GWAS Annotated: SMARCA2

Gene	GHID	GWAS Hit	Lead SNP	-log10P	Type	Score	Elite	Association Evidence	Location	External Links	TFBSs
SMARCA2	GH09J001471	-	None	0.0000	Promoter	184	-	Distance	chr9:1470550-1470610	SMARCA2_2	IKZF1JUNBSKILCUX1GATA3DPF2CTBP1
SMARCA2	GH09J001759	-	None	0.0000	Enhancer	110	-	eRNA_co-expression	chr9:1759074-1759256	ENSR9_83DP2	FOXA1FOXA2POLR2ATBPIKZF2ZNF687PKNOX1RAD51NFYBTRIM22KLF5USF2USF1ELF1NFICZNF384BHLHE40TCF12TAF1RUNX3ARID3A
SMARCA2	GH09J001875	-	9:1876003:G:T	0.3680	Enhancer	194	-	eRNA_co-expression	chr9:1875990-1876393	-	POLR2APKNOX1IKZF1ASH2LRELBEEDIKZF2NFICSMAD1MTA2TBX21RUNX3TAF1ATF2ZNF217CUX1SRFNFYBZBED1SMC3SKILKLF5BCL3ETV6TCF12MLLT1MTA3RESTMEF2BZNF143GATAD2BCBFBBHLHE40TRIM22DPF2EBF1ARID3ACHD1ELF1TBL1XR1BACH1RAD51ARNTPOU2F2STAT3YY1EP300BATFPAX5E2F8TCF7MYBATF7NBNZNF687JUNBJUNDHSF1RAD21MXI1NFATC1MAXIRF4NFATC3CREMMEF2CSTAT5AMEF2ABCL11ABCL3MTA3MNTSMC3TAF1TBPPAX8
SMARCA2	GH09J001978	-	9:1979400:G:C	0.4559	Enhancer	232	Elite	Distance	chr9:1978793-1980856	ENSR9_C7B7	JUNDATF3SP1HNF4ARAD21FOXA1ZBTB33FOXA2GABPAMAXTAF1FOSRXRAEGR1RESTHNF4GNRF1TFAP4YY1SMARCA4FOXA1RXRAATF3FOXA2STAT3JUNDMYCSP1CEBPBELF1HNF4ATBX21FOSZSCAN29MTA2IKZF2POLR2AIKZF1EP300MLLT1TAF1DPF2TCF12RAD21HNF4AYY1BATFZBTB33RXRA
SMARCA2	GH09J001994	-	9:1994334:C:T	0.5882	Enhancer	111	-	Distance	chr9:1994265-1995870	ENSR9_5GMZD, ENSR9_9RDC	E2F1ATF2ATF7CREB1CTCFJUNDCREMGATA3CEBPBRAD21SRFSTAT3KDM1AASH2LCHD7SP1NANOGEP300JUNDHDAC2ATF3MYC
SMARCA2	GH09J002013	-	9:2017236:G:C	1.4060	Promoter/Enhancer	780	Elite	eQTLs,eRNA_co-expression,Distance	chr9:2013476-2020552	ENSR9_BDRJ, ENSR9_9RL8, ENSR9_BDRS, ENSR9_C7F2, SMARCA2_1	CBX8EP300CTCFJUNDSTAT3CEBPBFOSEZH2KDM1AIKZF2POLR2AL3MBTL2SMARCA5CTCFGMEB1ZNF444U2AF1RCOR1ASH2LTAF1HNRNPLLRBFOX2MLLT1HNRNPLSAP30MNTRBBP5HDAC1RAD21ZSCAN29KDM5BPHF8POLR2GEP300MXI1TAF9BYY1RNF2GATAD2BRESTCREB3L1EEDZBTB7AIKZF1PKNOX1RBM39SMC3ZBTB7BSMAD5E4F1SIN3AKDM4ANRF1MAXPCBP1MTA3ZNF207SAFBSP