GWAS Annotated Elements: GCNT1

Gene: glucosaminyl (N-acetyl) transferase 1

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH09J076372 - 9:76373083:A:G 0.7996 Enhancer Elite eQTLs chr9:76372586-76376124
SIN3AHDAC1ASH2LZHX2YY1HNF4AEHMT2RESTGABPASP1RXRASIN3APOLR2AZBTB33XRCC5CREMCTCFETV4FOXA2ATF3EGR1CCAR2ATF7KDM1ALCORLNCOR1NR3C1MAXRAD21HDAC2TBL1XR1EP300ARID3AETS1CBFA2T3SKIESRRAHNF4GTCF7JUNDTCF12CEBPBFOXA1CBFA2T2SMC3RFX5USF1NR2F6TBPFOSL2NR2F2TFAP4MAFKBATFFOXA1FOXA2L3MBTL2CHD4MAXTAF1ATF7ZHX2KDM1AZNF263GABPACTBP1CREB1NFIBNR2F6MNTRESTHDAC1BCL3ARID1BE2F1JUNDZBTB33POLR2AIKZF1TBX3SKINCOR1NR2F2RAD21ATF3RXRAZNF217ETS1EGR1FOXA1FOXA2TCF12RFX5SP1GATA2SIN3ADPF2FOXK2RCOR1SPI1NBNEP300ELF1MAFFSMARCE1NR3C1ATF2CEBPBFOSHNF4ANR2F1FOSL2BHLHE40NFE2L2CREMMEIS2
GH09J076378 - 9:76380142:T:A 0.8210 Enhancer - eQTLs chr9:76378143-76380444
CTCFRESTATF7ATF2ATF4ATF3CEBPBGATA3RFX1SP1SIN3AFOSL2CTCFPKNOX1JUNDSTAT3RCOR1MYCELF1CREB1NEUROD1NCOA3FOSGATAD2BATF7SMARCE1FOXA1MNTTCF12MTA1ESRRADPF2CTBP1ZNF217SPI1MAFKZBTB33
GH09J076392 - 9:76393368:A:G 0.7781 Promoter/Enhancer Elite eQTLs chr9:76392996-76396189
MLLT1MTA2IKZF1RELBTBPMXI1GABPAETV4JUNBEEDELK1SIN3AIKZF2CREMU2AF1BCL3BCL11ARBFOX2L3MBTL2ETS1EZH2PAX5MEF2AEP400RUNX3IRF4POLR2APOU2F2BATFPOLR2GZSCAN29CLOCKNFICSRFZNF263ZFXMEF2BMYCSMARCA4RAD51KDM4APHF8HDAC6HNF4GMNTSAP30BCORBHLHE40TCF12ZNF24ZBTB5HDAC1RBM39RLFMGATRIM24ZEB2USF2MAXRBBP5HNF4AEBF1CREB3L1ATF3MITFNCOA6SKILSREBF2SREBF1AGO2NFXL1ATF7USF1GATAD2BCHD1CTCFMTA3RFX5RNF2ZEB1ZNF316PRPF4RCOR1HNRNPLLESRRADPF2HNRNPKGMEB1ZNF217KDM1AEGR1STAT1ZBTB7ACTBP1TRIM22TFAP4UBTFRESTSMARCA5NCOR1CREB1ASH2LZNF687BACH1RAD21ARID1BTBPZNF444EP300NRF1ZNF263TAF1JUNDFUSSMC3ZNF143HDAC2CREMTAF7GATA4FOXA1MYCZNF407HNF4GSKISP1RB1RXRADEAF1ZBTB33NR3C1POU2F2KDM5AYY1KDM5BBCL3IRF1HCFC1MEF2CELF1SPI1USF1SIX5SAP30PMLE2F1E2F6RELBTCF12ELF4ZNF24PHF8ETS1GABPB1CHD1ZNF384RFX1NCOA1L3MBTL2ZNF282BCL11AE4F1BMI1IKZF1ZBTB40DPF2HDAC2LEF1NFRKBATF7RUNX3WRNIP1CREB1ATF3MAXRFX5L3MBTL2CREMESRRAPKNOX1ZFXMEIS2JUNDSP1HMBOX1NR2F2RAD21EP300ZBTB7AFOXK2CEBPBCUX1MGAFOXA1FOXA2HNF4AE2F6BHLHE40HNF4GGATA1GABPAELF1RXRAZBTB33SMARCA5EZH2IKZF1HNRNPKSPI1IRF1
GH09J076414 - 9:76415361:C:T 0.7611 Enhancer - eQTLs,Distance chr9:76414177-76416436
TRIM28CBFBYY1GABPAGATA2SPI1CREMRUNX3FOSFOSFOSL2FOXA2MNTGABPAFOXA1SP1JUNDMAXHNF4ASTAT3USF1ZFX
GH09J076422 - 9:76424050:T:C 0.7307 Enhancer - eQTLs,Distance chr9:76422926-76424467
