GWAS Annotated: GCNT1

Gene: glucosaminyl (N-acetyl) transferase 1

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
GCNT1GH09J076372-9:76373083:A:G0.7996Enhancer304EliteeQTLschr9:76372586-76376124ENSR9_BK68F, ENSR9_BK68M
SIN3AHDAC1ASH2LZHX2YY1HNF4AEHMT2RESTGABPASP1RXRASIN3APOLR2AZBTB33XRCC5CREMCTCFETV4FOXA2ATF3EGR1CCAR2ATF7KDM1ALCORLNCOR1NR3C1MAXRAD21HDAC2TBL1XR1EP300ARID3AETS1CBFA2T3SKIESRRAHNF4GTCF7JUNDTCF12CEBPBFOXA1CBFA2T2SMC3RFX5USF1NR2F6TBPFOSL2NR2F2TFAP4MAFKBATFFOXA1FOXA2L3MBTL2CHD4MAXTAF1ATF7ZHX2KDM1AZNF263GABPACTBP1CREB1NFIBNR2F6MNTRESTHDAC1BCL3ARID1BE2F1JUNDZBTB33POLR2AIKZF1TBX3SKINCOR1NR2F2RAD21ATF3RXRAZNF217ETS1EGR1FOXA1FOXA2TCF12RFX5SP1GATA2SIN3ADPF2FOXK2RCOR1SPI1NBNEP300ELF1MAFFSMARCE1NR3C1ATF2CEBPBFOSHNF4ANR2F1FOSL2BHLHE40NFE2L2CREMMEIS2
GCNT1GH09J076378-9:76380142:T:A0.8210Enhancer164-eQTLschr9:76378143-76380444ENSR9_935BJL
CTCFRESTATF7ATF2ATF4ATF3CEBPBGATA3RFX1SP1SIN3AFOSL2CTCFPKNOX1JUNDSTAT3RCOR1MYCELF1CREB1NEUROD1NCOA3FOSGATAD2BATF7SMARCE1FOXA1MNTTCF12MTA1ESRRADPF2CTBP1ZNF217SPI1MAFKZBTB33
GCNT1GH09J076392-9:76393368:A:G0.7781Promoter/Enhancer566EliteeQTLschr9:76392996-76396189ENSR9_C9KN6, ENSR9_5MZ66Q, ENSR9_935BNW, ENSR9_935BP3, RFK_1
MLLT1MTA2IKZF1RELBTBPMXI1GABPAETV4JUNBEEDELK1SIN3AIKZF2CREMU2AF1BCL3BCL11ARBFOX2L3MBTL2ETS1EZH2PAX5MEF2AEP400RUNX3IRF4POLR2APOU2F2BATFPOLR2GZSCAN29CLOCKNFICSRFZNF263ZFXMEF2BMYCSMARCA4RAD51KDM4APHF8HDAC6HNF4GMNTSAP30BCORBHLHE40TCF12ZNF24ZBTB5HDAC1RBM39RLFMGATRIM24ZEB2USF2MAXRBBP5HNF4AEBF1CREB3L1ATF3MITFNCOA6SKILSREBF2SREBF1AGO2NFXL1ATF7USF1GATAD2BCHD1CTCFMTA3RFX5RNF2ZEB1ZNF316PRPF4RCOR1HNRNPLLESRRADPF2HNRNPKGMEB1ZNF217KDM1AEGR1STAT1ZBTB7ACTBP1TRIM22TFAP4UBTFRESTSMARCA5NCOR1CREB1ASH2LZNF687BACH1RAD21ARID1BTBPZNF444EP300NRF1ZNF263TAF1JUNDFUSSMC3ZNF143HDAC2CREMTAF7GATA4FOXA1MYCZNF407HNF4GSKISP1RB1RXRADEAF1ZBTB33NR3C1POU2F2KDM5AYY1KDM5BBCL3IRF1HCFC1MEF2CELF1SPI1USF1SIX5SAP30PMLE2F1E2F6RELBTCF12ELF4ZNF24PHF8ETS1GABPB1CHD1ZNF384RFX1NCOA1L3MBTL2ZNF282BCL11AE4F1BMI1IKZF1ZBTB40DPF2HDAC2LEF1NFRKBATF7RUNX3WRNIP1CREB1ATF3MAXRFX5L3MBTL2CREMESRRAPKNOX1ZFXMEIS2JUNDSP1HMBOX1NR2F2RAD21EP300ZBTB7AFOXK2CEBPBCUX1MGAFOXA1FOXA2HNF4AE2F6BHLHE40HNF4GGATA1GABPAELF1RXRAZBTB33SMARCA5EZH2IKZF1HNRNPKSPI1IRF1
