GWAS Annotated: GRIA1

Gene: glutamate ionotropic receptor AMPA type subunit 1

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
GRIA1GH05J153350-5:153350848:G:C0.8587Enhancer6-eRNA_co-expressionchr5:153350830-153351068--
GRIA1GH05J153463-5:153463587:G:A0.0722Enhancer36-C-HiC,Distancechr5:153463575-153464737ENSR5_948WM4
HNF4AFOSCEBPBMAFK
GRIA1GH05J153490-None0.0000Promoter/Enhancer298EliteDistancechr5:153490200-153490800ENSR5_948WWQ, ENSR5_53C4QM4, ENSR5_86HSSN, GRIA1_1
CTCFRAD21SMC3MXI1ASH2LEP300USF1RBBP5TBPSIN3AKDM4ACHD1
GRIA1GH05J153512-5:153513873:C:T1.1685Enhancer1-eQTLs,C-HiC,Distancechr5:153512927-153514256ENSR5_948X6D-
GRIA1GH05J153516-5:153517847:G:C0.0901Enhancer1-C-HiC,Distancechr5:153516940-153517982ENSR5_948X7J
SMARCA4
GRIA1GH05J153521-5:153521126:G:T0.8631Enhancer36-eQTLs,C-HiC,Distancechr5:153521080-153521230ENSR5_948X8M
JUND
GRIA1GH05J153522-5:153524457:C:CT0.3659Enhancer82-C-HiC,Distancechr5:153522475-153524550ENSR5_948X99, ENSR5_948X9G
NR2F2RXRACEBPBNFICLCORLNFIB
GRIA1GH05J153551-5:153552390:T:C0.3844Enhancer199EliteDistancechr5:153551039-153553114ENSR5_B35GR8
USF1RAD21EP300ASH2LFOXA1SP1SMC3POLR2AMXI1CHD1NFE2L2STAT3C11orf30MAFKFOSATF3MITFJUNDBHLHE40FOSL2MYCBACH1USF2JUNUSF1TAF1
GRIA1GH05J153562-5:153562663:T:C0.1247Enhancer56-eQTLs,Distancechr5:153562034-153562793ENSR5_948XNK
ZFXFOSJUND
GRIA1GH05J153583-5:153584160:A:G1.6524Enhancer1-Distancechr5:153583764-153584870--
GRIA1GH05J153618-5:153618849:T:C1.5551Enhancer195EliteeQTLs,Distancechr5:153618783-153620500ENSR5_948Z9Z, ENSR5_948ZB7
GATA1SMARCA4ATF7GATA2NR2F6CREB1JUNDTAL1ATF3ATF2EP300JUNCREMNFE2ARID1BFOSDPF2NR2F1ESRRAGATA2ESRRAJUNDFOSEP300
GRIA1GH05J153627-5:153629748:G:A2.4236Enhancer278EliteeQTLs,Distancechr5:153627361-153630622ENSR5_B35H7G, ENSR5_53C5MGR
NR2F2GATA2MAXMXI1SIN3AFOSJUNDCTCFRXRAEP300MAFKRAD21NFE2L2NR3C1TAF1RESTEGR1STAT3USF2SMC3BHLHE40MYCNR3C1EP300CBFA2T3
GRIA1GH05J153659-None0.0000Enhancer56-Distancechr5:153659097-153659570ENSR5_948ZPN
JUNDRAD21FOS
GRIA1GH05J153742-None0.0000Enhancer200-Distancechr5:153742160-153742310-
MNTARID1BDPF2RLFHDAC1HDAC2CBFA2T3TAL1E4F1PMLTCF12SMARCA4IKZF1NBNGMEB1NFATC3KDM1ACC2D1AMTA1ARNTRNF2ZSCAN29BRD9NCOA1SMARCC2MYCBCORCHAMP1FOXM1PHB2NCOR1LEF1ZNF639SMARCE1NR2F2EGR1POLR2ANFRKBFOXK2RFX1NEUROD1MLLT1TRIM28CBFA2T2STAT5AEHMT2ZEB2ZBTB2MTA3MEIS2TBL1XR1MTA2GATAD2AZBTB5EP300HMBOX1TEAD4SMARCB1TRIM24JUNPKNOX1ATF3BHLHE40RAD51JUNDCTBP1MITFNFICHES1SOX6FOSL1ZNF24NR2C1
GRIA1GH05J153748-5:153748934:T:C0.8564Enhancer99-eRNA_co-expression,Distancechr5:153748815-153748947-
NCOR1TCF12CBFA2T3HDAC2TAL1ARID1B
GRIA1GH05J153782-5:153782613:C:G3.6246Enhancer71-Distancechr5:153782240-153783430ENSR5_94933C, ENSR5_53C6LR3
RBM25MEIS2CBFA2T3CTCFRAD21JUNDJUNSMC3RCOR1EP300RAD21CTCF