GWAS Annotated: POPDC2

Gene: popeye domain cAMP effector 2

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
POPDC2GH03J119497-3:119499786:C:T1.3388Promoter/Enhancer574EliteC-HiCchr3:119497378-119501067ENSR3_93QFLX, ENSR3_93QFM3, ENSR3_5334W5M, TIMMDC1_1
PKNOX1SAP30PHF8ZNF316MAFFKDM4AMTA3HDAC1ZNF579EZH2GABPB1KDM1AYY1BMI1ZFXBCORPOLR2ANFICMNTNBNL3MBTL2EP400KDM5BZBTB40KDM5ANR2C1CREB3L1ATF7NRF1TCF12TBX21CTBP1RBFOX2RESTSKILATF2ZNF24PRDM10MXI1KLF5BCL3POLR2GSIN3ACC2D1APHF20ZNF384CTCFE2F8NCOA1TRIM24AFF1MYBZNF687MBD2EP300GABPAMLLT1ZNF444FOSMYCE4F1MAXPKNOX1HCFC1ZNF217SIN3BPCBP1C11orf30ETS1TBL1XR1ZBTB33SMAD5ATF3HDAC2RELBNEUROD1ZBTB11ELF1ZNF143TBPELF4MTA2RUNX3POU2F2TAF1GMEB1BHLHE40SIX5IKZF1ASH2LRAD21SRFHNRNPLLRBM39NR2C2WRNIP1ASH1LNR3C1FOXK2NFE2ELK1NFYBFOSL2THAP1SP1TAF9BJUNDFOXA1HNRNPLNR2F1NR2F2CREMIRF1RFX1RBBP5CREB1RXRASPI1KDM4BESRRAZHX2TAF15HNF4GHNF4AETV4PMLIRF3HMBOX1SKIGATAD2BEGR1MGAIKZF2BRD4SOX6USF1DPF2GATA1NR2F6NCOR1SMC3NFATC3TRIM28TAF7RCOR1E2F1CEBPBIRF4MEF2AZSCAN29TCF7L2XRCC5BCL11ATBX3SMAD1ZNF207AGO2BACH1THRAU2AF1MTA1HNF1ASREBF1STAT1STAT3NFE2L2CHD4ZMYM3MLLT1BCORZNF384PAX5PRPF4E4F1IKZF1ZFXELF4MNTNR2F1IKZF2ZBTB40RAD51MITFBHLHE40GABPB1USF1ZBTB40GABPB1ZBTB11
POPDC2GH03J119570-3:119571839:T:A0.7673Enhancer350EliteC-HiCchr3:119570000-119571999ENSR3_93QGDX
NFICMTA2DPF2MEF2BRUNX3IKZF1POLR2AZNF143EBF1IRF4IKZF2ELF1SP1EP300PKNOX1SPI1MEIS2RELBEEDPAX8EP300TFAP4NR2F2
POPDC2GH03J119612-3:119616463:A:T0.7231Enhancer36-C-HiCchr3:119612367-119617120-
MEF2ARUNX3RUNX3ZNF316
POPDC2GH03J119618-3:119620016:CA:C0.4876Enhancer56-C-HiCchr3:119618765-119620444ENSR3_5335MS2
CTCFRESTRAD21POLR2AHMBOX1
POPDC2GH03J119620-3:119622181:AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGG:A1.3864Enhancer1-C-HiCchr3:119620557-119622234-
HMBOX1POLR2A
POPDC2GH03J119627-3:119626489:T:C0.0176Enhancer76EliteC-HiCchr3:119626333-119626547-
PKNOX1
POPDC2GH03J119626-3:119629283:G:C0.6945Enhancer406EliteC-HiCchr3:119626786-119631999ENSR3_93QH2H, ENSR3_5335P9Q, ENSR3_BTQ2N
ZNF592JUNBFOSIKZF2IKZF1KDM4AEBF1CTCFRELBZNF687DPF2BCL3PAX5SPI1BATFNBNPOLR2AEP300NFICGATAD2BTAF1EEDMTA3YY1TBPTAF1MTA3TBX21IKZF2SMARCA5ZBED1MTA2ZNF592GATAD2BZNF687EBF1PAX5BATFARID3ARUNX3EEDPOLR2ANFICTCF7IKZF1EP300TBPCREMTAF1PKNOX1RELBPBX3BCL3POU2F2TCF12MEF2BRAD21EBF1ATF2NR2F2ZFXZNF687SPI1RUNX3SMARCA5RCOR1RAD21CTCFC11orf30ZNF316FOSHNF4AMAFFATF3MAFKPOLR2ANFE2L3MBTL2JUNDATF4NFE2L2NFRKBCEBPBEP300
