP300