GWAS Annotated Elements: NTN1

Gene: netrin 1

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH17J008907 - 17:8908361:G:A 0.0606 Enhancer - C-HiC chr17:8907794-8909372
MNT
GH17J008912 - None 0.0000 Enhancer Elite C-HiC chr17:8912243-8912333
IKZF1SPI1EBF1
GH17J008929 - 17:8930479:T:C 0.7530 Enhancer - C-HiC chr17:8929330-8932383
CEBPB
GH17J008933 - 17:8935566:C:T 0.6858 Enhancer Elite C-HiC chr17:8933937-8936204
CBFBJUNDZBED1ATF2TCF7POLR2AZBTB33ATF7ATF2IKZF2CTCFEEDIKZF1CBFBBCL3ETV6SRFNFICMEF2AMYCEP300RFX1BATFRUNX3FOSSTAT3JUNBCREMEBF1SPI1REST
GH17J009003 - None 0.0000 Promoter - Distance chr17:9003037-9003097
SUZ12EZH2RNF2CTCFPOLR2AZNF263RAD21SMC3MXI1BACH1TCF12GATAD2BHDAC6IKZF1ZFX
GH17J009016 - 17:9017282:T:C 0.4964 Enhancer - eQTLs,Distance chr17:9016592-9018366
TRIM28ZNF263SPI1CTBP1POLR2AHMBOX1GATA3FOSESRRARFX1USF1ZNF579
GH17J009020 - 17:9021558:G:T 0.7404 Promoter/Enhancer Elite Distance chr17:9020583-9022373
GABPASUZ12EZH2KDM1ARNF2EBF1ASH2LKDM4AGATAD2BSIN3ATCF12HNRNPLGABPABACH1STAT1POLR2AELK1YY1EBF1MXI1IKZF1BCL3EGR1EP300MYCHDAC6RBM39EZH2HDAC2RNF2CHD1POLR2AZFXMXI1BHLHE40NR3C1CTBP1CTCFMYCSIN3ASMC3
GH17J009028 - 17:9028290:A:G 1.2462 Enhancer - Distance chr17:9028265-9028770
SP1FOSPKNOX1MYCRFX1MAFKFOXA1GATA3
GH17J009036 - None 0.0000 Enhancer - Distance chr17:9036443-9036593
PKNOX1SMARCE1GATA3ESRRAFOS
GH17J009050 - None 0.0000 Enhancer - Distance chr17:9050363-9051693
ZNF687JUNDFOSL2MYCFOSCTCFMBD2SMARCE1GATA3GATAD2BZBTB7BNFIBFOXA1DPF2ESR1FOXA1CEBPBCUX1
GH17J009052 - 17:9054752:G:A 1.2892 Enhancer - C-HiC,Distance chr17:9052589-9055144
SP1RXRAYY1HNF4ARAD21CREB1FOXA1JUNDESR1ATF3MAXEGR1FOXA2RESTMYCCUX1ESR1ZNF217GATA3ZNF687EZH2DPF2MBD2ZNF24CTBP1NCOA3ASH2LSMARCE1ESR1RBBP5TAF1SP1YY1NANOGEP300RAD21TCF12HDAC2JUNDRESTZNF24FOSJUND
GH17J009072 - 17:9073250:TG:T 0.7187 Enhancer Elite C-HiC,Distance chr17:9072383-9074172
RAD21EP300FOSFOSSUZ12JUNDEP300POLR2A
GH17J009074 - None 0.0000 Enhancer - Distance chr17:9074283-9074433
FOSSUZ12JUNDEP300POLR2A
GH17J009110 - 17:9110184:C:T 1.5352 Enhancer - C-HiC,Distance chr17:9110043-9110193
NANOG
GH17J009115 - 17:9115867:G:T 1.4578 Enhancer Elite eQTLs,Distance chr17:9115081-9116469
EZH2CTCFRESTSP1HNF4ARXRAUSF1ETS1TAF1JUNDATF3RAD21ASH2LXRCC5FOSFOSL2TRIM28ZNF579POLR2AZNF217GATA3YY1EP300SIN3AJUNBACH1TBPPHF8ZNF24SMARCA4SMARCE1FOXA1
