GWAS Annotated Elements: PARS2

Gene: prolyl-tRNA synthetase 2, mitochondrial

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH01J053942 - 1:53942878:C:T 0.2287 Promoter/Enhancer Elite TF_co-expression chr1:53942618-53948005
GATA1HDAC1TRIM28ARID1BSMARCA4DPF2GATA3MAFFE2F1SMARCC2ZNF592HMBOX1HDAC2ZEB2JUNDESR1E4F1ZNF316CTBP1MTA3MNTZNF579TEAD4FOXA1ELF4BRD9GATAD2BTRIM24ASH1LSOX6ZNF184PRDM10CREB3L1ZNF24PKNOX1SMARCA5SKILATF4MEIS2NFATC3FOXK2RESTMLLT1RFX1L3MBTL2MITFFOSCREMEHMT2NCOA1C11orf30RAD51PYGO2USF1SMARCB1EP400IKZF1ZEB2SMARCA4ARID1BSMARCB1SMARCE1ZSCAN29RNF2TRIM28ZNF384MAXRLFHDAC1HMBOX1MLLT1AFF1ZBTB2GATAD2AE2F1LEF1ELF1ZBTB33IKZF1SAP30NCOA1PRDM10EGR1HDAC1MTA1HDAC2SMARCA4FOXK2ZBTB40LEF1ESRRAMYCSTAT5AZNF263UBTFE2F4ZFXCREB3L1KDM4ASIN3AMEF2BPOLR2AIKZF1L3MBTL2KDM5ADPF2HDAC1PHF8RBFOX2MLLT1E2F7NBNATF7ASH2LTAF1MNTZNF24RNF2GATAD2BPOLR2GETV6MXI1KDM1APRDM10MTA3SKILPCBP1HDAC2BCORRAD21ZNF639ZSCAN29ELF1TRIM22E2F8HNRNPLLYY1FIP1L1SMARCA5SMAD5RB1RBBP5CTCFZBTB2ZEB2E2F1E2F6TRIM24STAT1ZNF207PHF21AESRRAMBD2RLFPHF20RUNX3SAP30ZNF282HNRNPLHCFC1MTA2GATAD2ARCOR1PAX5EP300KDM4BMTA1CTBP1AGO2POU2F2TBPE4F1SOX6GMEB1UBTFKDM5BGABPB1SMARCA4HNRNPKZBTB40MAXCEBPBZHX2ETS1RBM39IRF1ZBTB7ASAFBSP1RXRANFE2E2F4BACH1ZNF143ZBTB33RBM39KDM4AEGR1CTCFNRF1RBFOX2IRF1PRDM10ZFXTAF1POLR2GPHF8MEF2BZNF687SIN3AMBD2POLR2AHNF4AHCFC1RB1KDM5AEBF1MYCGATAD2BRESTMXI1FUSBHLHE40DPF2PCBP1SMAD1ASH2LMNTARID3ASMAD5ZNF639ELF1IKZF1MITFL3MBTL2HDAC2ZEB2ATF7MEIS2JUNKDM5BKDM1AXRCC5SIN3BRNF2ARNTBACH1PHF20NFICEGR1HNRNPKHNRNPLSMARCA5FIP1L1MTA3CTBP1MAXE2F6GATAD2ATHAP1NR3C1SAFBRAD21GMEB1ARID1BMTA2MNTTAF1MLLT1ZSCAN29IKZF2SMARCE1ZBTB40NFRKBIKZF1TCF12NBNNCOA1ZNF407ZNF184NR3C1ARID2ARHGAP35TRIM24SMARCA4ZNF639NFXL1ZNF280AZBTB5ATF4ASH1LSUZ12PCBP2EHMT2ZNF444ZNF263PHB2MIER1ZBTB2SAP30MAXGATAD2AKDM1A
GH01J054051 - 1:54053622:C:T 0.6350 Promoter/Enhancer Elite TF_co-expression chr1:54051326-54054981
NR2F6RBFOX2SIN3ATBPMXI1FOXA2WRNIP1PHF8FOXA1SMARCE1ZNF24POLR2AMAXPHF20ATF2BCORMTA2HMBOX1RAD21TEAD4SOX6ZSCAN29TAF1CBX3RBM39FOXA2PKNOX1CHD1KDM5BMYCTBPNCOR1MEIS2IKZF1ATF7CUX1FOXK2KDM5AARNTGABPB1HCFC1ZBTB7AEEDASH1LU2AF1PRDM10GABPARBM22HDAC2SMARCA4UBTFCTCFDPF2ETV4ZNF184ZFXNFATC3RBFOX2ELF1NFYBELK1SMARCE1SAP30DNMT1CLOCKAGO2SMC3EP300GATAD2BHDAC1ARID1BPOLR2GTAF9BZFP91YY1RESTRB1AGO1SIN3BPHF20ASH2LSMAD5EHMT2PRDM10RBBP5RELBKDM4AHNRNPLLTBPPOU2F2BACH1NBNFOXK2KLF5MNTC11orf30NFRKBIKZF2MEF2BSTAT3EGR1JUNDMYBL2ZBTB40CBX3SPI1NRF1PKNOX1E4F1ELF1CTBP1FOXA1TAF15IRF1SP1ZNF143MEIS2FIP1L1RBM39RAD21ZBTB33AFF1ZNF444BHLHE40NR2F2PCBP1TRIM28NCOA1IKZF1MTA3SKILRXRAE2F6MXI1NEUROD1HCFC1SREBF1PAX5CREMMAXELF4EP400PBX3RNF2ZNF592ELK1FOSZNF217L3MBTL2HNF4ARAD51USF2ARNTTEAD4CREB1HDAC3SREBF2SOX6FOXM1ATF3ZNF639GMEB1CREB3L1TBX3SETDB1ZEB2MTA1ATF2MYCE2F1ESRRAZNF24SUZ12PYGO2JUNBMITFTBX21JUNETS1ZBTB11ATF7SIX5TCF12TCF7HNF1AMAFKUSF1ZHX2TFAP4TBL1XR1ARID3ATCF7L2ZNF507ZNF574CBFBESR1SRFE2F8RB1TRIM24STAT1HES1PMLDEAF1MBD2TAL1ZNF407RUNX1NR2C1ASH1LTHAP1RUNX3KDM4BSIN3BZNF316XRCC5DPF2SPI1CEBPBSMARCA4SMAD5KDM5BBACH1ZNF687SAP30SMARCA5NR3C1CLOCKSMC3RFX1UBTFPKNOX1MYCCUX1MNTGATAD2BELF1HMBOX1ZSCAN29CREB3L1ELF4IRF1MTA2NFRKBCREMMAXSMARCA4SMARCE1LEF1SMARCC2NR2C1HDAC1HCFC1HDAC2ZEB2FOXM1DPF2NFICTCF12NR2F6DACH1SOX6CBFA2T3TRIM28TCF7NCOR1ARID1BSTAT5ATAL1FOXK2ARNTEP300GATA2RESTKDM1ASIX5NR2F1CBFA2T2RAD21TEAD4PRDM10NR2F2MEIS2ZMYM3SMARCA5
GH01J054615 - 1:54615310:G:T 0.4921 Enhancer - TF_co-expression chr1:54615227-54616108
KDM1ANRF1SKILZNF263ATF7ATF2CREME2F1
GH01J054763 - 1:54764790:C:G 0.7233 Promoter/Enhancer Elite eQTLs,Distance chr1:54763485-54765366
NR2F6ZSCAN29HDAC1ZHX1ZFXKDM5AIKZF2MGARNF2EP300ELF4AGO2RBFOX2PHF8XRCC5IKZF1CLOCKSMARCE1RELBNBNSMARCA4EEDZBTB7ATRIM22IRF1NCOA1CHD1DPF2ASH2LNEUROD1ZFP91HES1ZNF407RESTPOLR2GSPI1NFATC3ZNF282SIN3AZNF639MLLT1POLR2AAGO1SKILGATAD2BZNF207EGR1UBTFMTA2NRF1TEAD4PHF20RBBP5HDAC2ZHX2MXI1BACH1MTA3L3MBTL2PMLCTCFHNRNPLARID2RB1RBM39ZBTB2GABPB1MNTUSF2YY1TBX3ZNF24MAXZBTB33ESRRAHNRNPLLHNRNPH1SMC3FIP1L1TAF7ELF1KLF5RCOR1NR2F2MYCSOX6TAF15TAF1KDM5BTBPEP400EP300SMAD5JUNDCREB3L1RUNX3PAX5MEIS2FUSSAP30BHLHE40RAD21POU2F2GMEB1CTBP1ZBTB40RFX5KDM4BE2F1GATA1SP1ZNF574GABPAETS1USF2SIX5CREMFOXK2RXRACBX3MBD2HCFC1E2F4RFX1ETV4ELF4ELF1ZNF217SRFELK1E4F1ZNF143PKNOX1NFYBTHAP1FOXA2FOXA1USF1IRF3E2F8ZNF444SPI1STAT3PHF21ANFE2L2GATA3NANOGFOSATF7MEF2BNR2C1TFAP4C11orf30ZNF830BMI1JUNRBM25TRIP13MYNNCREB1ATF3ATF2ARID3ACUX1MAFKESR1MAFFCEBPBSTAT5AUBTFTAL1MLLT1MTA1CTCF
GH01J054775 - 1:54775326:C:CG 0.5399 Enhancer - eQTLs chr1:54775247-54775397
L3MBTL2MGATBPCBX3PKNOX1SP1MNTRESTMAXRAD51EGR1MITFBHLHE40USF2IRF1ASH1LUSF1ATF3NFYBRBM25CBFA2T2PBX3
GH01J054776 - 1:54777294:T:C 0.6701 Enhancer - eQTLs chr1:54776157-54777337
SPI1ZNF263SMARCA4ZFX
GH01J054792 - 1:54796079:T:C 1.3003 Promoter/Enhancer Elite C-HiC chr1:54792784-54802259
