GWAS Annotated: PTPRG

Gene: protein tyrosine phosphatase receptor type G

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
PTPRGGH03J060672-3:60673269:G:A0.6259Enhancer99-TF_co-expressionchr3:60672655-60673475--
PTPRGGH03J061521-None0.0000Enhancer145-C-HiC,Distancechr3:61521367-61521576-
PKNOX1CBX5DPF2MTA2NFATC3IKZF2BMI1TBX21EEDRXRASP1ATF7HNF4AARID3ATBPBHLHE40CREMBCL11ARUNX3RELBRFX5JUNDNFYBETV6SKILNFYAPOU2F2BATFJUNBIKZF1EP300SPI1TCF7RCOR1
PTPRGGH03J061536-3:61538083:T:G1.0606Enhancer91-Distancechr3:61536951-61538260ENSR3_9WFH2
TRIM28ETV4YY1NANOG
PTPRGGH03J061558-3:61559347:A:G0.6559Promoter/Enhancer631EliteTF_co-expression,Distancechr3:61558987-61565256ENSR3_BG7T7, ENSR3_BG7TG, ENSR3_5JGXRD, ENSR3_5JGZDG, PTPRG_3, PTPRG_1, PTPRG_2
CTCFSMC3RAD21EP300SP1ETS1ASH2LNANOGKDM1ACHD4ZNF217DPF2MTA2NFATC3CTCFBMI1MLLT1HNF1AKDM4AJUNDARNTGATA3GATAD2BZNF207KDM5ATAF7BACH1GATA2POLR2APOLR2GEP300ZNF263TBPZBTB40RESTRAD21GABPAHDAC2ELF1AGO1SIN3AGATA4MAXTAF1TAF15BHLHE40RBFOX2MYCETS1IKZF1STAT3FOSNANOGYY1NBNIKZF2KDM1ASPI1ETV4NCOR1PCBP1SMC3RCOR1MXI1ZNF444ZBTB33RBM22AGO2HNRNPLLCREMPHF8ATF7RXRASOX13NR2F6EGR1L3MBTL2XRCC5ZNF143PRPF4SKISP1RELBZSCAN29ARID3ACEBPBTCF12HNF4GSUZ12PTBP1CHD1TBX3ZBTB7AZNF384HNF4AHDAC1RBBP5TBPRBM39GATAD2BHNRNPLLTRIM22SMC3GATA4ZNF687HDAC6TCF7L2DPF2MNTEGR1YY1FUSZNF24ZNF263BACH1KDM5ASP1TCF12CTCFJUNDGABPATFAP4STAT3MYCELF1ETV4RNF2HNRNPKBHLHE40TBPRB1IKZF2PCBP1USF2EP300RESTUSF1TAF7SAP30L3MBTL2ZFXTAF15NFXL1RBM39SUZ12CHD1KDM4AASH2LHDAC2SIN3AHNRNPLLPHF8POLR2AXRCC5MLLT1TAF15SIN3AASH2LRAD21RBBP5TAF1HNRNPLIKZF1HNF4AHNRNPLLAGO2TRIM22TFAP4SMARCA4EBF1KDM4ATAF1IKZF1CTCFSUZ12POLR2AZNF263SIN3AASH2LRAD21SMC3TRIM22MXI1HNF4AEP300IKZF2DPF2GABPASMARCA5AGO2TAF15ZNF143RBFOX2ZNF217RB1BACH1SMARCA4HDAC2JUNDBHLHE40USF1GATAD2BZBTB33PAX8
PTPRGGH03J061565-3:61566007:G:A0.1931Enhancer36-Distancechr3:61565697-61566620-
MYCJUNDFOSRAD21IKZF2LEF1
PTPRGGH03J061571-3:61571559:A:G0.6270Enhancer300EliteDistancechr3:61571557-61572228ENSR3_BG7WZ
POLR2AFOSMAFKJUNDMYCSTAT3EP300CEBPBPKNOX1
PTPRGGH03J061573-3:61576004:A:G1.0366Enhancer253EliteDistancechr3:61573919-61576516ENSR3_BG7XF
POLR2ATRIM28YY1JUNDSTAT3FOSMYCPOLR2AZBTB33RAD21
PTPRGGH03J061589-3:61590104:G:T0.6358Enhancer144EliteC-HiC,Distancechr3:61589540-61590155ENSR3_9WG37
