GWAS Annotated Elements: PTPRG

Gene: protein tyrosine phosphatase receptor type G

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH03J060672 - 3:60673269:G:A 0.6259 Enhancer - TF_co-expression chr3:60672655-60673475 -
GH03J061521 - None 0.0000 Enhancer - C-HiC,Distance chr3:61521367-61521576
PKNOX1CBX5DPF2MTA2NFATC3IKZF2BMI1TBX21EEDRXRASP1ATF7HNF4AARID3ATBPBHLHE40CREMBCL11ARUNX3RELBRFX5JUNDNFYBETV6SKILNFYAPOU2F2BATFJUNBIKZF1EP300SPI1TCF7RCOR1
GH03J061536 - 3:61538083:T:G 1.0606 Enhancer - Distance chr3:61536951-61538260
TRIM28ETV4YY1NANOG
GH03J061558 - 3:61559347:A:G 0.6559 Promoter/Enhancer Elite TF_co-expression,Distance chr3:61558987-61565256
CTCFSMC3RAD21EP300SP1ETS1ASH2LNANOGKDM1ACHD4ZNF217DPF2MTA2NFATC3CTCFBMI1MLLT1HNF1AKDM4AJUNDARNTGATA3GATAD2BZNF207KDM5ATAF7BACH1GATA2POLR2APOLR2GEP300ZNF263TBPZBTB40RESTRAD21GABPAHDAC2ELF1AGO1SIN3AGATA4MAXTAF1TAF15BHLHE40RBFOX2MYCETS1IKZF1STAT3FOSNANOGYY1NBNIKZF2KDM1ASPI1ETV4NCOR1PCBP1SMC3RCOR1MXI1ZNF444ZBTB33RBM22AGO2HNRNPLLCREMPHF8ATF7RXRASOX13NR2F6EGR1L3MBTL2XRCC5ZNF143PRPF4SKISP1RELBZSCAN29ARID3ACEBPBTCF12HNF4GSUZ12PTBP1CHD1TBX3ZBTB7AZNF384HNF4AHDAC1RBBP5TBPRBM39GATAD2BHNRNPLLTRIM22SMC3GATA4ZNF687HDAC6TCF7L2DPF2MNTEGR1YY1FUSZNF24ZNF263BACH1KDM5ASP1TCF12CTCFJUNDGABPATFAP4STAT3MYCELF1ETV4RNF2HNRNPKBHLHE40TBPRB1IKZF2PCBP1USF2EP300RESTUSF1TAF7SAP30L3MBTL2ZFXTAF15NFXL1RBM39SUZ12CHD1KDM4AASH2LHDAC2SIN3AHNRNPLLPHF8POLR2AXRCC5MLLT1TAF15SIN3AASH2LRAD21RBBP5TAF1HNRNPLIKZF1HNF4AHNRNPLLAGO2TRIM22TFAP4SMARCA4EBF1KDM4ATAF1IKZF1CTCFSUZ12POLR2AZNF263SIN3AASH2LRAD21SMC3TRIM22MXI1HNF4AEP300IKZF2DPF2GABPASMARCA5AGO2TAF15ZNF143RBFOX2ZNF217RB1BACH1SMARCA4HDAC2JUNDBHLHE40USF1GATAD2BZBTB33PAX8
GH03J061565 - 3:61566007:G:A 0.1931 Enhancer - Distance chr3:61565697-61566620
MYCJUNDFOSRAD21IKZF2LEF1
GH03J061571 - 3:61571559:A:G 0.6270 Enhancer Elite Distance chr3:61571557-61572228
POLR2AFOSMAFKJUNDMYCSTAT3EP300CEBPBPKNOX1
GH03J061573 - 3:61576004:A:G 1.0366 Enhancer Elite Distance chr3:61573919-61576516
POLR2ATRIM28YY1JUNDSTAT3FOSMYCPOLR2AZBTB33RAD21
GH03J061589 - 3:61590104:G:T 0.6358 Enhancer Elite C-HiC,Distance chr3:61589540-61590155
C11orf30MAXZNF316JUNDMYCBACH1USF1USF2NFE2MAFKFOSCEBPBNFE2L2
GH03J061593 - 3:61593415:AAC:A 0.7410 Enhancer Elite eRNA_co-expression,Distance chr3:61593397-61593478 -
GH03J061594 - 3:61595090:C:T 0.7253 Enhancer Elite Distance chr3:61594600-61595643
HNF4AEP300CEBPB
GH03J061616 - 3:61617504:C:A 0.5376 Enhancer - Distance chr3:61616838-61617901