1KDM4BSKIZBTB33UBTFMYCTEAD4POU2F2SOX6TAF15HNRNPKEGR1ETS1SKILZNF143GABPAZNF263CREMCTBP1GATA1BHLHE40DPF2NFIBXRCC5HCFC1CEBPBATF7IRF3TCF12KLF5NFYBRFX5GABPB1RB1ELK1ELF1IRF1E2F4USF1NFYAPBX3RBM25MBD2ASH1LHMBOX1CREB1PAX5MEIS2BACH1JUNDATF2PMLCUX1CBFBJUNBFOSJUNFOXK2MEF2CFOXA2FOXA1FOSL2TBPSMAD1ZBTB11FOSL1ATF4ZBTB33ARID3ASMARCA5ATF3PHF21ACHD1TBL1XR1BATFARNTE2F8E2F1PRDM10TRIM22CEBPBRNF2RBM39TCF7L2MXI1POLR2GRBBP5SMAD5EZH2SIN3AHNRNPLLHDAC1HNRNPKPCBP1NR3C1TAF1ZFXCTCFCHD1SUZ12HNRNPLBACH1ZNF207NRF1EP400PRPF4SAP30PHF8MTA3ZSCAN29KDM4AHDAC2ZNF143EP300YY1EGR1MYNNMAXUBTFIKZF2SP1GATAD2BSTAT3SMAD5HDAC1RUNX3MYCTBPIKZF1HDAC2BHLHE40E4F1EEDELF1ZNF263MNTETS1KDM4APHF8TCF12SMARCA5BACH1SPI1BCL11AZSCAN29GABPB1GABPAKDM4APCBP1ASH2LRNF2EP400RBM22IKZF2SIN3AZBTB7ACHD1ZNF444ZBTB2HNRNPKELF1GMEB1NRF1RESTMLLT1PHF8EP300MAXMTA2SUZ12BCL3ZBED1EGR1HDAC2CREB1PKNOX1MYNNSMAD5RB1TBL1XR1MYCSAP30BHLHE40STAT1ZNF143IRF4CREMNR3C1SOX6JUNDPOU2F2ZNF687GATAD2BSAFBARNTMEIS2YY1BCL11ARUNX3SPI1SMARCA5ZNF207ZNF217PAX5UBTFARID3ACTBP1KLF5NBNKDM1ATCF12BACH1ZFXDPF2RBBP5HNRNPLLRELBRCOR1SIN3BZBTB33SP1YY1MAXTBPEP400RXRAHNF4AFOXK2FOXA2SAP30FOXA1ATF4ATF3HDAC2CHD7TCF12NANOGEP300JUNDZNF384TBPRUNX3PKNOX1MEIS2JUNB
SMARCA2	GH09J002021	-	9:2022333:G:A	0.5783	Enhancer	280	Elite	Distance	chr9:2021406-2027799	ENSR9_757N6, ENSR9_9RN9, ENSR9_83LCS, ENSR9_9RNK, ENSR9_BDT2, ENSR9_9RPG	GATA1YY1DPF2GATA2SOX6CBFA2T3TEAD4TAL1PKNOX1EP300GATA3SPI1ARID1BMEIS2GATA1NFATC1MEIS2ARID1BDPF2SMARCA4C11orf30CBFA2T3ZNF316SKILSTAT5AZNF384EBF1MLLT1TBL1XR1IKZF1NBNMEF2BSMAD1MTA2EBF1EP300TBX21CEBPBHNF4APOLR2AZNF316CTBP1RFX1POLR2AGATA2CUX1GATA3
SMARCA2	GH09J002027	-	None	0.0000	Enhancer	173	Elite	Distance	chr9:2027840-2027990	-	ZNF316CTBP1RFX1POLR2AGATA2CUX1GATA3NFIBNFIC
SMARCA2	GH09J002029	-	9:2032845:G:A	0.1906	Enhancer	117	-	Distance	chr9:2029440-2033174	ENSR9_83LK5	POLR2AATF4GATA2FOXA1GATA3ZBTB40ZFP91GATA1DPF2NFRKBNCOR1IKZF1EP300EHMT2TAL1CEBPBMYBL2SPI1CBFA2T3