RFX1MXI1USF1RCOR1EP300GATA3GATA2FOSHNF4AHNF4GFOSL2STAT3CTCFPOLR2ASIN3ASP1NRF1MAFKPKNOX1NFE2L2CTBP1FOXA2BACH1RXRAESRRARAD21TFAP4MNTZNF316MAFFEP300PRDM10SMC3RESTGATA2GATA3NRF1POLR2AEP300ZMYM3RBM25POLR2AHNF4ACTCFDPF2IKZF2NFICSMARCA5ATF2NFXL1ZNF143JUNBCREB1ATF7CBFBIRF4STAT3FOSCEBPBCREMBATFJUNDATF4ATF3RXRAHNF4AMYCPOLR2AIKZF1RUNX3CTCFCREB1ZNF263EEDTAF15KDM4APOLR2AIKZF1CTCFYY1MLLT1RAD21MAXATF7RB1ELF1ZBTB7ASP1GATAD2BNBNCREMSKILNRF1BHLHE40GABPB1DPF2UBTFBCORZEB2HDAC2ETS1CEBPBKDM1ATBPEHMT2IKZF2HNF4ASMARCA5CTBP1GABPAJUNDZNF217ZNF143C11orf30SMARCA4ZNF316CREB3L1TRIM22SMARCE1HDAC1RXRAXRCC5IRF4BACH1MAFKEP300NFE2ZNF263
GH01J054882 - 1:54882636:A:G 0.6648 Promoter/Enhancer Elite TF_co-expression chr1:54882270-54890116
SPI1BCL3SP1GABPAMAFKTFAP4RESTSTAT3ZBTB33TCF12ARID3AJUNDNFE2L2FOSL2FOSFOXA1FOXA2RBFOX2CTCFAGO2POLR2ASIN3AXRCC5RBM39HNRNPLRESTKDM1ATAF1RAD21YY1ASH2LNR2F6JUNDRBM22MAXTFAP4SP1HNF1AZBTB33SOX13EP300EGR1MYCFOXA2NR3C1FOXA1HDAC2RXRASMC3HNF4AATF3CEBPBELF1FOSHDAC1SIN3ATCF7TBX3MNTRAD51ZNF687BHLHE40FOXA1FOXA2USF2USF1CBFA2T3FOSSPI1MAFKSMARCA4RBFOX2GATA1L3MBTL2GATA3HDAC2SIN3AYY1RNF2SP1NR2F2GATA2POLR2AMAXATF3RAD21HNF4ARXRAMNTFOSHMBOX1EZH2MLLT1MYCSAP30MLLT1ASH2LZNF687CHD1RXRAHNF4AELF1MAXTAF1E4F1EGR1TBL1XR1ELF4STAT3EP300ARNTIKZF1TCF12FOSSMARCE1ZKSCAN1ZNF184HDAC1GABPB1ZFXNBNCC2D1AZBTB40LEF1ZNF24BRD4SP1DPF2ZEB2HNRNPKETV6TRIM24BCORRBFOX2MYCPOLR2GGABPAMXI1UBTFSIN3AMNTGMEB1KDM5APOLR2ACTCFAGO2RBM22ZNF263BHLHE40TAF9BRNF2NRF1HDAC2CTBP1PHF8GATA3HES1L3MBTL2GATA1PHF20MGASKILSAP30SMARCA5RBM39CREMDPF2CREB3L1GATA2PHF21ATAF1KLF5TRIM22PRPF4SMARCA4KDM4AMITFRB1ZNF687YY1SAFBCBX1ZNF143HDAC6SIN3BHNRNPLLTEAD4EP300RFX5KDM5BCHD1TBX3RESTRAD21XRCC5TCF7TBPIRF1SMAD5THAP1E2F6BACH1RBM34ZNF207SP1MTA3PMLRBM25FUSBHLHE40ASH1LEP400E2F4GATAD2BMBD2SREBF1SREBF2IRF3NCOR1ZBTB5ESRRASRSF4NEUROD1NFYBZNF579RBBP5HNRNPLCC2D1AHNRNPH1ZBTB7AETS1NFICE4F1MLLT1TAF7TAF15PHF21ASMARCA4EGR1SMARCE1ZSCAN29TFAP4PKNOX1ARID1BZNF217ZNF592FOSKDM4AHNF4GGATAD2AE2F1PRDM10NR2F1IKZF1UBTFRLFAGO2HDAC2E2F6JUNDZFXFOXK2ZEB1MTA1ATF4MIER1NCOA1ZNF24NR2F2FOXA1FOXA2ASH2LHNF4AYY1RAD21RXRAMYCCEBPBSPI1TAF1KDM1AFOSL2XRCC5HDAC1RBM22POLR2ATCF12EHMT2TBPRESTMNTFOXA2CTBP1TBX3SKIETV4ZNF24JUNDEP300MAXSP1SOX13NR2F2GATA4HNF1ABHLHE40ZBTB33TCF7CREB1HNF4ARXRAFOXA1NCOR1DPF2CREMATF3HDAC2TBL1XR1FOXP1HNF4GNR2F6ZNF384GATA3ARID3AFOSL2FOXK2ATMCEBPBRAD21LCORLCTCFHDAC2ZMYM3NR2F6SP1RFX1FOXA2