YY1SP1JUNDRXRAATF3HNF4ASMC3EP300RAD21PKNOX1MXI1
GH03J061626 - 3:61626742:G:A 1.1150 Enhancer Elite Distance chr3:61626433-61628309
HNF4AEHMT2ZBTB33ETV6NR2F2YY1HNRNPUL1ATF3ARID3ARAD21HNF1AFOXA2TCF12EGR1JUNDEP300ZNF263NR2F6RXRAHNF4GFOXA1HNF4ACREMSP1RCOR1TCF7ETS1ESR1HDAC2SIN3ANFE2L2LCORLKDM1AGATA2BHLHE40MAFKFOSCTBP1NFXL1TBX3CEBPBPKNOX1NBN
GH03J061628 - None 0.0000 Enhancer - Distance chr3:61628524-61629268
NBN
GH03J061629 - 3:61630625:A:T 1.0946 Enhancer Elite Distance chr3:61629473-61631276
ETV6PKNOX1TBX21EP300CTCFCEBPBJUNDBHLHE40NFXL1ZBTB33ZBTB40RELBTBX21MEF2ARUNX3
GH03J061634 - 3:61634792:T:C 0.3421 Enhancer Elite Distance chr3:61634786-61634936
ZNF263SP1TRIM28ARID3AJUNDETV6NFXL1HNF4AEP300RAD21FOXA1FOXA2TCF7PKNOX1TBX3CTBP1RXRA
GH03J061636 - 3:61638274:G:GT 0.4589 Enhancer Elite Distance chr3:61636891-61638392
TRIM28MLLT1IKZF1BMI1MEF2BMAXNFICSKILZBED1ZNF217ATF2RESTARNTIKZF2RXRARELBATF7NBNNFATC3HNF4ATBL1XR1GATAD2BELF1TRIM22YY1CREMEP300DPF2POLR2ARCOR1EEDMTA2SMARCA5IRF4BACH1RUNX3BHLHE40TBX21BCL11ABATFPAX5ZNF263TCF12RAD21SPI1ETV6SP1FOXA2NFXL1EBF1
GH03J061644 - 3:61645337:C:T 0.2293 Enhancer Elite Distance chr3:61644666-61645899
ETV6TCF12FOXA2FOXA1TBX3EP300TCF7SP1CREMSKIARID3AKDM1ATFAP4TRIM28RBM22CHD4RXRANR3C1USF2NFYBMAXUSF1
GH03J061646 - 3:61646703:T:C 1.0322 Enhancer Elite Distance chr3:61646148-61647587
POLR2A
GH03J061649 - 3:61649920:C:T 0.0575 Enhancer - TF_co-expression,Distance chr3:61649588-61650952
ZNF263PKNOX1ZNF507ZNF217SMARCE1ZNF24RAD21FOSEP300BHLHE40ZBTB40COPS2NFXL1LEF1ZNF579FOXK2FOXM1FOXA1ARNTCTBP1NFE2L2ZNF384PKNOX1EP300
GH03J061655 - None 0.0000 Enhancer - Distance chr3:61655086-61655236
CTCFFOSL2FOSETV6JUND
GH03J061663 - 3:61663875:C:G 0.5076 Enhancer Elite Distance chr3:61663452-61664816
BHLHE40TRIM28IKZF1TCF12TAF1LEF1FOSL2SIN3AJUNDFOSARNTESR1RAD21NR3C1STAT3CTBP1JUNMYCNFXL1PKNOX1ESR1
GH03J061666 - 3:61666289:C:T 0.5443 Enhancer - Distance chr3:61666236-61668171
ZNF217NBNFOSTRIM22SMARCA5ZNF579SMARCA4NBNNFXL1YY1FOXA1ZBTB40MAXFOXA2RAD21HNF4ASP1TCF12RXRAZNF687
GH03J061674 - 3:61674895:T:G 0.2587 Enhancer - Distance chr3:61674254-61675099
EP300ZNF574COPS2
GH03J061682 - 3:61684238:A:G 0.1601 Enhancer Elite Distance chr3:61682181-61684858
COPS2MNTRELBIKZF1NFATC3JUNDEP300MTA2IKZF2BMI1ATF7NBNDPF2CREB1FOSTBX21MYCFOSZNF579JUNDPKNOX1STAT3SMARCA4POLR2AEP300NR3C1SMARCA5CTCFRAD21EP300POLR2AZNF579SMARCA5SMARCE1ZNF507
GH03J061685 - 3:61685946:T:C 0.2822 Enhancer - Distance chr3:61685766-61689684
