GWAS Annotated: GRIK1

Gene: glutamate ionotropic receptor kainate type subunit 1

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
GRIK1GH21J029089-21:29092135:G:C1.1712Enhancer327EliteeQTLschr21:29089801-29093369ENSR21_9FJQB, ENSR21_58SQ2Q, ENSR21_58SQ2Z, ENSR21_9FJQL
IKZF1HDAC1MTA1ZBTB2NFATC3RNF2MLLT1NFXL1ARHGAP35PHB2TRIM24ZNF24GATAD2BCTCFNCOA4HNRNPKPCBP2ZFP91SMC3RAD21TRIM22E2F1HNF4AZNF592ZNF143SRFSKIRESTMEF2ARXRAARID3AZNF384RAD21FOXA2JUNBCEBPBFOSSTAT3FOXA1JUNDBHLHE40SMC3HNF4AYY1KDM1ANR2F2JUNDARID3ASP1ZBTB33MAXFOXA2RXRAGABPAATF3RAD21RESTHNF4GTAF1CTCFDPF2GATA2SMARCA4SMC3ZNF384
GRIK1GH21J029552-21:29552693:AGAAAT:A0.3074Enhancer6-eRNA_co-expression,Distancechr21:29552656-29552980--
GRIK1GH21J029555-None0.0000Enhancer103-Distancechr21:29555595-29555823-
ZNF316POLR2APMLNR2F2SMAD5TAF7FOXK2
GRIK1GH21J029557-None0.0000Enhancer82-Distancechr21:29557400-29557600-
IKZF1JUNBIRF4SPI1BATF
GRIK1GH21J029564-None0.0000Enhancer1-Distancechr21:29564618-29565209ENSR21_9FPSL-
GRIK1GH21J029580-None0.0000Enhancer111-Distancechr21:29580757-29582345-
RFX1BMI1C11orf30MAFFMAFKZNF316MAFKMAFF
GRIK1GH21J029595-21:29595188:C:A0.0387Enhancer14-eRNA_co-expression,Distancechr21:29595061-29595366--
GRIK1GH21J029614-None0.0000Enhancer91-Distancechr21:29613140-29613290ENSR21_8THP9
CEBPBSMARCE1SMARCA4EHMT2NR2F6CUX1JUNDCBX5
GRIK1GH21J029613-21:29614106:G:A0.6687Enhancer126-Distancechr21:29613960-29614110-
GATAD2BNCOR1HDAC2SMARCA4NR2F1NFICTCF12TAL1IKZF1TEAD4EP300NR2F6CBFA2T2ARID1BCBFA2T3NR2F2
GRIK1GH21J029634-21:29635026:C:T1.1172Enhancer117-Distancechr21:29634471-29635619-
CHAMP1RFX1NCOR1MEIS2ZNF592MYCZEB2SMARCA4HDAC2CBFA2T3PKNOX1MEIS2L3MBTL2
GRIK1GH21J029637-None0.0000Enhancer161EliteDistancechr21:29637795-29637964-
HMBOX1L3MBTL2MAXCHAMP1TCF12SMARCA4NFE2ZNF592ATF4ZNF316
GRIK1GH21J029639-21:29639452:G:A0.9819Enhancer380EliteDistancechr21:29639400-29641017ENSR21_9FQMF
IKZF2ZNF24CEBPBHMBOX1ZNF592IKZF1ARID1BNCOR1MYCTCF12TEAD4TAL1C11orf30ZNF316MAFKMNTZNF384BHLHE40MITFTRIM24ZBTB40SOX6L3MBTL2WHSC1GMEB1E4F1RFX1SMARCA5NFRKBBRD9ARID1BKDM1ARBM25TRIM24CC2D1ATAF9BMNTZNF143
GRIK1GH21J029641-21:29642615:C:T1.1046Enhancer299EliteDistancechr21:29641604-29642891-