CEBPBEP300NFE2L2CHD4KDM1AHDAC1ASH2LNCOR1SKIEHMT2HDAC2FOXP1FOXA1TBX3FOXA2EP300GATA3GATA4TCF7CREMRXRACUX1JUNDNR2F6SOX13HNF4GRFX1CTBP1HNF4AARID3ACEBPBSP1
GH09J076431 - None 0.0000 Enhancer - Distance chr9:76431724-76431874
EP300NANOG
GH09J076441 - 9:76441087:G:A 0.3848 Enhancer - Distance chr9:76441080-76442685
MTA3NFATC3STAT5ANFATC1BMI1ZNF217GATAD2BZBED1IKZF1ARID3AGABPACHD1MEF2BSTAT3ATF2MTA2TBL1XR1TRIM22IKZF2CREMTBX21EP300MEF2CETV6ARNTATF3IRF4TCF12FOSDPF2RELBMEF2AJUNDBHLHE40BACH1EEDESR1NFICRUNX3PAX5JUNBBCL11AEBF1TCF7BATFATF7SKILGATA2BATFJUNDESR1MAFKZNF316
GH09J076444 - 9:76444511:A:G 1.0541 Enhancer - eQTLs,Distance chr9:76444115-76444912
FOXA1GATA3CTBP1ESRRACREB1
GH09J076447 - 9:76447502:C:T 0.4891 Enhancer Elite Distance chr9:76447401-76448217
CTCFTRIM22FOXK2SMC3ZNF143FOXA1FOXA2RAD21ARID3AMAXREST
GH09J076450 - 9:76451306:A:G 0.3081 Enhancer - Distance chr9:76450860-76451920
FOSL2FOSCEBPB
GH09J076453 - 9:76454099:G:A 0.1649 Enhancer - Distance chr9:76453645-76454343
CEBPBZNF384
GH09J076455 - 9:76456056:GAGTT:G 1.4971 Enhancer Elite Distance chr9:76455784-76457154
HDAC1ASH2LTCF12TRIM28TAF9BNCOR1IKZF1MNTFOXK2SKIPOLR2AMLLT1SMARCC2ZNF318CTBP1ZEB2FOXA2CREMDACH1FOXA1ARID1BMAXCBFA2T3TFAP4E4F1ARNTFOXM1FOXP1EGR1ELF1ARID3AHDAC3LEF1GABPB1PMLDPF2SMARCA4NCOA2ETV4HDAC2TAL1NCOA1GATA1CBFA2T2SP1RUNX1TBX3SOX13RCOR1KDM1ABCORGATA2TCF7STAT5ATBL1XR1NRF1RXRANR2F6JUNDRNF2EP300ATF3HNF4ATRIM24BHLHE40NFICZNF282NEUROD1HES1FOSL2SMARCE1NR2F1MEIS2TEAD4GATA4MTA2GABPACTCFSPI1SOX6KLF16NR2F2
GH09J076458 - 9:76461883:C:T 1.1091 Promoter/Enhancer Elite eQTLs,Distance chr9:76458544-76462670
CTCFE2F1MAXATF2SMC3MGAPOLR2AZNF143NRF1RAD21RNF2TBPL3MBTL2SPI1EGR1CREMCREB1JUNDZNF263CBFA2T3TFAP4MYCTAF15ZEB1SP1E2F6MNTRB1EP300CTBP1RUNX3IRF1BACH1SIN3ATCF12FOSL1PHF8KDM5BGABPATAF1TBL1XR1POU2F2PAX5YY1ZNF579ZNF444EZH2KDM4AZBTB40FOSASH2LCHD1CEBPBGABPAPOLR2AHNRNPLLMYCCTCFZNF263L3MBTL2PKNOX1TRIM22STAT3CEBPBRAD21NFICATF2MEF2ABATFRUNX3
GH09J076470 - 9:76474194:G:A 0.8082 Enhancer Elite eQTLs,Distance chr9:76470802-76474200
USF1SP1EP300TCF12KDM1APKNOX1ESR1CHD4RB1TBX21KLF5DPF2TRIM22ZNF207GATAD2BRELBZBED1IKZF1RAD51CBX5PKNOX1ZNF217NFATC3MEF2BETV6MTA2ELF1GABPARCOR1IKZF2SRFNFICARID3ARUNX3MLLT1ATF7TBL1XR1TCF7EP300PAX5BHLHE40TCF12SPI1ATF2BCL3EEDSKILRESTMEF2CPOU2F2CBFBPOLR2ANBNEBF1CREMMTA3JUNDBMI1BCL11AIRF4ARNTJUNBBACH1NFATC1PAX8PBX3STAT5ABATFMEF2AEZH2POLR2APKNOX1ESR1MAFK
