GWAS Annotated Elements: PIGX

Gene: phosphatidylinositol glycan anchor biosynthesis class X

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH03J196638 - 3:196640988:G:A 1.1022 Promoter/Enhancer Elite Distance chr3:196638539-196647017
MTA3BACH1EP300ZNF687EZH2MLLT1TAF1RBFOX2CTCFPOLR2GPOLR2ANCOR1ZNF592POU2F2EP400MNTHNRNPLLZBTB40MAXZBTB7ATBL1XR1KDM5BNCOA6ETV6E2F6SMAD5YY1KDM4AEGR1GATA1EP300MYCNRF1ZNF687UBTFMXI1RB1BHLHE40ELF1TBPCREMHDAC1PCBP1GABPAMGACBX5L3MBTL2FOSRELBHCFC1USF2RAD51USF1GABPB1RBM14DPF2RAD21RNF2FIP1L1RBM22GMEB1MEF2ACTBP1SMAD1PHF8KLF5SMARCA4IKZF1ETS1BACH1ZNF24U2AF1CREB3L1ZNF639GATAD2ATRIM22POU2F2GATAD2BMLLT1BCL11ASAFBCHD1RUNX3CHD4BRD4NCOR1RLFTBX21ESRRANR2F1BRD9ZSCAN29MTA3NBNNFICNFRKBFOXM1BCORRNF2CC2D1AZNF217ARNTRBM39PHF20DACH1MYNNZFP91TRIM24HDAC2PTBP1CBX1CDC5LKDM1ACBX3ZMYM3RCOR1SMARCA5IRF1CREMZNF143AFF1RBM25CBFBMYCMGAMAXL3MBTL2ZNF687MXI1SPI1BHLHE40JUNDTAF1IKZF2ZMYM3ZNF217KDM1AHDAC2SMARCA5IKZF1SKILEGR1ATF2YY1RUNX3POU2F2JUNBEBF1GATAD2BBATFNFICPOLR2APKNOX1BCL3FOSMEIS2CREMJUNDCREB1TBPSMARCA5RAD51BHLHE40ZBTB40ZNF687YY1IKZF1MLLT1CHD4RB1ZBTB33CHD1SIN3ACUX1RBFOX2POLR2AZNF384TRIM22IKZF1RELBTBX21STAT5AIKZF2ATF7MEF2BTAF1MTA2TBPETV6JUNBNBNZBED1ARNTSTAT3CBFBNFATC1SKILEEDBHLHE40BMI1RAD51USF2ZNF143E2F8EP300NFICRUNX3BATFNFATC3DPF2ATF2MEF2ASRFMTA3ELF1NFYBPOU2F2PAX5SPI1BCL3SMAD1JUNDMXI1CREMTCF12KLF5MAXZNF687ZBTB33EBF1YY1MYBBACH1MEF2CBCL11AGATAD2BIRF4ZNF592SMARCA5PKNOX1RAD21WRNIP1POLR2AZBTB33SPI1SRFMAFKZNF316C11orf30
GH03J196647 - 3:196648023:A:G 0.1089 Enhancer Elite Distance chr3:196647989-196648139
NANOG
GH03J196648 - 3:196648269:T:G 0.4270 Enhancer Elite Distance chr3:196648206-196650008
NANOGPOLR2A
GH03J196650 - 3:196650571:G:A 1.2784 Enhancer Elite Distance chr3:196650034-196652795
POLR2ACTBP1MXI1IKZF1ATF7EGR1NR2F2SMARCA4MNTZEB2KDM1AZNF592RCOR1GATA2JUNDZNF263MYCARNTNFICNCOR1FOSL2ZNF184CBFA2T2NEUROD1SMARCC2DPF2MYNNCBX3MAXJUNBGABPATRIM24TEAD4JUNSPI1FOSSMARCE1CREMEP300ATF3ARID1BNFE2TAL1GATA3LEF1CBFA2T3MITFEHMT2TBL1XR1HDAC1FOSL1BHLHE40HDAC2RAD21GATA1ZNF316RNF2TBPFOXA1TCF12SOX6CEBPBMAFKBCORMLLT1RESTCTCFRAD21
