GWAS Annotated: NECTIN1

Gene: nectin cell adhesion molecule 1

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
NECTIN1GH11J119626-11:119627046:T:G0.4747Enhancer99-Distancechr11:119626361-119627364ENSR11_CFTHK
KDM1AZNF143ETV4TCF7PCBP1IKZF1
NECTIN1GH11J119633-11:119635545:C:G0.7476Enhancer36-Distancechr11:119633946-119636562-
ZNF316
NECTIN1GH11J119659-11:119660720:C:T0.1650Enhancer133EliteDistancechr11:119659167-119660995-
MEF2BEBF1
NECTIN1GH11J119663-11:119664140:G:T0.1774Enhancer245EliteDistancechr11:119663470-119664800ENSR11_BTQ7J, ENSR11_5335XKC
SOX13MNTNCOR1NR2F6ZNF384HNRNPLEP300RESTZBTB7AXRCC5KDM1AFOXA1FOXA2CREMCTCFSP1PRPF4SMARCA4RXRATFAP4HDAC2HNF4GSKIJUNDHNF4A
NECTIN1GH11J119665-None0.0000Enhancer63EliteDistancechr11:119665790-119665800-
CTCF
NECTIN1GH11J119666-11:119667311:T:G0.6091Enhancer315EliteDistancechr11:119666332-119667486ENSR11_CFTLG, ENSR11_5335XXT, ENSR11_5335XZ4
CTCFRBM39SMC3AGO1NBNRAD21HNRNPLLSIN3AHNRNPLMXI1XRCC5ATF7ZNF207EP300TRIM22SKILNR2F2CC2D1ATBPCTBP1UBTFBHLHE40NR2F1NRF1CUX1POLR2ATBL1XR1YY1RB1MYCARID2ESRRARXRAELK1RESTZNF143JUNDSMARCA4BATFZNF263RUNX3IKZF1FOSSTAT3POLR2A
NECTIN1GH11J119669-11:119669995:T:C0.1194Enhancer1-Distancechr11:119669382-119670063--
NECTIN1GH11J119670-11:119674012:C:T0.4686Enhancer399EliteDistancechr11:119670856-119674460ENSR11_BTQ8L, ENSR11_BTQ8X
MXI1SP1RCOR1SMARCA4RAD21RXRANR2F2GATA2HCFC1ZNF143MXI1EP300POLR2AZBTB40ZNF592NFXL1ZNF217ZNF143SMARCA5IKZF1EBF1RELBIRF4STAT5AYY1CTCFTAF1TRIM22JUNBBATFSMC3KLF5DPF2RB1HDAC1SIN3ATBPSTAT3POLR2ACREMATF2ELK1IKZF2L3MBTL2PKNOX1TCF12RESTEEDNFICBHLHE40MTA2MEF2BATF7RAD21MEF2CNRF1ARNTMAXBMI1MEF2ARAD51SKILBCL3MXI1ETV6FOXK2USF2ARID3ATBX21ZNF687ZSCAN29RUNX3CUX1TBL1XR1NBNPAX5EP300E2F8RFX5MLLT1GATAD2BELF1NFYBNFATC3BACH1MYBSRFSPI1PBX3
NECTIN1GH11J119675-11:119676529:G:A0.7618Enhancer117-Distancechr11:119675860-119678469ENSR11_85J24F
ZNF184NR2F2NFE2L2CTCFFOSBHLHE40TRIM28ZBTB7BCBX5
NECTIN1GH11J119680-11:119681122:C:T0.9858Enhancer229EliteDistancechr11:119680448-119681667ENSR11_CFTMH
CTCFRFX5ZNF217CTBP1POLR2ADPF2FOXA1EP300GATA3ESR1CTCFHNRNPLSMC3RAD21
NECTIN1GH11J119683-11:119685532:G:C1.8277Enhancer356EliteeRNA_co-expression,Distancechr11:119683142-119687800ENSR11_CFTMQ
MEF2BEBF1YY1USF1RAD51MAFKC11orf30POLR2ACREB1MAFFSTAT3ZNF316MNTCLOCKPRDM10EEDGABPB1GABPAYY1SMARCA4JUNDNR2F2RUNX3STAT3CEBPBNR3C1FOSFOSL2JUNATF3MAFKMXI1GATA2CTCFPOLR2AEP300
NECTIN1GH11J119688-11:119688754:A:G0.0396Enhancer98EliteDistancechr11:119688600-119688800--
NECTIN1GH11J119689-None0.0000Enhancer63EliteDistancechr11:119689390-119689540ENSR11_93QHND-
NECTIN1GH11J119690-11:119695525:G:A0.6384Enhancer412EliteeRNA_co-expression,Distancechr11:119690164-119702813ENSR11_D7XC5, ENSR11_533658B, ENSR11_BTQCQ, ENSR11_BTQCX, ENSR11_BTQD8, ENSR11_93QHR8, ENSR11_93QHRN, ENSR11_53366Z9, ENSR11_BTQF2, ENSR11_533673H, ENSR11_533674T