GCNT1GH09J076414-9:76415361:C:T0.7611Enhancer99-eQTLs,Distancechr9:76414177-76416436ENSR9_935BWR, ENSR9_848MT6
TRIM28CBFBYY1GABPAGATA2SPI1CREMRUNX3FOSFOSFOSL2FOXA2MNTGABPAFOXA1SP1JUNDMAXHNF4ASTAT3USF1ZFX
GCNT1GH09J076422-9:76424050:T:C0.7307Enhancer209-eQTLs,Distancechr9:76422926-76424467-
CEBPBEP300NFE2L2CHD4KDM1AHDAC1ASH2LNCOR1SKIEHMT2HDAC2FOXP1FOXA1TBX3FOXA2EP300GATA3GATA4TCF7CREMRXRACUX1JUNDNR2F6SOX13HNF4GRFX1CTBP1HNF4AARID3ACEBPBSP1
GCNT1GH09J076431-None0.0000Enhancer36-Distancechr9:76431724-76431874ENSR9_848N7C
EP300NANOG
GCNT1GH09J076441-9:76441087:G:A0.3848Enhancer179-Distancechr9:76441080-76442685ENSR9_848NF3, ENSR9_BK6LB
MTA3NFATC3STAT5ANFATC1BMI1ZNF217GATAD2BZBED1IKZF1ARID3AGABPACHD1MEF2BSTAT3ATF2MTA2TBL1XR1TRIM22IKZF2CREMTBX21EP300MEF2CETV6ARNTATF3IRF4TCF12FOSDPF2RELBMEF2AJUNDBHLHE40BACH1EEDESR1NFICRUNX3PAX5JUNBBCL11AEBF1TCF7BATFATF7SKILGATA2BATFJUNDESR1MAFKZNF316
GCNT1GH09J076444-9:76444511:A:G1.0541Enhancer99-eQTLs,Distancechr9:76444115-76444912-
FOXA1GATA3CTBP1ESRRACREB1
GCNT1GH09J076447-9:76447502:C:T0.4891Enhancer183EliteDistancechr9:76447401-76448217ENSR9_BK6M6
CTCFTRIM22FOXK2SMC3ZNF143FOXA1FOXA2RAD21ARID3AMAXREST
GCNT1GH09J076450-9:76451306:A:G0.3081Enhancer36-Distancechr9:76450860-76451920ENSR9_935CBC
FOSL2FOSCEBPB
GCNT1GH09J076453-9:76454099:G:A0.1649Enhancer71-Distancechr9:76453645-76454343ENSR9_935CC4
CEBPBZNF384
GCNT1GH09J076455-9:76456056:GAGTT:G1.4971Enhancer302EliteDistancechr9:76455784-76457154ENSR9_BK6ND
HDAC1ASH2LTCF12TRIM28TAF9BNCOR1IKZF1MNTFOXK2SKIPOLR2AMLLT1SMARCC2ZNF318CTBP1ZEB2FOXA2CREMDACH1FOXA1ARID1BMAXCBFA2T3TFAP4E4F1ARNTFOXM1FOXP1EGR1ELF1ARID3AHDAC3LEF1GABPB1PMLDPF2SMARCA4NCOA2ETV4HDAC2TAL1NCOA1GATA1CBFA2T2SP1RUNX1TBX3SOX13RCOR1KDM1ABCORGATA2TCF7STAT5ATBL1XR1NRF1RXRANR2F6JUNDRNF2EP300ATF3HNF4ATRIM24BHLHE40NFICZNF282NEUROD1HES1FOSL2SMARCE1NR2F1MEIS2TEAD4GATA4MTA2GABPACTCFSPI1SOX6KLF16NR2F2