SMARCA2	GH09J002039	-	9:2039793:A:C	1.0713	Enhancer	1	-	Distance	chr9:2039325-2040271	-	POLR2ASMARCA4
SMARCA2	GH09J002043	-	9:2044094:G:A	0.9700	Enhancer	202	Elite	Distance	chr9:2043176-2044585	-	IKZF1ATF2IKZF2ATF7MTA2EEDSKILZBED1NFATC1YY1CBFBIRF4BCL11ABATFCREMRUNX3NFICARID3ASPI1JUNBPOLR2AETV6RUNX3SPI1RBM25
SMARCA2	GH09J002052	-	9:2053379:A:G	0.2739	Enhancer	242	Elite	C-HiC,Distance	chr9:2052766-2056126	ENSR9_BF26, ENSR9_9S2Q	YY1ARID3ASTAT5AARNTIKZF2ZNF217ELF1PAX8SRFMLLT1GATAD2BYY1NFATC3TCF7ARID3ATBL1XR1GABPACBX5RCOR1ZNF384EEDZBED1NFICBHLHE40MEF2CPOLR2AMTA2EP300ZNF687JUNBDPF2MXI1RUNX3IRF4MEF2ARESTTRIM22TAF1ATF7RELBSTAT3TBX21ZNF592EBF1ETV6ETS1BACH1ATF2SPI1MTA3BCL3IKZF1PKNOX1MEF2BTCF12RFX5BATFPAX5KLF5SKILNFATC1BCL11ACBFBCREMIKZF1NBNMEF2BSRFTRIM22ZNF217JUNBMTA3MTA2BMI1NFICGABPAARID3ATCF12NFATC3TCF7ETS1ZBED1NFATC1STAT3CBFBBATFTBX21MEF2ABCL3SKILRUNX3ATF2RELBMEF2CETV6EP300IRF4PAX5EBF1JUNDDPF2KLF5STAT5ABCL11ACEBPBPKNOX1POU2F2EEDTBL1XR1CREMFOSATF7IKZF2SPI1SRF
SMARCA2	GH09J002059	-	9:2059341:T:C	0.0822	Enhancer	99	-	C-HiC,Distance	chr9:2059220-2059370	-	GATA3IKZF1FOXA1RELBTBL1XR1DPF2IKZF2EBF1MTA2NFATC3SKIL
SMARCA2	GH09J002085	-	9:2085495:A:G	0.6564	Enhancer	1	-	Distance	chr9:2085339-2086411	ENSR9_9SCJ	EP300YY1
SMARCA2	GH09J002087	-	None	0.0000	Enhancer	111	-	C-HiC,Distance	chr9:2087800-2087970	ENSR9_9SD5, ENSR9_5H926	MTA3CTCFMXI1EHMT2TBX21TBL1XR1BHLHE40TBPRAD21RAD51RUNX3KDM1APKNOX1TCF7ZNF143USF1TRIM22SP1BATFSMC3NFYBPBX3
SMARCA2	GH09J002107	-	9:2109711:T:C	0.6369	Enhancer	91	-	eQTLs,C-HiC,Distance	chr9:2107817-2110533	ENSR9_BFB6	C11orf30MAFKMAFFZNF316RFX1RESTPOLR2ABHLHE40
SMARCA2	GH09J002116	-	None	0.0000	Enhancer	71	-	Distance	chr9:2116260-2116330	ENSR9_83NCP	POLR2ACTCFZNF263TCF12ZNF143RAD21SMC3
SMARCA2	GH09J002124	-	9:2126139:T:G	2.1499	Enhancer	133	Elite	C-HiC,Distance	chr9:2124977-2127780	ENSR9_BFDM, ENSR9_9SRM	TBX21POLR2AGATA1ATF3ZBTB40IRF1GATA2SRFMLLT1EP300