CTCFPOLR2ASIX4STAT3ZNF263CTCFUSF1PKNOX1ZNF217SP1STAT3RXRARAD21JUNDZNF24ATF3HNF4AMYCNR3C1GATAD2BFOSZNF574ZBTB33CEBPBSMARCE1FOSL2NFXL1NFRKBNBNHNF1AZKSCAN1FOXA1CTCFNFXL1CHD1SMARCA5ASH2LSIN3ASMC3SP1EZH2TCF12YY1HDAC2SMARCA4EP300ETS1TBPNANOGRAD21BRCA1ZNF217CTCFMAFFMAFKUSF1NR2F2POLR2AZNF579
GH03J061693 - 3:61693338:T:C 0.1138 Enhancer - Distance chr3:61693301-61693841
MNTTRIM22PAX8ZNF217
GH03J061696 - 3:61696709:C:G 0.3191 Enhancer - Distance chr3:61696673-61697751
NFXL1ZNF507
GH03J061698 - None 0.0000 Enhancer Elite Distance chr3:61698426-61698576
ZBTB40GATA3ZNF574ELF1SMARCA5NFRKBZNF24SMARCE1FOXA2TRIM22
GH03J061699 - 3:61702040:G:A 0.6473 Enhancer Elite Distance chr3:61699039-61702330
NFXL1HDAC2EP300RAD51MXI1TAF1NANOGCHD7SP1BCL11AETV6SMARCA4FOSEBF1BHLHE40RAD51USF2MITFUSF1KDM1A
GH03J061702 - 3:61702703:A:G 0.4060 Enhancer Elite Distance chr3:61702586-61702736
NFXL1
GH03J061703 - 3:61705511:G:GA 0.6092 Enhancer Elite Distance chr3:61703494-61705556
HNF4ATCF12SIN3AIKZF1RESTATF2
GH03J061707 - 3:61709611:C:T 1.0015 Enhancer Elite Distance chr3:61707327-61710460
CTCFHDAC2NFXL1KDM1AEP300STAT3MYCFOS
GH03J061725 - 3:61726369:T:C 0.0708 Enhancer - TF_co-expression,Distance chr3:61725355-61726812
MLLT1ETV6ZNF384SIX4MNTTRIM22ZNF217ASH2LKDM1ASKIRAD21ATF7CREMSMARCA5NR2F2NCOR1NR2F6TBX21ARID3AJUNDHNF4GRESTMLLT1HDAC2EP300RXRAMAFFMAFKELF1PKNOX1FOXK2FOXA2FOXA1ZBTB7ATCF7COPS2
GH03J061728 - 3:61730869:G:C 0.7772 Enhancer Elite Distance chr3:61728866-61731197
MYCNBNSIX4HNF4GZBTB33RAD21GABPARESTRXRACREMMAXHNF4AYY1JUNDNR2F2SP1FOXA1ETV6FOXA2EP300HDAC2ATF3SMARCE1SMARCA4MYCELF1MAFKETV6PKNOX1
GH03J061742 - 3:61742736:C:T 0.2322 Enhancer - Distance chr3:61742601-61743000
HNRNPLLZBTB33
GH03J061783 - 3:61784841:C:T 0.8725 Enhancer - Distance chr3:61783790-61785096
TRIM22ZNF574ZNF507MTA2DPF2FOSBATFJUNDSTAT3GATAD2BEP300NFXL1ZBTB40MLLT1
GH03J061807 - 3:61808303:G:C 0.3816 Enhancer Elite Distance chr3:61807955-61812191
ZNF579TRIM28MXI1GATA2SMARCE1EP300RCOR1ZNF263SMARCA4JUNDGATA3ZNF217ZNF24BHLHE40ARNTZFXPOLR2AEP300NR2F2JUNDYY1MAXZBTB33RAD21RESTSP1ATF3EGR1RXRAHNF4GHNF4AGABPAZFXZNF217NFXL1MNTTRIM22NBNGATAD2BSP1HNF4ARAD21EP300ZBTB40ZFXZNF217GATA3NFICCTCFUSF1ZBTB40ZFXZNF579NFRKBGATA3GATA2RCOR1ZBTB40GATAD2BZNF24
GH03J061821 - None 0.0000 Enhancer - Distance chr3:61821946-61822096
ETV6TRIM28ZNF263FOXA2EP300PKNOX1ARNTCTCF
GH03J061828 - 3:61828698:T:C 0.1996 Enhancer - Distance chr3:61828600-61829000
ZNF217FOXA2
GH03J061829 - None 0.0000 Enhancer - Distance chr3:61829200-61829600