GCNT1GH09J076458-9:76461883:C:T1.1091Promoter/Enhancer540EliteeQTLs,Distancechr9:76458544-76462670ENSR9_BK6NQ, ENSR9_5MZK94, ENSR9_C9KSX, ENSR9_5MZKB8, GCNT1_1
CTCFE2F1MAXATF2SMC3MGAPOLR2AZNF143NRF1RAD21RNF2TBPL3MBTL2SPI1EGR1CREMCREB1JUNDZNF263CBFA2T3TFAP4MYCTAF15ZEB1SP1E2F6MNTRB1EP300CTBP1RUNX3IRF1BACH1SIN3ATCF12FOSL1PHF8KDM5BGABPATAF1TBL1XR1POU2F2PAX5YY1ZNF579ZNF444EZH2KDM4AZBTB40FOSASH2LCHD1CEBPBGABPAPOLR2AHNRNPLLMYCCTCFZNF263L3MBTL2PKNOX1TRIM22STAT3CEBPBRAD21NFICATF2MEF2ABATFRUNX3
GCNT1GH09J076470-9:76474194:G:A0.8082Enhancer260EliteeQTLs,Distancechr9:76470802-76474200ENSR9_935CJ2, ENSR9_BK6QP, ENSR9_76HF6K
USF1SP1EP300TCF12KDM1APKNOX1ESR1CHD4RB1TBX21KLF5DPF2TRIM22ZNF207GATAD2BRELBZBED1IKZF1RAD51CBX5PKNOX1ZNF217NFATC3MEF2BETV6MTA2ELF1GABPARCOR1IKZF2SRFNFICARID3ARUNX3MLLT1ATF7TBL1XR1TCF7EP300PAX5BHLHE40TCF12SPI1ATF2BCL3EEDSKILRESTMEF2CPOU2F2CBFBPOLR2ANBNEBF1CREMMTA3JUNDBMI1BCL11AIRF4ARNTJUNBBACH1NFATC1PAX8PBX3STAT5ABATFMEF2AEZH2POLR2APKNOX1ESR1MAFK
GCNT1GH09J076475-9:76475877:GTAAC:G0.7784Enhancer1-Distancechr9:76475472-76476357-
SPI1
GCNT1GH09J076489-9:76490934:T:C0.7892Enhancer98EliteeQTLs,Distancechr9:76489773-76491267-
C11orf30ZNF316ZNF217SMARCE1ZNF24NR2F2SPI1CTCFSPI1
GCNT1GH09J076491-9:76491509:GT:G0.1023Enhancer1-Distancechr9:76491400-76491600-
CTCFSPI1
GCNT1GH09J076512-9:76512909:T:C0.1239Enhancer36--chr9:76512301-76513020ENSR9_848PXD
FOS
GCNT1GH09J076520-9:76521327:C:T0.4209Enhancer153Elite-chr9:76520838-76522204ENSR9_935D3M
NR3C1ESR1GATA3FOSPOLR2ANR3C1ATF3SREBF1FOSESR1
GCNT1GH09J076524-9:76525685:T:G1.1596Enhancer82-eQTLschr9:76524992-76527665-
POLR2AGATA3FOSFOXA1
GCNT1GH09J076529-9:76529902:G:A1.0021Enhancer1-eQTLschr9:76529420-76530056-
SPI1
GCNT1GH09J076530-9:76530872:G:A0.8756Enhancer63EliteeQTLschr9:76530401-76531199ENSR9_935D6C
POLR2A
GCNT1GH09J076531-None0.0000Enhancer133Elite-chr9:76531444-76531634-
POLR2AZNF217DPF2SMARCE1
GCNT1GH09J076533-9:76533675:G:A0.0161Enhancer98Elite-chr9:76533550-76534625ENSR9_935D7C
SPI1GATA3