TAF9BMNTMYBL2ZNF592MGAYY1NRF1NFRKBBCORZMYM3RFX1ZNF592ATF7DPF2CREB3L1ARID1BHDAC2UBTFRBFOX2ZNF24ZEB2E4F1NBNTCF12ZBTB2ZNF282HDAC1NFATC3MNTARNTCTBP1MYCHMBOX1GMEB1TAL1POLR2ANR2F1NR2F6FOXK2GATA1ZNF384ESRRASMARCA4TBPNCOR1TAF9BMTA3NR2C1CBX3MTA1E2F1MBD2NCOA2RESTCBX1CEBPBRNF2SMARCE1MTA2MITFPHB2RCOR1NCOA6TBL1XR1GABPAMYNNZNF830SMAD1HES1IKZF1YY1IRF1SOX6NFICZNF639STAT2RUNX1ATF3TRIM24TEAD4ZBTB11GATAD2BEP300PMLCTCFZKSCAN1JUNE2F6FOXM1EP400CHAMP1MYBL2BRD9NCOA1SMAD5MAFKHCFC1SMARCC2LEF1MLLT1MEIS2KDM1AUSF2MAXSTAT5ATRIM28L3MBTL2RAD51KLF16AFF1NR2F2GATA2CREMCUX1MGAPKNOX1BRD4BHLHE40NFE2JUNDCC2D1AHDAC3BCORNEUROD1ETV6NFRKBZBTB33YY1NEUROD1GATA2ARID1BMLLT1SMARCA4SMARCE1ZEB2NCOR1
GRIK1GH21J029647-21:29647609:T:G0.4393Enhancer375EliteDistancechr21:29647352-29647690ENSR21_9FQPK
BRD4POLR2ANFRKBZNF592MNTL3MBTL2HMBOX1KDM1AEP400PYGO2ZNF24NRF1HNRNPLLATF7ARNTZSCAN29GMEB1ESRRANR2F1ATF2CTBP1NFATC3E4F1SKILNR2F6MITFPHF8IKZF1HDAC1AFF1DPF2GABPB1TAF9BE2F1NR2C1ZNF318EGR1SOX6NCOR1NFICCREB1SMARCA4ZEB2LEF1UBTFCC2D1AMTA1MBD2ARID2NBNZBTB2EHMT2PMLARID1BBRD9RNF2ATF3FOXM1POLR2GMTA2TRIM24TRIM28SMAD5TBL1XR1MLLT1MAFKNFE2L2RAD51TCF12CREMRESTMAXKLF16CBX3SMARCC2C11orf30MEIS2GATA2TAL1PKNOX1FOXK2ZKSCAN1MYCFOSMAFFCDC5LSMAD1NCOA1SMARCE1ARID3AHDAC2JUNBSTAT5AJUNMTA3CUX1TBPATF4GATA1ZNF316EP300NR2F2NEUROD1BHLHE40MXI1CEBPBJUNDIRF2RFX1NFE2IRF1TEAD4FOSL1MEF2ARBFOX2
GRIK1GH21J029648-21:29649069:C:T1.5029Enhancer297EliteDistancechr21:29648038-29650480-
ZNF316ZNF830GATAD2BKDM5BZNF592ARNTTRIP13NFRKBGATA1SMARCC2MTA2ZNF24IRF2ESRRAIRF1RBFOX2MEIS2CREB3L1HDAC2THRASMARCA4IKZF1POLR2AMNTEP400ELF1SMAD5HMBOX1NR2C1SMARCC2TAF9BNFATC3L3MBTL2ELF4ZEB2MTA3DPF2NR2F6GMEB1MGAKDM1AARID1BHDAC3ZBTB2CC2D1AETV6TRIM24NRF1ATF7UBTFNBNETS1BCORPHB2FOXM1MBD2CBX3SMAD1NCOA2HDAC1MYCIRF2TBL1XR1ARNTZNF184MLLT1NCOR1AFF1JUNKLF16YY1RCOR1RNF2EGR1MYNNMAXTAL1TCF12TRIM28FOXK2ARID3ASTAT2ZNF318SPI1EP300ZNF24MEIS2IRF1GABPAGABPB1E2F1NFE2NCOA1HNRNPLLSMARCE1SKILATF2GATA1TEAD4E2F6ZSCAN29CUX1CHAMP1RESTSOX6ZBTB40STAT5ATBPBRD9ZNF384MTA2NEUROD1CTBP1CREMNFICZNF316NR2F2CEBPBMAFKGATA2HES1ATF4PMLATF3E4F1JUNDBHLHE40LEF1C11orf30RFX1SIN3BSP1NR3C1UBTFSMARCA4HDAC1MLLT1TAL1PKNOX1HMBOX1MTA3RNF2CTBP1L3MBTL2ZSCAN29
GRIK1GH21J029655-21:29657353:C:A1.5213Enhancer476EliteDistancechr21:29655614-29658581ENSR21_B7TWM
ZNF592NFRKBRFX1NCOR1NFICKDM4BTRIM24ZBTB33CHAMP1ZNF384BRD4RBFOX2NFRKBZNF592PHF8MGAEP400C11orf30ZNF24SKILZSCAN29KDM1AGMEB1MTA3DPF2MNTPKNOX1TAF9BPOLR2AATF4CC2D1ANBNNR2F1ZNF316HDAC2CREB3L1ARNTELF4NR2C1RESTE2F1MEIS2GABPATRIM28ARID1BPMLEP300POLR2GNFICAFF1ZEB2SMARCA4NCOA2NR2F6NR3C1IRF1NFATC3CHAMP1MYCCBX1GATAD2BATF3CBX3MTA1ESRRAMTA2JUNDCTBP1JUNBGABPB1MBD2ARID3ASMARCE1TCF12ZNF318JUNZBTB11KDM4BNCOR1HMBOX1MYBL2E2F8TAL1MAFFTRIM24BCORGATA2TBL1XR1NFE2L2CUX1MAFKEHMT2RNF2HES1ZKSCAN1IKZF1ZNF184CEBPBLEF1NFE2MAXZBTB40BRD9MITFZNF639NEUROD1STAT3STAT2HDAC1E4F1ATF7YY1HCFC1TBPFOXK2EGR1SMAD1BHLHE40FOSL1MLLT1MYNNNCOA1SMARCC2FOSARHGAP35SOX6TEAD4CREMZNF384RAD21FOXM1SMAD5CTCFBRD4SPI1SMARCE1RNF2ZNF592SMARCA4HDAC1CTBP1PKNOX1NCOR1MEIS2KDM1ATRIM24NBNBRD9IKZF1HMBOX1TEAD4LEF1ZNF318GATA4MAXFOXK2GATAD2BCUX1CHAMP1TBL1XR1TFAP4DPF2EP300NEUROD1JUNDZEB2NFE2TRIM28TBPSOX6FOXA2GATA1ZBTB40ARID1BFOXA1ZBTB8AMITFTCF7ZSCAN29C11orf30MAFKMAFFZNF316ARNTMLLT1CHAMP1ZBTB33NFRKB
GRIK1GH21J029659-21:29660383:C:T1.0920Enhancer149-Distancechr21:29659902-29660631-
TRIM24CBX1TCF12ZNF592CBFA2T3TRIM28CC2D1AZEB2FOXM1ZNF316RFX1CBX1CHAMP1TRIM24ZNF280ATEAD4XRCC3HDAC1ZNF143IKZF1YY1CBX5CBX3EHMT2
GRIK1GH21J029694-None0.0000Enhancer6-Distancechr21:29694567-29694689-
TAL1
GRIK1GH21J029772-None0.0000Enhancer6-Distancechr21:29772039-29772198--
GRIK1GH21J029848-None0.0000Enhancer11-Distancechr21:29848488-29848794--
GRIK1GH21J029849-None0.0000Enhancer171-Distancechr21:29849823-29849973ENSR21_9FSW4, ENSR21_65HR5Z
TRIM28CTCFL3MBTL2EHMT2CBX3ZNF24MTA3SMC3CHD1RAD21CTBP1PHF21AIRF1SKILRXRATRIM24NCOA1MLLT1TCF7L2CC2D1ATRIM22ARID2SMARCA5ARID3ABRD4TCF7ARNTRESTEP300RB1YY1HDAC1NEUROD1CHAMP1JUNZNF143SMARCA4NFE2JUNDZNF384BHLHE40DEAF1
GRIK1GH21J029870-21:29870914:C:T0.4955Enhancer36-C-HiC,Distancechr21:29870903-29871053-
RBBP5TAF1TBPUSF1ZNF316ZBTB5
GRIK1GH21J029904-21:29904972:T:A1.2888Enhancer105-C-HiC,Distancechr21:29904963-29905113ENSR21_9FTH3
KDM1AMGANR2F1L3MBTL2NFICCTCFRAD21FOS
GRIK1GH21J029939-None0.0000Promoter184-Distancechr21:29939660-29939720ENSR21_B7XFK, GRIK1_2
SUZ12RNF2KDM4AMXI1ASH2LZNF263SIN3AKDM5B
GRIK1GH21J029941-None0.0000Promoter204-Distancechr21:29939985-29940045ENSR21_B7XFK, GRIK1_1
SUZ12ASH2LSIN3AKDM5BFOXK2GATA3NRF1CBFA2T2EZH2
GRIK1GH21J029940-21:29940116:G:A0.0760Promoter198-Distancechr21:29940114-29940174ENSR21_B7XFK, GRIK1_3
SUZ12ASH2LSIN3AKDM5BFOXK2GATA3NRF1CBFA2T2EZH2
GRIK1GH21J030060-21:30060527:T:C0.0595Enhancer19-Distancechr21:30060361-30060544--
GRIK1GH21J030072-None0.0000Enhancer56-Distancechr21:30072582-30072732ENSR21_9FX9K, ENSR21_593ZHF
CTCFSMC3RAD21FOS
GRIK1GH21J030083-None0.0000Enhancer82-Distancechr21:30083242-30083392-
SIN3ARFX1POLR2AASH2LSP1
GRIK1GH21J030088-21:30088606:G:C0.4341Enhancer6-Distancechr21:30088250-30088632--