SMARCA2	GH09J002146	-	None	0.0000	Enhancer	82	-	Distance	chr9:2146760-2147030	ENSR9_83P2D, ENSR9_5HM53	CTCFBMI1RFX1RAD21SMC3YY1
SMARCA2	GH09J002153	-	9:2154255:T:C	0.6071	Enhancer	1	-	Distance	chr9:2153163-2154319	-	-
SMARCA2	GH09J002155	-	9:2158662:G:T	0.6740	Promoter/Enhancer	510	Elite	eQTLs,Distance	chr9:2155765-2161350	ENSR9_9T59, ENSR9_BFK8, ENSR9_5HP3M, ENSR9_BFKC, ENSR9_9T62, ENSR9_83PB7	MTA2CUX1RUNX3CREMCEBPBRUNX3YY1MAFKGABPAEBF1CTCFIKZF2IKZF1ASH2LPOLR2AFOXA1YY1MXI1L3MBTL2SIN3AZBED1USF2MNTZNF687MYCTAF1EGR1PAX5BHLHE40MAXEP300SMC3SP1ZFP91TBX21ZNF384RUNX3ZBTB40RBBP5NFICETV6GABPARESTTAF1RELBRAD21ATF7FOSSKILSPI1CHD7MYCEP300CEBPBHDAC2TAF7NANOGTCF12GATA2POLR2ARAD21REST
SMARCA2	GH09J002161	-	9:2161949:C:T	0.2284	Enhancer	1	-	Distance	chr9:2161800-2162000	-	-
SMARCA2	GH09J002179	-	9:2180149:G:A	1.2277	Enhancer	82	-	Distance	chr9:2179460-2181170	ENSR9_83PPF, ENSR9_5HSQG, ENSR9_9TD2	CTCFPOLR2ARAD21CREB1FOSSMC3EP300RFX1GABPACEBPB
SMARCA2	GH09J002181	-	9:2182562:C:T	0.3252	Enhancer	82	-	eQTLs,Distance	chr9:2181486-2182777	ENSR9_9TDC	CTCFCHD7ZBTB33ASH2LHDAC2SIN3ARAD21SMC3YY1BACH1ZNF143NANOG
SMARCA2	GH09J002200	-	9:2200678:T:G	1.3126	Enhancer	71	-	C-HiC	chr9:2200291-2201190	-	CTCFNANOG
SMARCA2	GH09J002241	-	9:2241091:A:G	0.3432	Enhancer	513	Elite	C-HiC	chr9:2240881-2243456	ENSR9_C826, ENSR9_BG2G, ENSR9_9W34	EZH2YY1CTCFTAF7KDM4AMAFKKDM1ARAD21ZNF184TRIM28RBBP5C11orf30RBM39ASH2LHDAC2MNTL3MBTL2SIN3AGATAD2BIKZF2GATA2ATF7ZSCAN29IKZF1YY1GABPASP1HNRNPLLZBTB33ARID1BRNF2NR2F2E2F1ZBTB40ETS1BCL3U2AF1POLR2ACBFBRFX1XRCC5STAT1IRF1PKNOX1ELF1CBX3ATF2CHAMP1CBX5PCBP1ATF3ZFXTAF1MAXZNF444NFRKBRAD21CREB1FOXM1CCAR2RXRAFOSL2SRFRFX5POLR2GE4F1JUNDSTAT3PTBP1EP300TCF7NUFIP1MXI1CREMGATA3TAF7HDAC3JUNGMEB1MYCARID3AHNF4GNEUROD1RCOR1ZNF143HCFC1IRF4HNF4ARB1ZNF579TBPMEF2CMEF2AFOXA1SMC3RLFTRIM22SMARCA5NFE2L2EGR1ESR1ZNF217BHLHE40RESTTCF12FOSRELBPHF8DEAF1NFIBARNTUSF1BRCA1USF2NR3C1ZEB1RUNX3ZNF263SMARCA4ELK1U2AF2CTCFNEUROD1JUNDEBF1CBFA2T3SP1SIN3ANRF1CREB1FOXA1