GWAS Annotated: NTN1

Gene: netrin 1

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
NTN1GH17J008907-17:8908361:G:A0.0606Enhancer36-C-HiCchr17:8907794-8909372-
MNT
NTN1GH17J008912-None0.0000Enhancer133EliteC-HiCchr17:8912243-8912333-
IKZF1SPI1EBF1
NTN1GH17J008929-17:8930479:T:C0.7530Enhancer36-C-HiCchr17:8929330-8932383-
CEBPB
NTN1GH17J008933-17:8935566:C:T0.6858Enhancer383EliteC-HiCchr17:8933937-8936204ENSR17_95JQG
CBFBJUNDZBED1ATF2TCF7POLR2AZBTB33ATF7ATF2IKZF2CTCFEEDIKZF1CBFBBCL3ETV6SRFNFICMEF2AMYCEP300RFX1BATFRUNX3FOSSTAT3JUNBCREMEBF1SPI1REST
NTN1GH17J009003-None0.0000Promoter236-Distancechr17:9003037-9003097ENSR17_DG3M, ENSR17_5456PP, NTN1_2
SUZ12EZH2RNF2CTCFPOLR2AZNF263RAD21SMC3MXI1BACH1TCF12GATAD2BHDAC6IKZF1ZFX
NTN1GH17J009016-17:9017282:T:C0.4964Enhancer208-eQTLs,Distancechr17:9016592-9018366ENSR17_95KM7
TRIM28ZNF263SPI1CTBP1POLR2AHMBOX1GATA3FOSESRRARFX1USF1ZNF579
NTN1GH17J009020-17:9021558:G:T0.7404Promoter/Enhancer496EliteDistancechr17:9020583-9022373ENSR17_95KNB, NTN1_1
GABPASUZ12EZH2KDM1ARNF2EBF1ASH2LKDM4AGATAD2BSIN3ATCF12HNRNPLGABPABACH1STAT1POLR2AELK1YY1EBF1MXI1IKZF1BCL3EGR1EP300MYCHDAC6RBM39EZH2HDAC2RNF2CHD1POLR2AZFXMXI1BHLHE40NR3C1CTBP1CTCFMYCSIN3ASMC3
NTN1GH17J009028-17:9028290:A:G1.2462Enhancer178-Distancechr17:9028265-9028770ENSR17_896HS, ENSR17_896J2
SP1FOSPKNOX1MYCRFX1MAFKFOXA1GATA3
NTN1GH17J009036-None0.0000Enhancer91-Distancechr17:9036443-9036593-
PKNOX1SMARCE1GATA3ESRRAFOS
NTN1GH17J009050-None0.0000Enhancer126-Distancechr17:9050363-9051693ENSR17_B3RHG
ZNF687JUNDFOSL2MYCFOSCTCFMBD2SMARCE1GATA3GATAD2BZBTB7BNFIBFOXA1DPF2ESR1FOXA1CEBPBCUX1
NTN1GH17J009052-17:9054752:G:A1.2892Enhancer160-C-HiC,Distancechr17:9052589-9055144ENSR17_95L2J, ENSR17_8973R, ENSR17_95L32
SP1RXRAYY1HNF4ARAD21CREB1FOXA1JUNDESR1ATF3MAXEGR1FOXA2RESTMYCCUX1ESR1ZNF217GATA3ZNF687EZH2DPF2MBD2ZNF24CTBP1NCOA3ASH2LSMARCE1ESR1RBBP5TAF1SP1YY1NANOGEP300RAD21TCF12HDAC2JUNDRESTZNF24FOSJUND
NTN1GH17J009072-17:9073250:TG:T0.7187Enhancer144EliteC-HiC,Distancechr17:9072383-9074172ENSR17_95L89, ENSR17_95L8N
RAD21EP300FOSFOSSUZ12JUNDEP300POLR2A
NTN1GH17J009074-None0.0000Enhancer36-Distancechr17:9074283-9074433ENSR17_95L8N
FOSSUZ12JUNDEP300POLR2A
NTN1GH17J009110-17:9110184:C:T1.5352Enhancer56-C-HiC,Distancechr17:9110043-9110193-
NANOG
NTN1GH17J009115-17:9115867:G:T1.4578Enhancer237EliteeQTLs,Distancechr17:9115081-9116469ENSR17_B3RSS