C11orf30MAXZNF316JUNDMYCBACH1USF1USF2NFE2MAFKFOSCEBPBNFE2L2
PTPRGGH03J061593-3:61593415:AAC:A0.7410Enhancer112EliteeRNA_co-expression,Distancechr3:61593397-61593478--
PTPRGGH03J061594-3:61595090:C:T0.7253Enhancer98EliteDistancechr3:61594600-61595643ENSR3_BG83C
HNF4AEP300CEBPB
PTPRGGH03J061616-3:61617504:C:A0.5376Enhancer99-Distancechr3:61616838-61617901ENSR3_9WGC3
YY1SP1JUNDRXRAATF3HNF4ASMC3EP300RAD21PKNOX1MXI1
PTPRGGH03J061626-3:61626742:G:A1.1150Enhancer263EliteDistancechr3:61626433-61628309ENSR3_9WGG6
HNF4AEHMT2ZBTB33ETV6NR2F2YY1HNRNPUL1ATF3ARID3ARAD21HNF1AFOXA2TCF12EGR1JUNDEP300ZNF263NR2F6RXRAHNF4GFOXA1HNF4ACREMSP1RCOR1TCF7ETS1ESR1HDAC2SIN3ANFE2L2LCORLKDM1AGATA2BHLHE40MAFKFOSCTBP1NFXL1TBX3CEBPBPKNOX1NBN
PTPRGGH03J061628-None0.0000Enhancer56-Distancechr3:61628524-61629268-
NBN
PTPRGGH03J061629-3:61630625:A:T1.0946Enhancer222EliteDistancechr3:61629473-61631276ENSR3_BG88G
ETV6PKNOX1TBX21EP300CTCFCEBPBJUNDBHLHE40NFXL1ZBTB33ZBTB40RELBTBX21MEF2ARUNX3
PTPRGGH03J061634-3:61634792:T:C0.3421Enhancer275EliteDistancechr3:61634786-61634936ENSR3_9WGJ6
ZNF263SP1TRIM28ARID3AJUNDETV6NFXL1HNF4AEP300RAD21FOXA1FOXA2TCF7PKNOX1TBX3CTBP1RXRA
PTPRGGH03J061636-3:61638274:G:GT0.4589Enhancer250EliteDistancechr3:61636891-61638392ENSR3_BG89H
TRIM28MLLT1IKZF1BMI1MEF2BMAXNFICSKILZBED1ZNF217ATF2RESTARNTIKZF2RXRARELBATF7NBNNFATC3HNF4ATBL1XR1GATAD2BELF1TRIM22YY1CREMEP300DPF2POLR2ARCOR1EEDMTA2SMARCA5IRF4BACH1RUNX3BHLHE40TBX21BCL11ABATFPAX5ZNF263TCF12RAD21SPI1ETV6SP1FOXA2NFXL1EBF1
PTPRGGH03J061644-3:61645337:C:T0.2293Enhancer218EliteDistancechr3:61644666-61645899ENSR3_9WGM7
ETV6TCF12FOXA2FOXA1TBX3EP300TCF7SP1CREMSKIARID3AKDM1ATFAP4TRIM28RBM22CHD4RXRANR3C1USF2NFYBMAXUSF1
PTPRGGH03J061646-3:61646703:T:C1.0322Enhancer63EliteDistancechr3:61646148-61647587-
POLR2A
PTPRGGH03J061649-3:61649920:C:T0.0575Enhancer206-TF_co-expression,Distancechr3:61649588-61650952ENSR3_BG8CC
ZNF263PKNOX1ZNF507ZNF217SMARCE1ZNF24RAD21FOSEP300BHLHE40ZBTB40COPS2NFXL1LEF1ZNF579FOXK2FOXM1FOXA1ARNTCTBP1NFE2L2ZNF384PKNOX1EP300
PTPRGGH03J061655-None0.0000Enhancer71-Distancechr3:61655086-61655236ENSR3_9WGQ2
CTCFFOSL2FOSETV6JUND
PTPRGGH03J061663-3:61663875:C:G0.5076Enhancer271EliteDistancechr3:61663452-61664816ENSR3_BG8FB
