GWAS Annotated Elements: PTPRD

Gene: protein tyrosine phosphatase receptor type D

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH09J008337 - 9:8337939:A:G 0.7563 Enhancer - - chr9:8337613-8338770
MNTMAXCTCFSP1RXRANR2F2JUNDATF3RAD21HNF4A
GH09J008364 - 9:8365758:T:C 1.1452 Enhancer Elite - chr9:8364496-8367464
JUNDZNF384SPI1FOSCTCFFOSGATA2JUNDRAD21
GH09J008492 - None 0.0000 Enhancer - - chr9:8492100-8492250
YY1
GH09J008495 - None 0.0000 Enhancer - - chr9:8495778-8496144
MITFUSF2RAD51
GH09J008523 - None 0.0000 Enhancer - - chr9:8523419-8523650 -
GH09J008526 - None 0.0000 Enhancer - - chr9:8526544-8526809 -
GH09J008555 - 9:8556190:T:G 1.9719 Enhancer - - chr9:8555571-8556530
HNF4ARESTSP1RXRAJUNDATF3RAD21STAT3FOS
GH09J008576 - 9:8576853:T:C 0.4476 Enhancer - - chr9:8576628-8576984 -
GH09J008600 - None 0.0000 Enhancer - - chr9:8600060-8600210
CTCFZNF143RAD21
GH09J008628 - 9:8628670:A:T 0.8120 Enhancer - - chr9:8628076-8629040
MXI1EP300SMC3RAD21FOS
GH09J008646 - 9:8646069:A:AAG 0.8808 Enhancer - - chr9:8646067-8650346
IKZF2IKZF1SPI1RUNX3
GH09J008651 - 9:8651466:T:A 0.3552 Enhancer Elite - chr9:8651079-8652796
SMARCA4
GH09J008653 - 9:8656635:G:T 0.9578 Enhancer - - chr9:8653830-8657109
SP1RAD21HNF4AATF3SPI1CEBPBYY1RXRA
GH09J008660 - 9:8660693:C:G 1.1222 Enhancer Elite - chr9:8660434-8660998
TRIM28ZNF263SP1NR2F2RAD21ATF3RXRAHNF4GJUNDYY1FOXA2HNF4ASPI1EP300
GH09J008664 - 9:8664838:G:T 1.3444 Enhancer - - chr9:8664244-8667100 -
GH09J008667 - 9:8669273:C:T 0.9867 Enhancer - - chr9:8667981-8670350
SMARCA4
GH09J008670 - 9:8670737:G:T 0.9896 Enhancer - - chr9:8670423-8672845
ATF2
GH09J008673 - 9:8673450:G:A 0.5284 Enhancer - - chr9:8673224-8673587 -
GH09J008675 - 9:8675542:A:C 0.4904 Enhancer - - chr9:8675419-8675557 -
GH09J008676 - 9:8676208:C:T 0.5551 Enhancer - - chr9:8676176-8676347 -
GH09J008677 - 9:8679373:G:A 0.7836 Enhancer - - chr9:8676828-8680138 -
GH09J008680 - 9:8680955:T:C 0.9108 Enhancer - - chr9:8680486-8681712
SMARCA4ATF2ATF7
GH09J008682 - 9:8684624:A:G 1.0391 Enhancer - - chr9:8682204-8686623
NANOGSMARCA4FOSSPI1
GH09J008690 - 9:8695013:G:A 1.2194 Enhancer - - chr9:8690542-8697427
RAD21CTCFSRFRAD21EP300TAF1USF1EGR1GATA3
GH09J008698 - 9:8698739:C:G 0.1911 Enhancer Elite - chr9:8698083-8698880
SMARCA4
GH09J008699 - 9:8699997:C:T 0.5213 Enhancer - - chr9:8699785-8700950 -
GH09J008701 - 9:8701701:G:C 0.8711 Enhancer - - chr9:8701066-8702697 -
GH09J008702 - 9:8703733:C:T 0.8652 Enhancer - - chr9:8702808-8704798 -
GH09J008704 - 9:8707450:C:T 1.4071 Enhancer - - chr9:8704923-8708414
REST
GH09J008711 - 9:8711925:C:T 0.4053 Enhancer - - chr9:8711363-8712798
EP300
GH09J008717 - 9:8718572:T:C 0.8615 Enhancer Elite - chr9:8717983-8719013
EBF1FOS