EZH2CTCFRESTSP1HNF4ARXRAUSF1ETS1TAF1JUNDATF3RAD21ASH2LXRCC5FOSFOSL2TRIM28ZNF579POLR2AZNF217GATA3YY1EP300SIN3AJUNBACH1TBPPHF8ZNF24SMARCA4SMARCE1FOXA1
NTN1GH17J009148-17:9149190:T:G1.2202Enhancer286EliteC-HiC,Distancechr17:9148902-9151787ENSR17_B3S2T, ENSR17_95M3X
RBM39FOXA1SKISOX13TBX3BHLHE40RESTGATA4EP300FOXA2ZBTB33NR2F6HDAC2TCF7GATA3ZNF316MEIS2PKNOX1
NTN1GH17J009157-17:9157932:A:G0.9809Enhancer71-Distancechr17:9157931-9158959-
HNF4ARXRAEP300
NTN1GH17J009162-17:9162781:C:T0.1747Enhancer153EliteDistancechr17:9162723-9162893-
POLR2ACTCFZBTB33RAD21YY1ZNF143
NTN1GH17J009163-17:9163633:G:A0.3858Enhancer118EliteeQTLs,Distancechr17:9163092-9164048ENSR17_B3S4Q
CTCFASH2LRBBP5POLR2ASP1TCF12FOXA1EP300FOSSTAT3
NTN1GH17J009164-17:9164858:G:C0.6417Enhancer36-Distancechr17:9164366-9165593-
CTCFRAD21RFX1
NTN1GH17J009168-17:9168934:G:T0.6132Enhancer1-Distancechr17:9168705-9169681--
NTN1GH17J009170-17:9171132:A:G0.5017Enhancer151-Distancechr17:9170443-9171881ENSR17_B3S5S
YY1ZBTB33ETV4MAXEGR1RESTHNF4AETS1SP1JUNDHNF4GATF3RAD21FOXA2RXRAHDAC2FOXA1EP300CEBPB
NTN1GH17J009173-17:9175212:A:G0.9095Enhancer111-Distancechr17:9173098-9175719-
ZNF184NR2F2MAXSP1RAD21RXRAHNF4ASP1MAXRAD21HNF4ARXRA
NTN1GH17J009183-17:9185187:G:A0.7643Enhancer99-Distancechr17:9183632-9187531-
EP300CTCFCTCF
NTN1GH17J009196-None0.0000Enhancer1-Distancechr17:9195103-9195253--
NTN1GH17J009195-17:9197298:C:T0.4590Enhancer215EliteDistancechr17:9195775-9198114ENSR17_B3S9H, ENSR17_95MK8
ZFXCTCFTRIM28ZNF444CTBP1NEUROD1ZNF217SMARCA4GATA3MYCRAD21SMARCE1DPF2FOXA1ZNF687CREB1ZNF579RELBBACH1FOSJUNDDPF2ATF7CTBP1SMARCE1PKNOX1ELF1CREB1
NTN1GH17J009198-17:9198852:C:T0.2815Enhancer1-Distancechr17:9198823-9198886--
NTN1GH17J009199-17:9201163:C:A0.5238Enhancer224EliteDistancechr17:9199022-9201775ENSR17_CWMH
RAD51MITFUSF2HCFC1ZNF143SIX5USF1ATF2IKZF2MEF2BZNF217YY1ARNTEP300MTA2TRIM22PKNOX1MEF2CNBNEBF1E2F8TBX21RELBATF7KLF5SMAD1BHLHE40ZNF207TCF12POU2F2IKZF1PAX8EP300EBF1ZBTB40
NTN1GH17J009204-17:9204874:C:G0.5423Enhancer91-eQTLs,Distancechr17:9204543-9205483-
MLLT1RELBIKZF1SPI1
NTN1GH17J009205-17:9206655:A:C0.6226Enhancer183EliteeQTLs,Distancechr17:9205965-9207653ENSR17_B3SC3
ESR1CTCFFOXA1JUNDMAXFOXA2RXRASP1ZNF579CTCFHNF4ACUX1ESR1YY1RAD21ESRRA
NTN1GH17J009216-17:9216934:C:T0.9802Enhancer245EliteDistancechr17:9216515-9218558ENSR17_CWNR
EP300NR3C1ZNF384ESRRAFOXA1ZNF263CREB1ATF7JUNDSTAT3FOSCEBPBATF2FOSESRRA
NTN1GH17J009219-None0.0000Enhancer56-Distancechr17:9219943-9220093-