ZNF217FOXA2PAX8SP1NFXL1NR2F2YY1RXRAHNF4ARAD21SMARCA4EP300CTCFFOS
GH03J061842 - 3:61842848:A:C 0.9761 Enhancer - eRNA_co-expression,Distance chr3:61842804-61843191
NFXL1ZBTB40
GH03J061847 - 3:61849659:A:G 1.2458 Enhancer Elite TF_co-expression,Distance chr3:61847050-61849969
YY1EP300NANOGZNF574EHMT2RAD21POLR2AKDM1AZNF217NCOR1MAXYY1ZBTB33HNF4AJUNDHDAC2ATF3SP1FOXA1RXRANR2F2HNF4GNR3C1FOSSTAT3RESTMNTNFXL1ZKSCAN1EP300POLR2ARXRASTAT3NR2F2RAD21GATA2FOSZNF217ZNF574COPS2PAX8NBN
GH03J061871 - 3:61871183:A:G 1.5919 Enhancer - Distance chr3:61871052-61872506
ATF7CTBP1MAFKNEUROD1NCOA3PAX8MAFKSMARCA5SIN3AMYCUSF2TCF12USF1
GH03J061873 - 3:61874515:C:CT 0.5948 Enhancer Elite Distance chr3:61873761-61876251
SREBF1JUNRFX5HSF1ESRRASP1ZFXSIN3AETS1NANOGEP300CTCFPOLR2AATF2ATF7JUNDTAF1CREB1NBNZNF574ATF3JUNSP1RAD21
GH03J061876 - None 0.0000 Enhancer - TF_co-expression,Distance chr3:61876926-61877076
ATF7EP300MNTCREB1ZHX2COPS2CEBPBCTCF
GH03J061894 - 3:61894529:C:G 0.6152 Enhancer Elite TF_co-expression,Distance chr3:61894276-61896642
COPS2NBNNFRKBNFXL1CTCFGATA3ZNF217ZFXZNF579RCOR1TRIM22GATAD2BEBF1CBFBSMARCA4RAD21MXI1IKZF1ATF2ELF1TBL1XR1ZNF263TBPJUNDNFICMEF2BPKNOX1GATA2TRIM28SKILBHLHE40FOSRELBMTA2SMARCE1CTBP1ATF7EEDIKZF2ZNF143ZNF207BMI1STAT1ZNF384TBX21ETV6BACH1EP300SIN3ACREMKLF5SMAD1SMARCA5DPF2NBNFOSL2E2F8BCL11ARUNX3RESTBATFSTAT3MEIS2MLLT1PAX5JUNBPOU2F2NFATC3PBX3MYCSPI1RB1ARID3ARFX5LEF1ZNF579ZBTB40COPS2ZNF507ZNF263PAX8NBNSP1HNF4ARAD21FOXA2YY1RXRA
GH03J061903 - 3:61904910:C:CT 0.6166 Enhancer Elite Distance chr3:61903502-61905360
BHLHE40TAF1RAD51EP300PKNOX1IKZF1RELBCTCFIKZF2ETV6STAT3ZNF217FOSNFXL1MLLT1NFXL1TRIM22
GH03J061925 - 3:61928115:G:A 0.6018 Enhancer Elite Distance chr3:61925949-61928691
RFX1NBNESRRARFX5HNRNPKCTCFPOLR2ASTAT3FOSEP300CEBPBMAFKZNF217RCOR1NR2F2RAD21MXI1JUNDCTCFRAD21
GH03J061936 - None 0.0000 Enhancer - Distance chr3:61936046-61936076
ATF2CTCF
GH03J061947 - None 0.0000 Enhancer - Distance chr3:61947026-61947176
NANOGUSF2USF1
GH03J061954 - 3:61954138:C:T 0.4032 Enhancer - Distance chr3:61954106-61954256
TRIM28L3MBTL2BHLHE40ZFXNBNSTAT3
GH03J061955 - 3:61956211:C:T 1.2689 Enhancer - TF_co-expression,Distance chr3:61955866-61957199
NFXL1POLR2AEBF1CTCFZFXPOLR2AMYCRAD21EP300YY1STAT3JUNDHNF4AZNF217CEBPBRESTFOSSP1MNTNBNCOPS2
GH03J061966 - 3:61966229:T:C 0.8468 Enhancer - Distance chr3:61966208-61966956
ZFXZNF217GATA3CTCFJUNDFOSEP300NANOGSRFRAD21COPS2MAFFMAFKZFXTAF1
GH03J061979 - 3:61979792:G:A 0.1094 Enhancer Elite Distance chr3:61979786-61981076