GH17J009148 - 17:9149190:T:G 1.2202 Enhancer Elite C-HiC,Distance chr17:9148902-9151787
RBM39FOXA1SKISOX13TBX3BHLHE40RESTGATA4EP300FOXA2ZBTB33NR2F6HDAC2TCF7GATA3ZNF316MEIS2PKNOX1
GH17J009157 - 17:9157932:A:G 0.9809 Enhancer - Distance chr17:9157931-9158959
HNF4ARXRAEP300
GH17J009162 - 17:9162781:C:T 0.1747 Enhancer Elite Distance chr17:9162723-9162893
POLR2ACTCFZBTB33RAD21YY1ZNF143
GH17J009163 - 17:9163633:G:A 0.3858 Enhancer Elite eQTLs,Distance chr17:9163092-9164048
CTCFASH2LRBBP5POLR2ASP1TCF12FOXA1EP300FOSSTAT3
GH17J009164 - 17:9164858:G:C 0.6417 Enhancer - Distance chr17:9164366-9165593
CTCFRAD21RFX1
GH17J009168 - 17:9168934:G:T 0.6132 Enhancer - Distance chr17:9168705-9169681 -
GH17J009170 - 17:9171132:A:G 0.5017 Enhancer - Distance chr17:9170443-9171881
YY1ZBTB33ETV4MAXEGR1RESTHNF4AETS1SP1JUNDHNF4GATF3RAD21FOXA2RXRAHDAC2FOXA1EP300CEBPB
GH17J009173 - 17:9175212:A:G 0.9095 Enhancer - Distance chr17:9173098-9175719
ZNF184NR2F2MAXSP1RAD21RXRAHNF4ASP1MAXRAD21HNF4ARXRA
GH17J009183 - 17:9185187:G:A 0.7643 Enhancer - Distance chr17:9183632-9187531
EP300CTCFCTCF
GH17J009196 - None 0.0000 Enhancer - Distance chr17:9195103-9195253 -
GH17J009195 - 17:9197298:C:T 0.4590 Enhancer Elite Distance chr17:9195775-9198114
ZFXCTCFTRIM28ZNF444CTBP1NEUROD1ZNF217SMARCA4GATA3MYCRAD21SMARCE1DPF2FOXA1ZNF687CREB1ZNF579RELBBACH1FOSJUNDDPF2ATF7CTBP1SMARCE1PKNOX1ELF1CREB1
GH17J009198 - 17:9198852:C:T 0.2815 Enhancer - Distance chr17:9198823-9198886 -
GH17J009199 - 17:9201163:C:A 0.5238 Enhancer Elite Distance chr17:9199022-9201775
RAD51MITFUSF2HCFC1ZNF143SIX5USF1ATF2IKZF2MEF2BZNF217YY1ARNTEP300MTA2TRIM22PKNOX1MEF2CNBNEBF1E2F8TBX21RELBATF7KLF5SMAD1BHLHE40ZNF207TCF12POU2F2IKZF1PAX8EP300EBF1ZBTB40
GH17J009204 - 17:9204874:C:G 0.5423 Enhancer - eQTLs,Distance chr17:9204543-9205483
MLLT1RELBIKZF1SPI1
GH17J009205 - 17:9206655:A:C 0.6226 Enhancer Elite eQTLs,Distance chr17:9205965-9207653
ESR1CTCFFOXA1JUNDMAXFOXA2RXRASP1ZNF579CTCFHNF4ACUX1ESR1YY1RAD21ESRRA
GH17J009216 - 17:9216934:C:T 0.9802 Enhancer Elite Distance chr17:9216515-9218558
EP300NR3C1ZNF384ESRRAFOXA1ZNF263CREB1ATF7JUNDSTAT3FOSCEBPBATF2FOSESRRA
GH17J009219 - None 0.0000 Enhancer - Distance chr17:9219943-9220093