GH09J008719 - 9:8719549:A:G 0.4231 Enhancer Elite - chr9:8719420-8720453
GATA3GATA2
GH09J008721 - 9:8724447:C:A 0.9671 Enhancer - - chr9:8721365-8726373
TRIM28ATF4ATF2PKNOX1CTCFTRIM28CREB1
GH09J008726 - 9:8727174:C:T 0.7096 Enhancer - - chr9:8726809-8727855
ATF2
GH09J008728 - 9:8729593:G:C 0.2688 Enhancer - - chr9:8728974-8730052 -
GH09J008732 - 9:8735139:T:G 1.1394 Promoter/Enhancer Elite - chr9:8732651-8735509
SMARCA4EP300GATA2ZNF263TRIM28TAF1POLR2AMXI1ASH2LRAD21SMC3YY1SMARCA4EP300SPI1NR2F2EP300JUNDSP1REST
GH09J008736 - 9:8738089:A:T 1.2704 Enhancer - - chr9:8736480-8738586 -
GH09J008744 - 9:8745600:T:C 1.0607 Enhancer - - chr9:8744656-8745828
SP1
GH09J008750 - 9:8751486:A:C 1.1688 Enhancer - - chr9:8750243-8752912 -
GH09J008773 - 9:8773629:A:C 0.3923 Enhancer - - chr9:8773470-8773777 -
GH09J008784 - 9:8784855:T:C 0.7432 Enhancer - - chr9:8784736-8786264
SMARCA4
GH09J008799 - 9:8800812:G:A 2.6024 Enhancer - - chr9:8799820-8800817 -
GH09J008816 - 9:8816556:T:G 0.0787 Enhancer - - chr9:8816460-8816610
MXI1RAD21SMC3EP300
GH09J008825 - 9:8825715:T:C 0.7308 Enhancer - - chr9:8825640-8825890
YY1
GH09J008830 - 9:8832815:T:A 0.8039 Enhancer - - chr9:8830120-8833521
FOXA2SMARCA4SMARCA4ATF4
GH09J008840 - 9:8848557:C:G 1.3170 Enhancer - - chr9:8840031-8850201
MAFKCTCFGATA2ZEB1GATA3RCOR1GATA2SMARCA4ATF2ATF7
GH09J008850 - 9:8850764:T:C 0.8947 Enhancer - - chr9:8850420-8851896
SMARCA4
GH09J008851 - 9:8854123:TAA:T 0.6532 Enhancer - - chr9:8851941-8854415
YY1EP300
GH09J008856 - 9:8859515:C:T 1.5588 Promoter/Enhancer Elite - chr9:8856600-8860093
HNF4APOLR2ACBX2SIN3ACHD1RAD21HNF4ACTCFEZH2KDM4AYY1TAF1ASH2LPHF8RBBP5SUZ12ASH2LPOLR2AYY1ZNF263ZNF444TAF1SMARCA4ASH2LEP300TAF7MXI1CREB1ATF2ATF7JUNDSMARCA4SMC3SMARCA4ZNF263
GH09J008865 - None 0.0000 Enhancer Elite - chr9:8864020-8864170
STAT3CEBPBFOS
GH09J008864 - None 0.0000 Enhancer Elite - chr9:8864228-8864829
FOS
GH09J008867 - None 0.0000 Enhancer Elite - chr9:8867275-8867393 -
GH09J008868 - 9:8873805:T:C 1.2837 Enhancer - - chr9:8868441-8873836
SP1SP1MAXRESTHNF4AFOXA2FOXA1RXRAYY1RAD21CTCFZBTB33ATF3GABPACTCF
GH09J008877 - 9:8878525:T:G 1.2067 Enhancer - - chr9:8877214-8880601 -
GH09J008883 - 9:8883431:G:A 0.4402 Enhancer - - chr9:8883117-8883884
CTCF
GH09J008888 - None 0.0000 Enhancer - - chr9:8888760-8888790 -
GH09J008891 - 9:8892104:C:T 0.3852 Enhancer - - chr9:8891582-8892463
MAFKMAFF
GH09J008894 - 9:8894298:T:C 1.3679 Enhancer - - chr9:8894159-8897052
CTCFRAD21TRIM22SMC3ZNF143
GH09J008925 - 9:8925837:T:C 3.5279 Enhancer - - chr9:8925553-8925879 -
GH09J008960 - 9:8960329:A:G 2.9672 Enhancer - - chr9:8960214-8962645