POPDC2GH03J119635-3:119640000:C:T0.6819Enhancer484EliteDistancechr3:119635912-119640405ENSR3_93QH52, ENSR3_CFTJF, ENSR3_85HZ9X
POLR2ACTCFMYCGATA3RAD21GATA2EEDFOSZNF316MAFKC11orf30BACH1POLR2ASMARCA5RFX1ZNF592DPF2IKZF1TAF1ATF7PKNOX1EP300SIN3AFOSJUNDATF3SMARCE1CREMFOSL2ARNTZHX1ATF2YY1SOX6ZBED1STAT3JUNHDAC1NFE2SMARCA4RCOR1MAFFHDAC3NCOR1GATA3RNF2TBL1XR1NFICCBFA2T3MEIS2ZNF318ZNF384JUNBMEF2ABATFSMC3BRD4MXI1LEF1TEAD4GATA2ARID1BMEF2CESRRACBFBTBX21TAL1GATA1USF1EEDRESTSKILTRIM22IKZF2IRF1RAD21RUNX3EBF1CUX1HMBOX1BACH1KLF5BHLHE40MLLT1PAX5MTA3NFATC1POLR2GRBFOX2SIN3AHCFC1POLR2AGATAD2BHDAC6SMARCA5ZNF207ZNF143TRIM28ATF7RELBMLLT1NFRKBRNF2ZBTB33RB1SMAD5EP400L3MBTL2ZNF687ATF3SMAD1CBFBZSCAN29RAD51NRF1DPF2HMBOX1CTBP1NFICATF4PKNOX1NFATC3SMARCE1E4F1NBNHDAC2ARNTCTCFSKILTHRAFOXK2SP1MTA2HDAC3RESTTAF1AFF1NR2F1NCOA1MITFGATA3IKZF1YY1BRD9ESRRANCOR1MNTBMI1CREB1BHLHE40BACH1ZNF507ZEB2ETS1FOSSMARCA4NEUROD1CBFA2T2POU2F2EBF1MGATBPEP300RAD21MTA1ETV6CREMARID1BTEAD4C11orf30JUNDRUNX3IKZF2HDAC1ZNF592ATF2ZNF318TBL1XR1TBX21ZNF24CEBPBUSF1GATA2MYCCHD1EEDMEF2BNFE2JUNMXI1TCF12ELF1SOX6RCOR1MAXHES1TRIM24ZNF316MEIS2ARID3ABCL3USF2CUX1STAT3LEF1PAX5GATA1JUNBIRF4E2F1MAFKSTAT5ANFATC1MAFFSRFPBX3MEF2CZBED1SPI1BATFTRIM22BCL11AMEF2ANFATC1YY1JUNBETV6FOSBMI1BCL3JUNDCREMIRF4BCL11AMEF2CSRFBATFPBX3ESRRAGATA2ARID3ARUNX3GATA3FOXM1MXI1YY1RCOR1
POPDC2GH03J119642-3:119644070:T:TA0.5887Enhancer264EliteDistancechr3:119642551-119644797ENSR3_BTQ4J
NRF1JUNBEEDZEB2MNTCTBP1POLR2ARNF2MYCMGAZNF687L3MBTL2MAXUSF1MITFCTCFJUNDFOSL2FOSRAD21CEBPB
POPDC2GH03J119644-3:119645304:C:T0.0287Enhancer36-Distancechr3:119644937-119645423-
ZNF316MAFKPOLR2A
POPDC2GH03J119645-3:119646013:C:T0.0355Enhancer202EliteDistancechr3:119645933-119646083-
HNF4AZBTB33YY1ASH2LSKIEHMT2RESTRXRAKDM1AMAXJUNDRAD21SP1EGR1HNF4GFOXA1ATF3FOXA2
POPDC2GH03J119646-3:119646849:G:A0.6057Enhancer125EliteeQTLs,Distancechr3:119646749-119648400ENSR3_93QH87, ENSR3_85HZGQ
POLR2AEP300EP300
POPDC2GH03J119649-3:119650292:G:A0.2794Enhancer172EliteDistancechr3:119649986-119650358ENSR3_85HZHT
HDAC1E2F1RAD21