BHLHE40TRIM28IKZF1TCF12TAF1LEF1FOSL2SIN3AJUNDFOSARNTESR1RAD21NR3C1STAT3CTBP1JUNMYCNFXL1PKNOX1ESR1
PTPRGGH03J061666-3:61666289:C:T0.5443Enhancer121-Distancechr3:61666236-61668171ENSR3_83RXPG, ENSR3_83RXPR, ENSR3_83RXPZ, ENSR3_83RXQH
ZNF217NBNFOSTRIM22SMARCA5ZNF579SMARCA4NBNNFXL1YY1FOXA1ZBTB40MAXFOXA2RAD21HNF4ASP1TCF12RXRAZNF687
PTPRGGH03J061674-3:61674895:T:G0.2587Enhancer36-Distancechr3:61674254-61675099-
EP300ZNF574COPS2
PTPRGGH03J061682-3:61684238:A:G0.1601Enhancer272EliteDistancechr3:61682181-61684858ENSR3_BG8J3, ENSR3_9WH3J
COPS2MNTRELBIKZF1NFATC3JUNDEP300MTA2IKZF2BMI1ATF7NBNDPF2CREB1FOSTBX21MYCFOSZNF579JUNDPKNOX1STAT3SMARCA4POLR2AEP300NR3C1SMARCA5CTCFRAD21EP300POLR2AZNF579SMARCA5SMARCE1ZNF507
PTPRGGH03J061685-3:61685946:T:C0.2822Enhancer189-Distancechr3:61685766-61689684ENSR3_83RZ5T, ENSR3_5JHQ5R, ENSR3_9WH44, ENSR3_BG8JT
CTCFPOLR2ASIX4STAT3ZNF263CTCFUSF1PKNOX1ZNF217SP1STAT3RXRARAD21JUNDZNF24ATF3HNF4AMYCNR3C1GATAD2BFOSZNF574ZBTB33CEBPBSMARCE1FOSL2NFXL1NFRKBNBNHNF1AZKSCAN1FOXA1CTCFNFXL1CHD1SMARCA5ASH2LSIN3ASMC3SP1EZH2TCF12YY1HDAC2SMARCA4EP300ETS1TBPNANOGRAD21BRCA1ZNF217CTCFMAFFMAFKUSF1NR2F2POLR2AZNF579
PTPRGGH03J061693-3:61693338:T:C0.1138Enhancer36-Distancechr3:61693301-61693841-
MNTTRIM22PAX8ZNF217
PTPRGGH03J061696-3:61696709:C:G0.3191Enhancer36-Distancechr3:61696673-61697751-
NFXL1ZNF507
PTPRGGH03J061698-None0.0000Enhancer133EliteDistancechr3:61698426-61698576-
ZBTB40GATA3ZNF574ELF1SMARCA5NFRKBZNF24SMARCE1FOXA2TRIM22
PTPRGGH03J061699-3:61702040:G:A0.6473Enhancer195EliteDistancechr3:61699039-61702330ENSR3_9WH7X, ENSR3_83RZGP
NFXL1HDAC2EP300RAD51MXI1TAF1NANOGCHD7SP1BCL11AETV6SMARCA4FOSEBF1BHLHE40RAD51USF2MITFUSF1KDM1A
PTPRGGH03J061702-3:61702703:A:G0.4060Enhancer63EliteDistancechr3:61702586-61702736ENSR3_83RZHJ
NFXL1
PTPRGGH03J061703-3:61705511:G:GA0.6092Enhancer144EliteDistancechr3:61703494-61705556ENSR3_9WH9G
HNF4ATCF12SIN3AIKZF1RESTATF2
PTPRGGH03J061707-3:61709611:C:T1.0015Enhancer161EliteDistancechr3:61707327-61710460-
CTCFHDAC2NFXL1KDM1AEP300STAT3MYCFOS
PTPRGGH03J061725-3:61726369:T:C0.0708Enhancer196-TF_co-expression,Distancechr3:61725355-61726812ENSR3_BG8Q9