GH09J076475 - 9:76475877:GTAAC:G 0.7784 Enhancer - Distance chr9:76475472-76476357
SPI1
GH09J076489 - 9:76490934:T:C 0.7892 Enhancer Elite eQTLs,Distance chr9:76489773-76491267
C11orf30ZNF316ZNF217SMARCE1ZNF24NR2F2SPI1CTCFSPI1
GH09J076491 - 9:76491509:GT:G 0.1023 Enhancer - Distance chr9:76491400-76491600
CTCFSPI1
GH09J076512 - 9:76512909:T:C 0.1239 Enhancer - - chr9:76512301-76513020
FOS
GH09J076520 - 9:76521327:C:T 0.4209 Enhancer Elite - chr9:76520838-76522204
NR3C1ESR1GATA3FOSPOLR2ANR3C1ATF3SREBF1FOSESR1
GH09J076524 - 9:76525685:T:G 1.1596 Enhancer - eQTLs chr9:76524992-76527665
POLR2AGATA3FOSFOXA1
GH09J076529 - 9:76529902:G:A 1.0021 Enhancer - eQTLs chr9:76529420-76530056
SPI1
GH09J076530 - 9:76530872:G:A 0.8756 Enhancer Elite eQTLs chr9:76530401-76531199
POLR2A
GH09J076531 - None 0.0000 Enhancer Elite - chr9:76531444-76531634
POLR2AZNF217DPF2SMARCE1
GH09J076533 - 9:76533675:G:A 0.0161 Enhancer Elite - chr9:76533550-76534625
SPI1GATA3
GH09J076536 - None 0.0000 Enhancer - - chr9:76536080-76536607 -
GH09J076537 - None 0.0000 Enhancer Elite - chr9:76537131-76537537
POLR2ANR3C1EP300
GH09J076544 - 9:76545077:G:T 0.3450 Enhancer - - chr9:76544699-76545459
ZNF217RXRAPKNOX1RFX5FOXA2FOXA1
GH09J076553 - 9:76553109:A:G 0.5999 Enhancer Elite - chr9:76553000-76553465
NFYBSP1
GH09J076557 - 9:76557835:G:T 0.0526 Enhancer Elite - chr9:76557784-76557954
ATF2STAT3FOSPKNOX1
GH09J076558 - None 0.0000 Enhancer Elite - chr9:76558604-76558714 -
GH09J076560 - 9:76560576:G:A 0.2287 Enhancer Elite - chr9:76560014-76561040
FOS
GH09J076561 - 9:76562376:G:A 0.3287 Enhancer Elite - chr9:76561472-76563754
ZMYM3RBM25BHLHE40NFATC1MAFKCBX5GATA1FOSEP300SPI1STAT3CEBPBRFX1
GH09J076564 - None 0.0000 Enhancer Elite - chr9:76564464-76564514
FOSGATA2
GH09J076570 - 9:76571002:A:C 0.5313 Enhancer Elite - chr9:76570944-76571094 -
GH09J076572 - None 0.0000 Enhancer Elite - chr9:76571183-76571212
EED
GH09J076571 - 9:76572019:C:T 0.2524 Enhancer Elite - chr9:76571364-76572434
EEDGATA1POLR2ARNF2SPI1PAX5RUNX3CBX8SMARCA4RNF2STAT3FOSBMI1CBX8
GH09J076574 - 9:76574768:C:T 0.1987 Enhancer Elite - chr9:76574035-76575052
CTCFSPI1MEIS2MAFFNFE2MAFKC11orf30ZNF316
GH09J076575 - 9:76575931:G:A 0.1537 Enhancer Elite - chr9:76575601-76577799
POLR2ANFICATF2PAX5MEF2AYY1POU2F2SPI1BCL11ANFATC1BATFFOSEP300RUNX3FOSRUNX3L3MBTL2