GH03J196653 - None 0.0000 Enhancer Elite Distance chr3:196653151-196653280
HSF1GATA3
GH03J196654 - 3:196654965:A:G 0.8038 Enhancer Elite Distance chr3:196654129-196655230
FOSCTCFNR3C1
GH03J196655 - 3:196656932:G:A 1.9261 Enhancer - Distance chr3:196655998-196657114
NR2F2
GH03J196660 - 3:196661228:G:C 0.3771 Enhancer - Distance chr3:196660475-196661703
POLR2AMYCRFX1GATA3ZNF574CLOCKZNF687ZBTB33ZNF592RCOR1PKNOX1RAD51ZNF217ZHX2ZNF512BNFICMNTCTBP1CREB1NFIBDPF2MTA1SMARCE1NR3C1POLR2AZBTB33CTCFZNF687CTBP1MYCNFIBNFIC
GH03J196662 - 3:196663377:C:A 1.3870 Enhancer Elite Distance chr3:196662637-196663388
POLR2ANFICZNF592KLF16SMARCC2ATF7NCOR1CBFA2T3TAL1CBX3TEAD4STAT5AGATA1TCF12NCOA1PMLNBNDPF2RNF2LEF1ARID1BSMARCA4HES1GMEB1GATAD2BCBFA2T2L3MBTL2HDAC2HDAC1ZNF318TRIM24KDM1AMTA1ZEB2ARID3ACREMARNTSOX6EP300PKNOX1TRIM28ESRRAC11orf30SMARCE1BACH1AFF1GATA2EHMT2MAFFMEIS2ZNF316MAFKCTBP1NFE2IRF1ESR1
GH03J196665 - 3:196665270:G:A 1.5569 Enhancer - Distance chr3:196665082-196665525
ZBTB33MNTMEIS2PKNOX1ZBTB33
GH03J196666 - 3:196666148:A:G 1.5496 Enhancer Elite Distance chr3:196665722-196666899
ZBTB33ZNF316SIN3APOLR2ARBBP5ASH2LTCF7L2HDAC2TCF7XRCC5SOX6MLLT1CREMTAF7CBFA2T3TAF1IKZF1FOXA2CEBPBHNRNPLLBHLHE40TFAP4KDM1ARESTCREB1EP300JUNDSMARCA4FOSNANOGBACH1TCF12ZBTB33YY1CTCFZNF384CEBPB
GH03J196670 - 3:196670817:C:G 1.2520 Enhancer Elite Distance chr3:196670001-196671399
ATF3ATF4NR2F2EP300BCORZNF316NFE2
GH03J196676 - 3:196678237:A:T 1.5233 Enhancer - Distance chr3:196676721-196678728
ZEB2FOXA1
GH03J196684 - 3:196685615:C:T 1.1177 Enhancer Elite eQTLs,Distance chr3:196684550-196686253
CTCFEP400BCORZNF592KLF5RBM25CTBP1MNTZNF24E2F1SKILHDAC1SMC3ZNF207GATA3ZSCAN29BRD9NCOA1RAD21ELF1HMBOX1E2F8NBNSTAT5AGATAD2BCC2D1APOLR2AESRRAMYCZNF444ZNF217NFATC1MTA3L3MBTL2CBX3RESTMAXARID2TRIM22CBFBNRF1ZNF143DPF2ARNTRB1TBL1XR1MLLT1YY1TBX21NR2F2IKZF1MTA2NFATC3ATF2CREMTEAD4JUNBPKNOX1ARID3AMXI1FOXA1MEF2BEP300SOX6ETV6MEF2CNFE2ZBED1STAT1RELBRUNX3MAFFMEF2ABACH1JUNDIKZF2TCF12NFYBIRF4POU2F2ATF7MAFKE2F6NFICBCL11APAX5RXRAEGR1BHLHE40EEDZNF384