YY1ZBTB33MAXEGR1ATF3JUNDSP1HNF4AHNF4GRXRAHDAC1SP1NCOR1RXRAHNF4AKDM1AASH2LCREMFOXA1FOXP1FOXA2ARID3ASKIRESTNR2F6CREB1GABPAEP300JUNDATF7HNF4GATF3LCORLTBL1XR1ETS1HDAC2EGR1NR2F2RAD21NRF1CTCFCEBPBPOLR2ATBPZBTB33TBX3MNTSMC3MAXYY1RNF2SMARCA4
GH09J009442 - 9:9442184:G:A 0.9721 Promoter - Physical Overlap (TSS) chr9:9441999-9442401 -
GH09J009521 - None 0.0000 Enhancer - - chr9:9521240-9521390 -
GH09J009522 - None 0.0000 Enhancer - - chr9:9521540-9521690
CTCF
GH09J009555 - 9:9555309:G:A 0.6032 Enhancer - - chr9:9555186-9555782 -
GH09J009556 - 9:9558922:C:T 0.9505 Enhancer Elite - chr9:9556283-9559328
ASH2LPOLR2ARBBP5TAF1YY1RESTTCF12EP300HDAC2JUNDCHD7MAFKSP1RAD21NANOGBCL11ANFICNFIB
GH09J009612 - None 0.0000 Enhancer Elite - chr9:9612340-9612490
POLR2ASMARCA4TCF12SPI1
GH09J009758 - 9:9758148:CA:C 0.3366 Enhancer - Distance chr9:9758145-9758159 -
GH09J009842 - 9:9842391:C:T 1.1819 Enhancer - Distance chr9:9842302-9842691 -
GH09J009847 - 9:9847598:A:G 0.5511 Enhancer - Distance chr9:9847494-9848168 -
GH09J009855 - 9:9855408:C:A 0.4237 Enhancer - Distance chr9:9855280-9855430 -
GH09J009924 - 9:9924309:G:A 0.0164 Enhancer Elite Distance chr9:9924221-9924924 -
GH09J009997 - 9:9998980:C:T 0.9691 Enhancer Elite Distance chr9:9997709-9999734
YY1CTCFFOXA1FOXA2ZNF143RAD21KDM1AHDAC2ETV6GATA2SPI1CREB1
GH09J010000 - 9:10000931:C:T 0.5654 Enhancer - Distance chr9:10000349-10001312 -
GH09J010001 - 9:10001424:A:G 0.0306 Enhancer - Distance chr9:10001420-10001430 -
GH09J010008 - 9:10008622:A:G 0.5464 Enhancer - Distance chr9:10008049-10008797
HDAC2NANOGSMARCA4TCF12
GH09J010027 - None 0.0000 Enhancer - Distance chr9:10027809-10028140 -
GH09J010058 - 9:10059212:A:T 0.7124 Enhancer - Distance chr9:10058482-10059810
EP300FOXA2FOSCEBPBSMARCA4
GH09J010094 - 9:10094520:G:GT 0.7549 Enhancer - Distance chr9:10094484-10094558 -
GH09J010208 - 9:10208117:T:C 1.0465 Enhancer - Distance chr9:10208001-10208799
EZH2POLR2ADPF2MTA2TBX21YY1SPI1ARID3A
GH09J010264 - 9:10264852:G:A 1.4705 Enhancer - Distance chr9:10264619-10266203
GATA2FOSPKNOX1MNT
GH09J010446 - 9:10446298:A:G 0.1078 Enhancer - eRNA_co-expression,Distance chr9:10446076-10446442 -
GH09J010509 - None 0.0000 Enhancer - eRNA_co-expression,Distance chr9:10509838-10510073 -
GH09J010514 - None 0.0000 Enhancer - eRNA_co-expression,Distance chr9:10514993-10514999 -
GH09J010554 - 9:10554494:T:C 1.5250 Enhancer - eRNA_co-expression,Distance chr9:10554297-10554680 -
GH09J010561 - 9:10561884:A:T 1.4952 Enhancer - Distance chr9:10561752-10563853
ATF7ATF2CREB1FOSUSF1STAT3FOSUSF1
GH09J010563 - None 0.0000 Enhancer - eRNA_co-expression,Distance chr9:10563879-10564197 -
GH09J010612 - 9:10612930:G:C 2.2530 Promoter/Enhancer Elite eQTLs,Distance chr9:10612400-10613201
EZH2ZNF263ASH2LRAD21PHF8POLR2AZNF143SMC3CTCFKDM4ATBPSUZ12RBBP5BACH1MYCEP300HDAC2NANOGEZH2