GH09J076577 - None 0.0000 Enhancer Elite - chr9:76577844-76577994
L3MBTL2RUNX3
GH09J076579 - 9:76579832:C:A 0.1703 Enhancer - - chr9:76579727-76581204
SPI1
GH09J076581 - 9:76582125:G:A 0.1107 Enhancer Elite - chr9:76581488-76582466
CTCF
GH09J076584 - 9:76585209:G:A 0.4781 Enhancer Elite - chr9:76584930-76588834
SPI1EP300ELK1POLR2AFOXA2CBFA2T3CTCFFOXA1SPI1
GH09J076591 - 9:76591828:C:T 0.2955 Enhancer Elite - chr9:76591213-76593651
CEBPBKDM4ARBBP5KDM1ACHD7CEBPBUSF1EP300MAFK
GH09J076594 - 9:76595348:C:A 0.6453 Enhancer Elite - chr9:76594844-76596600
CHD7KDM1AASH2LSP1NANOGRBBP5CTCFEP300FOS
GH09J076599 - 9:76600321:T:C 0.5485 Enhancer Elite - chr9:76599909-76600643
USF1
GH09J076603 - None 0.0000 Enhancer Elite - chr9:76603444-76603614 -
GH09J076604 - None 0.0000 Enhancer Elite - chr9:76603744-76603889
CEBPBFOS
GH09J076607 - 9:76621358:G:A 1.1475 Enhancer Elite eQTLs chr9:76607816-76621843
MAFKMAFFPOLR2AEP400ATF7ATF4ATF3MAXEP300RAD21L3MBTL2MYCFOSMGACEBPBJUNDSMARCA4E2F6RNF2GATA1SP1SPI1FOXA1CEBPBMITFEP300ATF7ATF2JUNDCEBPBGATA1POLR2A
GH09J076622 - 9:76623916:T:A 1.1476 Enhancer Elite eQTLs chr9:76622544-76625133
RUNX3
GH09J076628 - 9:76630416:G:C 1.5213 Enhancer - - chr9:76628952-76630626
RUNX3
GH09J076630 - 9:76630792:C:T 1.6193 Enhancer - - chr9:76630766-76631791
RNF2PMLDPF2HDAC1SMARCC2MYCTRIM28HDAC3SMARCE1NCOA1SOX6NR2F6NFICKDM1AARID1BTCF12GATA1CBFA2T3FOXM1NR2F2STAT5ANEUROD1LEF1KLF16TBL1XR1EGR1CREMTAL1GATA2NCOR1SMARCA4CBFA2T2TEAD4HDAC2IKZF1EP300MTA2MEIS2
GH09J076634 - None 0.0000 Enhancer - - chr9:76634444-76634714
ELK1RFX5SREBF1SRFCEBPBMAFKGATA3CUX1FOXA2
GH09J076637 - 9:76637727:C:T 0.5951 Enhancer - - chr9:76637624-76637774
FOS
GH09J076642 - 9:76642905:G:C 0.7450 Enhancer Elite - chr9:76642800-76643000
POLR2AZNF444
GH09J076643 - 9:76644053:A:C 0.2101 Enhancer Elite - chr9:76643372-76644399
SIN3APOLR2ATAF1PAX5BCL11AIRF4TCF12SPI1CBX5BATF
GH09J076650 - 9:76651442:G:T 0.8354 Promoter/Enhancer Elite - chr9:76650388-76657343
MAFKMAFFC11orf30IRF1HMBOX1ELF4SPI1CTCFUSF2BHLHE40FOSEP300JUNDMAFKSTAT3CEBPBGATA1POLR2AGATA2TBX21CTCFJUNDSIN3A
GH09J076687 - 9:76689127:T:G 1.0556 Enhancer Elite eRNA_co-expression chr9:76687043-76689264
RBM25POLR2AGATA2ATF3FOSJUNDCREB1CEBPBRFX1STAT3KDM1AEHMT2SKINCOR1ETV4RXRASP1HNF4ATBL1XR1ARID3AEP300SOX13STAT3BHLHE40TCF7ATMFOXA1HNF4GCEBPBSMC3FOSNR2F6