IKZF1MLLT1IKZF2MTA2TRIM22BHLHE40ELF1EP300TBX21DPF2EBF1RUNX3RBM39GATAD2BCTCFRAD21POLR2AMYCSTAT3FOSEGR1ATF2PKNOX1POLR2AATF7IKZF1BHLHE40CTCFRUNX3RESTSKIGABPANR2F2XRCC5NR2F6MAXSP1JUNDZNF687ELF1EP300RXRAHNF4ATFAP4POLR2AHDAC2HNF4GSMC3RAD21FOSL2FOXA1TRIM28GATA2ESR1POLR2AMYCSTAT3FOSPOLR2ACTCFMYCFOSKDM1ABCORRBM25ZMYM3HNRNPLSPI1POLR2ASP1NR2F2HNF4AHNRNPLLXRCC5RXRAJUNDTFAP4HNF1AMAXRAD21NR2F2RXRAEGR1HNF4ASP1STAT3NR2F6SP1FOSFOSL2ZKSCAN1KDM1AZMYM3TRIM28CTCFFOSMXI1RCOR1CTCFSMARCA4SPI1
NECTIN1GH11J119704-11:119705647:G:A0.3806Enhancer195EliteDistancechr11:119704543-119705674-
TRIM28HDAC1NCOR1NR2F6KLF16LEF1TAL1CBFA2T3KDM1ANR2F1NR2F2HDAC2GATA1CBFA2T2TEAD4TCF7TCF12HDAC2KDM1A
NECTIN1GH11J119705-11:119706967:C:T1.0536Enhancer105-Distancechr11:119705985-119707879ENSR11_85J2PF
KDM1ARESTGATA3CTCFTRIM22RAD21RXRA
NECTIN1GH11J119709-11:119710175:A:G0.1197Enhancer245EliteDistancechr11:119709222-119710384ENSR11_93QHW8, ENSR11_93QHWC
ASH2LEEDRFX1SIN3AZNF143BMI1RFX5RUNX3RCOR1SMARCA4RELBSMC3MLLT1SPI1MXI1
NECTIN1GH11J119712-11:119713041:C:T0.3084Enhancer235EliteDistancechr11:119712200-119714000ENSR11_53368WQ, ENSR11_85J2TG, ENSR11_93QHXD
ASH2LSP1RESTGABPASPI1CTCFRBM39HDAC2POLR2ARXRAHNRNPKPCBP1HNF1ASP1HNF4GHNF4ATFAP4GATA4ZBTB7A
NECTIN1GH11J119715-11:119715708:C:T0.3820Enhancer56-Distancechr11:119715540-119716569-
NR2F6CTCFZSCAN29
NECTIN1GH11J119716-None0.0000Enhancer98EliteDistancechr11:119716890-119717040-
CTCFBHLHE40USF2
NECTIN1GH11J119717-None0.0000Enhancer133-Distancechr11:119717950-119718835ENSR11_85J2Z8
SMARCA4SP1NR2F2HNF4ARCOR1RXRATCF7L2TCF7
NECTIN1GH11J119721-None0.0000Enhancer173EliteDistancechr11:119721170-119721440ENSR11_CFTQF, ENSR11_5336BC4
ZNF263CTCFIKZF1XRCC5RESTEGR1TRIM22ZNF143RB1RAD21SMC3MXI1
NECTIN1GH11J119724-11:119721744:G:A0.2087Enhancer63EliteDistancechr11:119721675-119722020ENSR11_CFTQF
CTCFMXI1FOS
NECTIN1GH11J119722-11:119722742:A:G0.1396Enhancer229EliteDistancechr11:119722400-119722800ENSR11_93QJ2X
RELBIKZF1IKZF2RUNX3MTA2IRF4EBF1GATAD2BSPI1BHLHE40TCF12BCL11APOLR2ACTCF
NECTIN1GH11J119723-11:119724499:G:A0.3922Enhancer36-Distancechr11:119723601-119724640-
POLR2A
NECTIN1GH11J119725-11:119728019:G:C0.5177Promoter/Enhancer675EliteDistancechr11:119725678-119730962ENSR11_D7XDF, ENSR11_93QJ4Q, ENSR11_93QJ4W, ENSR11_5336CQ7, ENSR11_BTQK3, NECTIN1_1
MXI1CTCFEBF1POLR2ASUZ12KDM1ASIN3AHDAC2SP1ETS1ZNF143SAP30POLR2AMXI1USF1HDAC2SIN3AL3MBTL2CHD1KDM4AHNRNPLXRCC5SMC3PHF8EZH2EBF1RAD21IKZF2IKZF1GATAD2BMEF2BCTCFEEDRXRASMARCA5ZNF143BACH1BHLHE40TAF15ZNF592EP300POLR2ASAP30HNRNPLLZEB1KDM5BBHLHE40ZFXIKZF1RESTARNTSAP30ZNF217RAD21MXI1POLR2GCTCFDPF2SMC3POLR2AASH2LSMARCA5YY1BHLHE40RBFOX2HDAC2SP1RBBP5SIN3ATAF1FOXM1TBPTAF7PHF8UBTFNRF1CREB1EP300SKILCTBP1L3MBTL2ZNF263MYCXRCC5PTBP1CREMMTA3HNRNPLLNR3C1SKIZNF207HNRNPKARID3AGATAD2ARB1ATF7TRIM22HDAC1ZNF687DPF2ZBTB7ASUZ12ZNF143TFAP4RNF2DACH1ZNF444EEDGATAD2BJUNDZNF592TBL1XR1SMARCA4E2F6TCF12EGR1KDM4ASMARCA5FOSBACH1GABPANBNSP1POLR2AELF1IKZF1GATA3ARNTTAF1IKZF2RELBSPI1FOSJUNDGATA2