GCNT1GH09J076536-None0.0000Enhancer1--chr9:76536080-76536607--
GCNT1GH09J076537-None0.0000Enhancer63Elite-chr9:76537131-76537537-
POLR2ANR3C1EP300
GCNT1GH09J076544-9:76545077:G:T0.3450Enhancer105--chr9:76544699-76545459-
ZNF217RXRAPKNOX1RFX5FOXA2FOXA1
GCNT1GH09J076553-9:76553109:A:G0.5999Enhancer98Elite-chr9:76553000-76553465-
NFYBSP1
GCNT1GH09J076557-9:76557835:G:T0.0526Enhancer118Elite-chr9:76557784-76557954ENSR9_935DG6
ATF2STAT3FOSPKNOX1
GCNT1GH09J076558-None0.0000Enhancer63Elite-chr9:76558604-76558714--
GCNT1GH09J076560-9:76560576:G:A0.2287Enhancer125Elite-chr9:76560014-76561040ENSR9_BK78H
FOS
GCNT1GH09J076561-9:76562376:G:A0.3287Enhancer194Elite-chr9:76561472-76563754ENSR9_BK78R
ZMYM3RBM25BHLHE40NFATC1MAFKCBX5GATA1FOSEP300SPI1STAT3CEBPBRFX1
GCNT1GH09J076564-None0.0000Enhancer98Elite-chr9:76564464-76564514-
FOSGATA2
GCNT1GH09J076570-9:76571002:A:C0.5313Enhancer63Elite-chr9:76570944-76571094--
GCNT1GH09J076572-None0.0000Enhancer118Elite-chr9:76571183-76571212-
EED
GCNT1GH09J076571-9:76572019:C:T0.2524Enhancer161Elite-chr9:76571364-76572434ENSR9_935DL5, ENSR9_848R7H
EEDGATA1POLR2ARNF2SPI1PAX5RUNX3CBX8SMARCA4RNF2STAT3FOSBMI1CBX8
GCNT1GH09J076574-9:76574768:C:T0.1987Enhancer219Elite-chr9:76574035-76575052-
CTCFSPI1MEIS2MAFFNFE2MAFKC11orf30ZNF316
GCNT1GH09J076575-9:76575931:G:A0.1537Enhancer345Elite-chr9:76575601-76577799ENSR9_935DMK, ENSR9_BK7BX
POLR2ANFICATF2PAX5MEF2AYY1POU2F2SPI1BCL11ANFATC1BATFFOSEP300RUNX3FOSRUNX3L3MBTL2
GCNT1GH09J076577-None0.0000Enhancer133Elite-chr9:76577844-76577994ENSR9_BK7BX
L3MBTL2RUNX3
GCNT1GH09J076579-9:76579832:C:A0.1703Enhancer36--chr9:76579727-76581204ENSR9_848RDB
SPI1
GCNT1GH09J076581-9:76582125:G:A0.1107Enhancer63Elite-chr9:76581488-76582466-
CTCF
GCNT1GH09J076584-9:76585209:G:A0.4781Enhancer180Elite-chr9:76584930-76588834-
SPI1EP300ELK1POLR2AFOXA2CBFA2T3CTCFFOXA1SPI1
GCNT1GH09J076591-9:76591828:C:T0.2955Enhancer276Elite-chr9:76591213-76593651ENSR9_848RLW, ENSR9_BK7F4
CEBPBKDM4ARBBP5KDM1ACHD7CEBPBUSF1EP300MAFK