MNTKDM1A
NTN1GH17J009220-17:9220793:T:C0.3804Enhancer56-Distancechr17:9220723-9220873-
CTCF
NTN1GH17J009221-17:9221155:C:CG0.2779Enhancer56-Distancechr17:9221043-9221193-
USF1
NTN1GH17J009225-17:9225753:G:A0.5981Enhancer118EliteDistancechr17:9225743-9225893ENSR17_B3SFQ
CTCFTCF12GABPANANOGZNF143RAD21
NTN1GH17J009226-17:9226964:C:G0.1759Enhancer178EliteDistancechr17:9226714-9227495ENSR17_B3SFW
IKZF1IKZF2RUNX3BHLHE40SOX6ZKSCAN1CREB1NR2C2NFIC
NTN1GH17J009227-17:9228070:G:T0.5728Enhancer306EliteeRNA_co-expression,Distancechr17:9227947-9229398ENSR17_B3SG6, ENSR17_546LFD
NFICNFATC1BCL3PBX3MAFKZNF316TAF1EGR1ATF7CTCFARID1BIKZF1STAT5AJUNDATF3EP300STAT3FOSMEIS2BCL3PBX3
NTN1GH17J009229-17:9230077:C:G1.2303Enhancer133EliteDistancechr17:9229962-9230573ENSR17_95MWT
USF1
NTN1GH17J009232-None0.0000Enhancer161EliteDistancechr17:9232343-9233247ENSR17_95MXJ
POLR2A
NTN1GH17J009236-17:9238467:G:A1.0727Enhancer222EliteDistancechr17:9236673-9238566ENSR17_89BZZ
ATF2CHD4RAD21RFX1SKINCOR1TBX3RNF2EP300KDM1AFOXK2HNF4ATBL1XR1RFX5SP1MXI1RBM22HNF4GTFAP4ASH2LEBF1MEF2BSPI1
NTN1GH17J009238-17:9243942:T:C1.4084Enhancer338EliteDistancechr17:9238577-9245872ENSR17_95N3X
IKZF1SIN3AGATAD2BKDM4AZBTB33POLR2AMGANRF1MAXZNF687L3MBTL2USF2USF1EZH2CTCFE2F6EP300BHLHE40L3MBTL2RESTEP300ATF7TRIM28E2F1E4F1JUNDCREB1ATF3POLR2GGABPASP1CREMFOXA2FOXA1CTCFPOLR2ALCORLNFIBPOLR2AEP300CEBPBFOSKDM1A
NTN1GH17J009252-17:9252928:ATGTGACACCGTC:A0.7602Enhancer178EliteC-HiCchr17:9252606-9253888-
CEBPB
NTN1GH17J009289-17:9290301:T:G0.4325Enhancer250EliteC-HiCchr17:9289807-9292896ENSR17_95NK5, ENSR17_B3SRD
MLLT1TRIM22ZNF207ZNF143DPF2NBNMTA2NFATC1NFATC3ZNF217NFICARNTATF7ATF2EGR1ARID3AEP300IKZF1SKILTBX21ELF1RCOR1RAD51CREMBHLHE40NRF1TBL1XR1TBPEBF1MXI1BACH1GABPACUX1RELBIKZF2BCL11AMEF2BBCL3ZNF384PBX3SMC3SPI1RUNX3JUNBPKNOX1EEDMEF2AMEF2CIRF4FOSSTAT3BATFIRF3ETV6TCF12SMARCA5EBF1CTCFGATAD2BTRIM22ZNF143CREB1RESTRAD21BACH1YY1RUNX3PKNOX1RB1SMC3PAX5PBX3EP300MEF2A
NTN1GH17J009346-None0.0000Enhancer82-C-HiCchr17:9346403-9346553ENSR17_95P6F
RUNX3ZBTB40
NTN1GH17J009367-17:9367384:A:G1.1092Enhancer36-C-HiCchr17:9367199-9367401ENSR17_89FQX-
NTN1GH17J009370-17:9371480:A:G0.9218Enhancer218EliteC-HiCchr17:9370125-9372451ENSR17_CX4T
MAFKMAFFFOXA2ATF2CTCFFOXA1BHLHE40CEBPBNFE2L2TCF12RESTSP1JUNBFOSEP300FOSL2BATFJUNDMEF2ARUNX3MEF2CCEBPBMAFKFOXA1STAT3CTCF
NTN1GH17J009537-17:9537037:C:T0.2165Enhancer82-C-HiCchr17:9537022-9537603-
HCFC1ZNF143USF1FOXA2FOXA1