GH03J196686 - None 0.0000 Enhancer Elite Distance chr3:196686400-196686600
C11orf30
GH03J196687 - 3:196688484:G:C 0.4239 Enhancer Elite eQTLs,Distance chr3:196687800-196689200
ATF3HDAC1ETV6GATA2SP1POLR2AEP300EGR1STAT3FOSMAXSPI1CEBPBCTCFMYCL3MBTL2EBF1FOXA1SMARCA4
GH03J196689 - 3:196692115:A:T 1.1269 Enhancer Elite eQTLs,Distance chr3:196689600-196695599
ZNF316SPI1CTCFRAD21ZNF217ZNF444TRIM24YY1HDAC1EGR1MTA3TEAD4SRFHNRNPLYY1HNRNPUL1TRIM24HNRNPLATF7CDC5LTAF15PCBP1RUNX3MYCTEAD4
GH03J196706 - 3:196707134:G:A 1.3156 Enhancer - Distance chr3:196706210-196707250
CEBPBSTAT3EP300
GH03J196710 - 3:196710757:G:A 1.2647 Promoter/Enhancer Elite Distance chr3:196710750-196713700
ATF4RFX1MLLT1SMARCE1ZNF24L3MBTL2KDM1ABCORATF2E2F1MEIS2CTCFNBNMIER1MEF2BRAD21PKNOX1TRIM28NFRKBZMIZ1IKZF1BHLHE40TBPAFF1SMARCA4NFATC3MTA2GMEB1ATF7ZSCAN29STAT5APOLR2AMXI1HDAC2EBF1HNRNPLLTBX21MTA3IKZF2JUNBFOXK2TAF1MNTSKILCBFBEP300TRIM24DPF2LEF1GABPB1KDM5BZBTB33PYGO2RUNX3CREMNRF1BCL3ETV6HDAC1BATFJUNDRELBBCL11AEEDSUZ12SMARCC2SIN3ASOX6RBFOX2ARNTPRDM10PAX5NFICXRCC5ETS1SAP30KLF5POLR2GASH2LPHF8SREBF2RAD21CBX1ZBTB2RFX1PHF20FIP1L1E4F1TRIM22SMC3ZNF639PCBP1FUSBMI1ZNF143HNRNPKRBBP5EP400ZFXEGR1ELK1RNF2BHLHE40ZNF207AGO2CREB3L1DACH1PMLMYCBACH1E2F4STAT1TAL1IRF1TAF15MAXGATA1HCFC1MEIS2SIX5ETS1SKISAFBZHX1GATAD2BSPI1E2F8CTBP1ELF1UBTFTBL1XR1CHD1MAFKSP1TBPTFAP4DPF2YY1TCF12PBX3MTA1NFICKDM4ARB1NR3C1E2F6MTA3RESTGATA3SMARCA5TAF7SMC3GABPASMAD5ZNF24SRFSIN3BZNF592ZBTB7ANFXL1ZNF687ZSCAN29ZNF217SMARCE1ARID3AL3MBTL2GMEB1IKZF2EGR1HDAC1PHF20TBPKDM4ARUNX3RCOR1SIN3AZBTB40GATA3MEIS2FOXA2PKNOX1FOXA1KLF5MLLT1ZBTB33
GH03J196726 - 3:196727182:G:A 0.2221 Enhancer - eQTLs,Distance chr3:196726587-196727562
FOSJUNDPOLR2ACTCFZNF316CBX5TRIM28NR2F2FOSNR2F1GATA2NR2F6
GH03J196739 - 3:196740395:G:C 0.5337 Promoter/Enhancer Elite eQTLs chr3:196739129-196742631