GCNT1GH09J076594-9:76595348:C:A0.6453Enhancer215Elite-chr9:76594844-76596600ENSR9_848RP8
CHD7KDM1AASH2LSP1NANOGRBBP5CTCFEP300FOS
GCNT1GH09J076599-9:76600321:T:C0.5485Enhancer63Elite-chr9:76599909-76600643-
USF1
GCNT1GH09J076603-None0.0000Enhancer98Elite-chr9:76603444-76603614ENSR9_BK7GP-
GCNT1GH09J076604-None0.0000Enhancer98Elite-chr9:76603744-76603889ENSR9_BK7GP
CEBPBFOS
GCNT1GH09J076607-9:76621358:G:A1.1475Enhancer290EliteeQTLschr9:76607816-76621843ENSR9_BK7HM, ENSR9_935F3R, ENSR9_935F4S, ENSR9_848S86
MAFKMAFFPOLR2AEP400ATF7ATF4ATF3MAXEP300RAD21L3MBTL2MYCFOSMGACEBPBJUNDSMARCA4E2F6RNF2GATA1SP1SPI1FOXA1CEBPBMITFEP300ATF7ATF2JUNDCEBPBGATA1POLR2A
GCNT1GH09J076622-9:76623916:T:A1.1476Enhancer98EliteeQTLschr9:76622544-76625133-
RUNX3
GCNT1GH09J076628-9:76630416:G:C1.5213Enhancer56--chr9:76628952-76630626ENSR9_848SFW
RUNX3
GCNT1GH09J076630-9:76630792:C:T1.6193Enhancer162--chr9:76630766-76631791-
RNF2PMLDPF2HDAC1SMARCC2MYCTRIM28HDAC3SMARCE1NCOA1SOX6NR2F6NFICKDM1AARID1BTCF12GATA1CBFA2T3FOXM1NR2F2STAT5ANEUROD1LEF1KLF16TBL1XR1EGR1CREMTAL1GATA2NCOR1SMARCA4CBFA2T2TEAD4HDAC2IKZF1EP300MTA2MEIS2
GCNT1GH09J076634-None0.0000Enhancer99--chr9:76634444-76634714ENSR9_935F9C
ELK1RFX5SREBF1SRFCEBPBMAFKGATA3CUX1FOXA2
GCNT1GH09J076637-9:76637727:C:T0.5951Enhancer1--chr9:76637624-76637774-
FOS
GCNT1GH09J076642-9:76642905:G:C0.7450Enhancer63Elite-chr9:76642800-76643000-
POLR2AZNF444
GCNT1GH09J076643-9:76644053:A:C0.2101Enhancer206Elite-chr9:76643372-76644399ENSR9_BK7NH
SIN3APOLR2ATAF1PAX5BCL11AIRF4TCF12SPI1CBX5BATF
GCNT1GH09J076650-9:76651442:G:T0.8354Promoter/Enhancer400Elite-chr9:76650388-76657343ENSR9_935FG4, ENSR9_935FG8, ENSR9_848SXF, ENSR9_C9LD3
MAFKMAFFC11orf30IRF1HMBOX1ELF4SPI1CTCFUSF2BHLHE40FOSEP300JUNDMAFKSTAT3CEBPBGATA1POLR2AGATA2TBX21CTCFJUNDSIN3A
GCNT1GH09J076687-9:76689127:T:G1.0556Enhancer376EliteeRNA_co-expressionchr9:76687043-76689264ENSR9_BK7WX
RBM25POLR2AGATA2ATF3FOSJUNDCREB1CEBPBRFX1STAT3KDM1AEHMT2SKINCOR1ETV4RXRASP1HNF4ATBL1XR1ARID3AEP300SOX13STAT3BHLHE40TCF7ATMFOXA1HNF4GCEBPBSMC3FOSNR2F6