MLLT1ETV6ZNF384SIX4MNTTRIM22ZNF217ASH2LKDM1ASKIRAD21ATF7CREMSMARCA5NR2F2NCOR1NR2F6TBX21ARID3AJUNDHNF4GRESTMLLT1HDAC2EP300RXRAMAFFMAFKELF1PKNOX1FOXK2FOXA2FOXA1ZBTB7ATCF7COPS2
PTPRGGH03J061728-3:61730869:G:C0.7772Enhancer233EliteDistancechr3:61728866-61731197ENSR3_9WHJQ
MYCNBNSIX4HNF4GZBTB33RAD21GABPARESTRXRACREMMAXHNF4AYY1JUNDNR2F2SP1FOXA1ETV6FOXA2EP300HDAC2ATF3SMARCE1SMARCA4MYCELF1MAFKETV6PKNOX1
PTPRGGH03J061742-3:61742736:C:T0.2322Enhancer1-Distancechr3:61742601-61743000-
HNRNPLLZBTB33
PTPRGGH03J061783-3:61784841:C:T0.8725Enhancer105-Distancechr3:61783790-61785096ENSR3_BG93P
TRIM22ZNF574ZNF507MTA2DPF2FOSBATFJUNDSTAT3GATAD2BEP300NFXL1ZBTB40MLLT1
PTPRGGH03J061807-3:61808303:G:C0.3816Enhancer265EliteDistancechr3:61807955-61812191ENSR3_C85L4
ZNF579TRIM28MXI1GATA2SMARCE1EP300RCOR1ZNF263SMARCA4JUNDGATA3ZNF217ZNF24BHLHE40ARNTZFXPOLR2AEP300NR2F2JUNDYY1MAXZBTB33RAD21RESTSP1ATF3EGR1RXRAHNF4GHNF4AGABPAZFXZNF217NFXL1MNTTRIM22NBNGATAD2BSP1HNF4ARAD21EP300ZBTB40ZFXZNF217GATA3NFICCTCFUSF1ZBTB40ZFXZNF579NFRKBGATA3GATA2RCOR1ZBTB40GATAD2BZNF24
PTPRGGH03J061821-None0.0000Enhancer211-Distancechr3:61821946-61822096ENSR3_BG996
ETV6TRIM28ZNF263FOXA2EP300PKNOX1ARNTCTCF
PTPRGGH03J061828-3:61828698:T:C0.1996Enhancer91-Distancechr3:61828600-61829000-
ZNF217FOXA2
PTPRGGH03J061829-None0.0000Enhancer121-Distancechr3:61829200-61829600ENSR3_BG9B9
ZNF217FOXA2PAX8SP1NFXL1NR2F2YY1RXRAHNF4ARAD21SMARCA4EP300CTCFFOS
PTPRGGH03J061842-3:61842848:A:C0.9761Enhancer56-eRNA_co-expression,Distancechr3:61842804-61843191-
NFXL1ZBTB40
PTPRGGH03J061847-3:61849659:A:G1.2458Enhancer232EliteTF_co-expression,Distancechr3:61847050-61849969ENSR3_BG9DX, ENSR3_BG9F3
YY1EP300NANOGZNF574EHMT2RAD21POLR2AKDM1AZNF217NCOR1MAXYY1ZBTB33HNF4AJUNDHDAC2ATF3SP1FOXA1RXRANR2F2HNF4GNR3C1FOSSTAT3RESTMNTNFXL1ZKSCAN1EP300POLR2ARXRASTAT3NR2F2RAD21GATA2FOSZNF217ZNF574COPS2PAX8NBN
PTPRGGH03J061871-3:61871183:A:G1.5919Enhancer143-Distancechr3:61871052-61872506-
ATF7CTBP1MAFKNEUROD1NCOA3PAX8MAFKSMARCA5SIN3AMYCUSF2TCF12USF1
PTPRGGH03J061873-3:61874515:C:CT0.5948Enhancer215EliteDistancechr3:61873761-61876251ENSR3_9WK4N, ENSR3_75M8DZ
SREBF1JUNRFX5HSF1ESRRASP1ZFXSIN3AETS1NANOGEP300CTCFPOLR2AATF2ATF7JUNDTAF1CREB1NBNZNF574ATF3JUNSP1RAD21
PTPRGGH03J061876-None0.0000Enhancer71-TF_co-expression,Distancechr3:61876926-61877076ENSR3_9WK58