MLLT1SPI1TBX21POLR2ATRIM22CREMCTCFZNF143PKNOX1E4F1NRF1SIX5ELF4ZEB2HCFC1EP300RAD21XRCC5JUNDETS1SP1IRF1IRF2MXI1MNTRBFOX2POU2F2ZNF217POLR2GSUZ12SIN3AIKZF1TAF1AFF1HDAC1STAT5AGABPB1YY1PRPF4ELF1CBX3RBM39ATF2RNF2MAXPCBP1FIP1L1MBD2NCOR1ZNF444RESTCBX5EGR1GABPAMYCHES1TBPMEF2BNFATC1BHLHE40GATA4ZNF687TCF12TBL1XR1EP400NR3C1SPI1CTBP1MITFUSF1PHF8NEUROD1NFRKBASH2LSMAD5HNRNPLLBCL3GATA3RUNX3FOXA1DPF2ZNF639PHF21AHNRNPKZFXSMARCA4GMEB1E2F6KDM5BPCBP2TAF7BRD4FUSCHD1RBM22GATAD2AAGO2GATAD2BRB1CBX1L3MBTL2SIN3BSMARCA5SMAD1SAP30UBTFKDM4AZNF592IKZF1ZNF207RBBP5SMC3KDM5AKLF5RNF2PRDM10TBPSKILSMARCE1ZSCAN29ELF1RESTZNF512BZNF316BCORZNF318PYGO2NCOR1MTA2ASH1LTAF1NCOA1ARID2MLLT1CLOCKMCM7YY1ZBTB40NFATC3NFICZNF579CTCFRAD21EP400RFX1ARNTFOSKDM1AMXI1CTCFTBX21PHF21ATBPATF7MAXFUSWRNIP1PAX8SIN3ANCOA6BHLHE40CHD1ZBTB40CREB1RESTC11orf30YY1TAF1GABPAMEIS2PKNOX1RXRANFE2RAD21ATF3ARID3AHNF4ANFE2L2HNF1ASP1ZNF316FOXA2GATA3MAFKPRPF4MLLT1ZBTB33BHLHE40ZBTB33CHAMP1
GH03J196773 - 3:196774038:A:C 0.9727 Enhancer Elite eQTLs chr3:196773800-196775299
FOXA2FOXA1FOXP1GATA3ZNF24GATA2JUNDYY1NCOR1ZBTB33ATF3RESTRAD51NR2C1ZNF316SP1RAD21MITFFOXA1LCORLFOSNR2F2RXRAFOXA2HNF4AMAFFHNF4GFOSL2C11orf30MEF2BMAFKNFE2L2USF1BHLHE40ZBTB40STAT3FOS
GH03J196778 - 3:196779282:A:G 0.6108 Enhancer - eQTLs chr3:196778176-196779781
BHLHE40SIN3AGATA3FOSJUNDCTCF
GH03J196787 - 3:196787765:A:G 1.4265 Enhancer - eQTLs chr3:196787559-196788912
ZNF512BSIN3ACTCFFOXA1MNTXRCC5ZNF217DPF2FOXA2RAD21FOXK2JUNDCTBP1ESR1GATA3MYCFOXP1SMC3MXI1TRIM28JUNDGATA2GATA3FOXA1CTCFRAD21
GH03J196790 - 3:196792362:C:T 1.4138 Enhancer Elite eQTLs chr3:196790018-196795156
CTCFZBTB33ZNF444SMARCA5TRIM22MAFKFOXA1TCF7MNTJUNDFOXA2FOSL2FOSGATA3ESR1FOXA1ZBTB33FOXA1RAD21MAXZBTB40CEBPBGATA3ESR1MAFKMAFFZBTB11POLR2AZNF444CLOCKEP300GABPAZNF507CREB1SMARCA5ZNF579ELF1SIN3ATCF12ZNF217MAFKC11orf30SP1MNTJUNDGATA2MAFFFOSL2RCOR1FOSMYCCEBPBNFE2L2ZHX2MBD2JUNZNF316DPF2TCF7L2CUX1ZNF24ZNF384RAD51FOXA1CTBP1NEUROD1SREBF1SMARCE1GATAD2BESR1ATF7BHLHE40FOXA2NFIBNCOA3IKZF1SMARCA5ZBTB33ESR1
GH03J196908 - 3:196908911:G:C 0.4515 Enhancer - eRNA_co-expression chr3:196908865-196909077
FOXA1
GH03J197057 - None 0.0000 Enhancer - eRNA_co-expression chr3:197057784-197057872 -