POPDC2GH03J119652-3:119651363:G:GT0.0618Enhancer128EliteDistancechr3:119651067-119651376-
ZFXZMYM3
POPDC2GH03J119651-3:119652778:T:A0.2734Enhancer98EliteDistancechr3:119651737-119652872ENSR3_BTQ5S
POLR2ANR2F2EP300CTCFEP300
POPDC2GH03J119654-3:119653317:A:G0.4239Enhancer1-Distancechr3:119653179-119653499--
POPDC2GH03J119653-3:119654230:A:G0.4923Enhancer1-Distancechr3:119653654-119655195-
SPI1
POPDC2GH03J119655-3:119655975:A:T0.0353Enhancer1-Distancechr3:119655441-119656140-
USF1
POPDC2GH03J119656-3:119657831:T:C0.6566Enhancer105-eQTLs,Distancechr3:119656193-119658738ENSR3_5335WKH
TAF1MXI1ZFP91DPF2ZNF316C11orf30ZNF384NFE2CTCFRAD21SPI1
POPDC2GH03J119659-3:119660130:G:A0.9992Promoter/Enhancer415EliteeQTLs,Distancechr3:119659127-119663853ENSR3_93QHD4, ENSR3_BTQ7C, ENSR3_5335XBB, ENSR3_93QHF2, POPDC2_1
POLR2APOLR2AMXI1TAF1SIN3AIKZF1YY1RESTEP300RAD21RCOR1GATA2CTCFIKZF1RAD21ATF7JUNBCREMPOLR2ARESTTCF12SIN3ATAF1JUNDRAD21RCOR1ZMYM3RBM25
POPDC2GH03J119664-3:119664460:GAAGA:G0.5544Enhancer282EliteeQTLs,Distancechr3:119663999-119665800ENSR3_93QHF2, ENSR3_93QHF6, ENSR3_93QHFC
JUNDEP300YY1RAD51NFICSKILZNF687EEDRUNX3MXI1TBX21IKZF1TRIM22MEF2ASTAT5AMEF2BEP300RELBIKZF2SPI1POU2F2L3MBTL2HDAC1CTBP1E2F1ZBTB40MLLT1ZEB2HMBOX1POLR2AATF7NFATC1RESTTEAD4EP300JUNDCREMZMIZ1GABPB1
POPDC2GH03J119675-3:119678127:C:A0.4975Promoter/Enhancer627EliteeQTLs,Distancechr3:119675593-119678214ENSR3_53362QJ, ENSR3_BTQ9G, POPDC2_2, COX17_1
GATA3MXI1MGAPOLR2AUSF1SMC3MEIS2EP300CTCFPAX8BACH1ASH2LSMAD5POLR2ARFX1FOXA2FOXA1NR2C1KDM5ARBM39DPF2KDM4BHNRNPLLKDM4AGMEB1EHMT2ZFXPRPF4ZNF830KDM1AHNRNPLRBFOX2ZNF687CTBP1MNTTBL1XR1SREBF1MBD2CBX3ETV4TAF1EP400NR2C2MYCXRCC5SIN3AGABPB1POLR2GNCOR1ESRRACREMZNF444YY1MAXNR2F2HCFC1MTA2MGAHNF4GZBTB40EP300TRIM24PHF8ZNF592NR2F6GABPANRF1NR2F1HDAC2HNF4AGATAD2BATF7CREB3L1ETS1NBNMTA3CTCFC11orf30PCBP1PHF20HNRNPKRBBP5E4F1EEDRB1UBTFCBX1MXI1SIN3BRCOR1TRIM22HDAC1RBM34KAT8RELBRESTL3MBTL2SMAD5ATF3ZNF207E2F7GATA3SP1ELF1TCF12LCORLE2F8NR3C1ELF4ETV6SREBF2CREB1NFIBZHX2NFYBZNF217PKNOX1ELK1ZNF639KLF5MYBL2WRNIP1FOXM1EGR1RAD21E2F1FOXK2RNF2IKZF1E2F4ZEB1JUNDRFX1TBPE2F6TEAD4ZBTB33MEIS2PBX3STAT1ZEB2NFRKBIRF3ZBTB2SRFCC2D1APCBP1CUX1NFICFOXA1TFAP4FOXA2HNF4GZNF574ZNF143ZBED1TBX21SMAD1MLLT1RUNX3RXRAJUNBPOU2F2IKZF2CHAMP1CEBPBARID3ABATFPAX8ZNF592