MNTKDM1A
GH17J009220 - 17:9220793:T:C 0.3804 Enhancer - Distance chr17:9220723-9220873
CTCF
GH17J009221 - 17:9221155:C:CG 0.2779 Enhancer - Distance chr17:9221043-9221193
USF1
GH17J009225 - 17:9225753:G:A 0.5981 Enhancer Elite Distance chr17:9225743-9225893
CTCFTCF12GABPANANOGZNF143RAD21
GH17J009226 - 17:9226964:C:G 0.1759 Enhancer Elite Distance chr17:9226714-9227495
IKZF1IKZF2RUNX3BHLHE40SOX6ZKSCAN1CREB1NR2C2NFIC
GH17J009227 - 17:9228070:G:T 0.5728 Enhancer Elite eRNA_co-expression,Distance chr17:9227947-9229398
NFICNFATC1BCL3PBX3MAFKZNF316TAF1EGR1ATF7CTCFARID1BIKZF1STAT5AJUNDATF3EP300STAT3FOSMEIS2BCL3PBX3
GH17J009229 - 17:9230077:C:G 1.2303 Enhancer Elite Distance chr17:9229962-9230573
USF1
GH17J009232 - None 0.0000 Enhancer Elite Distance chr17:9232343-9233247
POLR2A
GH17J009236 - 17:9238467:G:A 1.0727 Enhancer Elite Distance chr17:9236673-9238566
ATF2CHD4RAD21RFX1SKINCOR1TBX3RNF2EP300KDM1AFOXK2HNF4ATBL1XR1RFX5SP1MXI1RBM22HNF4GTFAP4ASH2LEBF1MEF2BSPI1
GH17J009238 - 17:9243942:T:C 1.4084 Enhancer Elite Distance chr17:9238577-9245872
IKZF1SIN3AGATAD2BKDM4AZBTB33POLR2AMGANRF1MAXZNF687L3MBTL2USF2USF1EZH2CTCFE2F6EP300BHLHE40L3MBTL2RESTEP300ATF7TRIM28E2F1E4F1JUNDCREB1ATF3POLR2GGABPASP1CREMFOXA2FOXA1CTCFPOLR2ALCORLNFIBPOLR2AEP300CEBPBFOSKDM1A
GH17J009252 - 17:9252928:ATGTGACACCGTC:A 0.7602 Enhancer Elite C-HiC chr17:9252606-9253888
CEBPB
GH17J009289 - 17:9290301:T:G 0.4325 Enhancer Elite C-HiC chr17:9289807-9292896
MLLT1TRIM22ZNF207ZNF143DPF2NBNMTA2NFATC1NFATC3ZNF217NFICARNTATF7ATF2EGR1ARID3AEP300IKZF1SKILTBX21ELF1RCOR1RAD51CREMBHLHE40NRF1TBL1XR1TBPEBF1MXI1BACH1GABPACUX1RELBIKZF2BCL11AMEF2BBCL3ZNF384PBX3SMC3SPI1RUNX3JUNBPKNOX1EEDMEF2AMEF2CIRF4FOSSTAT3BATFIRF3ETV6TCF12SMARCA5EBF1CTCFGATAD2BTRIM22ZNF143CREB1RESTRAD21BACH1YY1RUNX3PKNOX1RB1SMC3PAX5PBX3EP300MEF2A
GH17J009346 - None 0.0000 Enhancer - C-HiC chr17:9346403-9346553
RUNX3ZBTB40
GH17J009367 - 17:9367384:A:G 1.1092 Enhancer - C-HiC chr17:9367199-9367401 -
GH17J009370 - 17:9371480:A:G 0.9218 Enhancer Elite C-HiC chr17:9370125-9372451
MAFKMAFFFOXA2ATF2CTCFFOXA1BHLHE40CEBPBNFE2L2TCF12RESTSP1JUNBFOSEP300FOSL2BATFJUNDMEF2ARUNX3MEF2CCEBPBMAFKFOXA1STAT3CTCF
GH17J009537 - 17:9537037:C:T 0.2165 Enhancer - C-HiC chr17:9537022-9537603
HCFC1ZNF143USF1FOXA2FOXA1