IKZF1COPS2ZFXPOLR2ASRFRAD51FOSTRIM22NBNIKZF1
GH03J061996 - 3:61997060:A:G 0.5438 Enhancer - Distance chr3:61996492-61997796
NFXL1ZNF579GATA3ZNF217SMARCA5FOSZNF24SMARCE1ZNF579ZNF24GATA3GATA2SMARCA5FOXA2
GH03J062006 - 3:62006838:T:A 0.1423 Enhancer - Distance chr3:62006613-62007688
ELF1COPS2TRIM22CLOCKCTCFZBTB40GATA3ETV6ZNF579GATAD2BZNF217ELF1PAX8SMARCE1FOXA1ZNF24SMARCA5
GH03J062040 - None 0.0000 Enhancer - Distance chr3:62039006-62039156
POLR2A
GH03J062039 - 3:62039714:G:A 0.5226 Enhancer - Distance chr3:62039441-62039906
CTCF
GH03J062067 - 3:62067235:T:C 0.2724 Enhancer - Distance chr3:62067035-62067278
IKZF1JUN
GH03J062096 - 3:62097098:TATC:T 0.0915 Enhancer - Distance chr3:62096993-62097414
POLR2AZFXEP300COPS2
GH03J062109 - 3:62109427:G:A 0.9742 Enhancer Elite Distance chr3:62109386-62110157
MAFKCTCFZNF143RAD21USF2USF1RCOR1JUNDFOSSTAT3BHLHE40ESRRACEBPB
GH03J062123 - 3:62123626:T:G 0.2959 Enhancer - Distance chr3:62123401-62124599
FOSJUNCTCF
GH03J062133 - 3:62134948:G:C 1.0041 Enhancer Elite Distance chr3:62133581-62134996
GATA2NFXL1MAFKZNF579CTCFSTAT3ZNF24CTBP1POLR2AGATA2NR2F2FOSEP300ESRRAMYCRFX5CREB1
GH03J062145 - None 0.0000 Enhancer - Distance chr3:62145126-62145276
MAFKNFXL1ZNF579MTA1ATF7RAD51MNTZNF24CTBP1FOSSMARCE1ZNF217ZNF574RCOR1JUNCREB1
GH03J062146 - 3:62145359:C:G 0.1372 Enhancer - Distance chr3:62145286-62145436
MAFKNFXL1ZNF579MTA1ATF7RAD51MNTZNF24CTBP1FOSSMARCE1ZNF217ZNF574RCOR1JUNCREB1SMARCA5PAX8ZBTB40ELF1
GH03J062148 - 3:62150315:G:A 0.9581 Enhancer Elite Distance chr3:62148881-62150834
NBNPOLR2AIKZF1SPI1PKNOX1FOSSTAT3EP300SMARCA5PKNOX1
GH03J062158 - 3:62161187:G:A 0.9389 Enhancer Elite Distance chr3:62158066-62162684
ZFXUSF1COPS2POLR2AJUNDRESTRAD21FOSRXRAEP300NR2F2GATA2SP1CTCFPOLR2ANFXL1MNTFOSEP300RFX5BHLHE40CTCF
GH03J062168 - 3:62171023:C:T 0.8201 Enhancer - Distance chr3:62168819-62171226
GATA3SMARCE1JUNDZFXZBTB40ATF7IKZF1SPI1FOSMEF2BEBF1GATA2EP300ZFX
GH03J062187 - None 0.0000 Enhancer - Distance chr3:62187066-62187216
SIX4DPF2ZNF217GATA3ZNF579ZNF444CTCFETV6RAD21CUX1TRIM22SMC3ZNF24MTA1
GH03J062188 - 3:62189293:C:T 0.7417 Enhancer Elite Distance chr3:62188773-62189400
JUNDNFXL1IKZF1PKNOX1CEBPBCTCFZBTB40TBX21SMC3CTBP1RAD21CUX1NBNZNF143ZNF507ZNF24SMARCE1MAXZNF217ELF1ZNF579MLLT1MNTYY1ETV6MTA1BHLHE40TRIM22SMARCA5ZNF444GATA3POU2F2ZNF574ZNF207SUZ12RFX5
GH03J062260 - None 0.0000 Enhancer - Distance chr3:62260489-62260514 -
GH03J062293 - None 0.0000 Enhancer - Distance chr3:62293308-62293597
NFXL1