ATF7EP300MNTCREB1ZHX2COPS2CEBPBCTCF
PTPRGGH03J061894-3:61894529:C:G0.6152Enhancer306EliteTF_co-expression,Distancechr3:61894276-61896642ENSR3_BG9MP
COPS2NBNNFRKBNFXL1CTCFGATA3ZNF217ZFXZNF579RCOR1TRIM22GATAD2BEBF1CBFBSMARCA4RAD21MXI1IKZF1ATF2ELF1TBL1XR1ZNF263TBPJUNDNFICMEF2BPKNOX1GATA2TRIM28SKILBHLHE40FOSRELBMTA2SMARCE1CTBP1ATF7EEDIKZF2ZNF143ZNF207BMI1STAT1ZNF384TBX21ETV6BACH1EP300SIN3ACREMKLF5SMAD1SMARCA5DPF2NBNFOSL2E2F8BCL11ARUNX3RESTBATFSTAT3MEIS2MLLT1PAX5JUNBPOU2F2NFATC3PBX3MYCSPI1RB1ARID3ARFX5LEF1ZNF579ZBTB40COPS2ZNF507ZNF263PAX8NBNSP1HNF4ARAD21FOXA2YY1RXRA
PTPRGGH03J061903-3:61904910:C:CT0.6166Enhancer195EliteDistancechr3:61903502-61905360ENSR3_BG9P3
BHLHE40TAF1RAD51EP300PKNOX1IKZF1RELBCTCFIKZF2ETV6STAT3ZNF217FOSNFXL1MLLT1NFXL1TRIM22
PTPRGGH03J061925-3:61928115:G:A0.6018Enhancer161EliteDistancechr3:61925949-61928691ENSR3_BG9SD, ENSR3_9WKN3
RFX1NBNESRRARFX5HNRNPKCTCFPOLR2ASTAT3FOSEP300CEBPBMAFKZNF217RCOR1NR2F2RAD21MXI1JUNDCTCFRAD21
PTPRGGH03J061936-None0.0000Enhancer36-Distancechr3:61936046-61936076-
ATF2CTCF
PTPRGGH03J061947-None0.0000Enhancer82-Distancechr3:61947026-61947176ENSR3_9WKTG
NANOGUSF2USF1
PTPRGGH03J061954-3:61954138:C:T0.4032Enhancer121-Distancechr3:61954106-61954256ENSR3_BG9ZB
TRIM28L3MBTL2BHLHE40ZFXNBNSTAT3
PTPRGGH03J061955-3:61956211:C:T1.2689Enhancer117-TF_co-expression,Distancechr3:61955866-61957199ENSR3_BG9ZL
NFXL1POLR2AEBF1CTCFZFXPOLR2AMYCRAD21EP300YY1STAT3JUNDHNF4AZNF217CEBPBRESTFOSSP1MNTNBNCOPS2
PTPRGGH03J061966-3:61966229:T:C0.8468Enhancer91-Distancechr3:61966208-61966956ENSR3_9WL44, ENSR3_5JKJ8Z
ZFXZNF217GATA3CTCFJUNDFOSEP300NANOGSRFRAD21COPS2MAFFMAFKZFXTAF1
PTPRGGH03J061979-3:61979792:G:A0.1094Enhancer161EliteDistancechr3:61979786-61981076ENSR3_83S7FZ, ENSR3_9WL84
IKZF1COPS2ZFXPOLR2ASRFRAD51FOSTRIM22NBNIKZF1
PTPRGGH03J061996-3:61997060:A:G0.5438Enhancer82-Distancechr3:61996492-61997796ENSR3_9WLDS
NFXL1ZNF579GATA3ZNF217SMARCA5FOSZNF24SMARCE1ZNF579ZNF24GATA3GATA2SMARCA5FOXA2
PTPRGGH03J062006-3:62006838:T:A0.1423Enhancer137-Distancechr3:62006613-62007688ENSR3_9WLHW
ELF1COPS2TRIM22CLOCKCTCFZBTB40GATA3ETV6ZNF579GATAD2BZNF217ELF1PAX8SMARCE1FOXA1ZNF24SMARCA5
PTPRGGH03J062040-None0.0000Enhancer1-Distancechr3:62039006-62039156-
POLR2A
PTPRGGH03J062039-3:62039714:G:A0.5226Enhancer1-Distancechr3:62039441-62039906-
CTCF
PTPRGGH03J062067-3:62067235:T:C0.2724Enhancer20-Distancechr3:62067035-62067278-
IKZF1JUN
PTPRGGH03J062096-3:62097098:TATC:T0.0915Enhancer1-Distancechr3:62096993-62097414-
POLR2AZFXEP300COPS2
PTPRGGH03J062109-3:62109427:G:A0.9742Enhancer144EliteDistancechr3:62109386-62110157ENSR3_BGBRR, ENSR3_5JLFRJ
MAFKCTCFZNF143RAD21USF2USF1RCOR1JUNDFOSSTAT3BHLHE40ESRRACEBPB
PTPRGGH03J062123-3:62123626:T:G0.2959Enhancer56-Distancechr3:62123401-62124599ENSR3_BGBTW
FOSJUNCTCF
PTPRGGH03J062133-3:62134948:G:C1.0041Enhancer215EliteDistancechr3:62133581-62134996ENSR3_BGBXC
GATA2NFXL1MAFKZNF579CTCFSTAT3ZNF24CTBP1POLR2AGATA2NR2F2FOSEP300ESRRAMYCRFX5CREB1
PTPRGGH03J062145-None0.0000Enhancer117-Distancechr3:62145126-62145276ENSR3_9WMZT
MAFKNFXL1ZNF579MTA1ATF7RAD51MNTZNF24CTBP1FOSSMARCE1ZNF217ZNF574RCOR1JUNCREB1
PTPRGGH03J062146-3:62145359:C:G0.1372Enhancer130-Distancechr3:62145286-62145436ENSR3_9WMZT
MAFKNFXL1ZNF579MTA1ATF7RAD51MNTZNF24CTBP1FOSSMARCE1ZNF217ZNF574RCOR1JUNCREB1SMARCA5PAX8ZBTB40ELF1
PTPRGGH03J062148-3:62150315:G:A0.9581Enhancer153EliteDistancechr3:62148881-62150834ENSR3_9WN39
NBNPOLR2AIKZF1SPI1PKNOX1FOSSTAT3EP300SMARCA5PKNOX1
PTPRGGH03J062158-3:62161187:G:A0.9389Enhancer195EliteDistancechr3:62158066-62162684ENSR3_BGC43, ENSR3_9WN6K
ZFXUSF1COPS2POLR2AJUNDRESTRAD21FOSRXRAEP300NR2F2GATA2SP1CTCFPOLR2ANFXL1MNTFOSEP300RFX5BHLHE40CTCF
PTPRGGH03J062168-3:62171023:C:T0.8201Enhancer111-Distancechr3:62168819-62171226ENSR3_9WN92
GATA3SMARCE1JUNDZFXZBTB40ATF7IKZF1SPI1FOSMEF2BEBF1GATA2EP300ZFX
PTPRGGH03J062187-None0.0000Enhancer105-Distancechr3:62187066-62187216ENSR3_9WNFZ, ENSR3_5JLX4G
SIX4DPF2ZNF217GATA3ZNF579ZNF444CTCFETV6RAD21CUX1TRIM22SMC3ZNF24MTA1
PTPRGGH03J062188-3:62189293:C:T0.7417Enhancer235EliteDistancechr3:62188773-62189400ENSR3_BGC88, ENSR3_5JLXF6
JUNDNFXL1IKZF1PKNOX1CEBPBCTCFZBTB40TBX21SMC3CTBP1RAD21CUX1NBNZNF143ZNF507ZNF24SMARCE1MAXZNF217ELF1ZNF579MLLT1MNTYY1ETV6MTA1BHLHE40TRIM22SMARCA5ZNF444GATA3POU2F2ZNF574ZNF207SUZ12RFX5
PTPRGGH03J062260-None0.0000Enhancer6-Distancechr3:62260489-62260514--
PTPRGGH03J062293-None0.0000Enhancer98-Distancechr3:62293308-62293597-
NFXL1