GWAS Annotated: SPTLC3

Gene: serine palmitoyltransferase long chain base subunit 3

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
SPTLC3GH20J012965-20:12965680:G:A1.6384Enhancer1-C-HiC,Distancechr20:12965656-12966306-
FOSCTCF
SPTLC3GH20J012966-None0.0000Enhancer82-C-HiC,Distancechr20:12966572-12966722ENSR20_975XW, ENSR20_553CCW
CTCFSMC3RAD21TRIM22
SPTLC3GH20J012970-None0.0000Enhancer171-C-HiC,Distancechr20:12970392-12970542ENSR20_97623, ENSR20_553D2G
CTCFRAD21KDM1ASKISMC3TRIM22JUNDZNF384
SPTLC3GH20J012976-20:12976939:G:C1.5865Enhancer275EliteeQTLs,C-HiC,Distancechr20:12976540-12978366-
KDM5APOLR2GSKINR2F6SP1RXRAFOXA1HNF4AFOXA2EP300HDAC2JUNDXRCC5RAD21ELF1HNF4GLCORLTFAP4ARID3AASH2LEHMT2HNRNPKGATA3HDAC1CEBPBFOXA1RBFOX2HNRNPLNR2F6KDM1AZBTB33HNRNPUL1MAXRESTETV4ELF1EGR1SKIHNF4GSOX13GATA4HDAC2NR2F2RXRASP1JUNDLCORLCREMHNF1AHNF4AFOXA2ARID3AFOXA1EP300NCOR1ZNF384NFE2L2CEBPBTCF7MAFFMAFKHNRNPK
SPTLC3GH20J012979-20:12979237:A:G0.6169Enhancer273EliteeQTLs,C-HiC,Distancechr20:12979003-12979438-
MAFKASH2LETV4CREMFOXK2GATA3HNF1ANR2F6FOXA1SP1EHMT2RXRAFOXA2TCF7RAD21HNF4GSOX13HDAC2FOSL2KDM1AARID3AHNF4AJUNDSMC3CEBPBGATA4EP300
SPTLC3GH20J012984-20:12985441:T:G0.6253Enhancer82-eQTLs,C-HiC,Distancechr20:12984194-12985495ENSR20_97668
MYCCEBPBSTAT3FOS
SPTLC3GH20J012994-None0.0000Enhancer41-Distancechr20:12994835-12994906-
ZBTB40GABPA
SPTLC3GH20J013008-20:13008574:AACTT:A1.3662Promoter/Enhancer575EliteeQTLs,Distancechr20:13008545-13011800ENSR20_976F5, ENSR20_C39T4, SPTLC3_1, SPTLC3_2
ASH2LMAXHNF4APOLR2ARAD21SP1RXRAEGR1KDM1ARESTTAF1POLR2GSIN3BTBPCTCFRFX1EP300GATA3ZNF217JUNDHDAC2YY1KDM5ARAD21SMC3CHD4MTA3MEF2BNFICNFATC3ZNF217ATF2ATF3RCOR1IKZF1BMI1GATAD2BEP300JUNBRXRAMXI1SP1SMAD1IKZF2RELBPOU2F2TCF12DPF2ELF1ATF7SPI1TBX21BCL11ACREMMEF2ARESTMAFFRUNX3PAX5MAFKCREB1BATFEEDFOSNFYBMTA2IRF4RFX5BHLHE40STAT3NBNJUNDCEBPBSIN3ARBFOX2FOXA1FOXA2ARID3A
SPTLC3GH20J013016-20:13016831:A:G1.2921Enhancer56-eQTLs,Distancechr20:13016771-13018132ENSR20_8DC27, ENSR20_976HT
RBFOX2BHLHE40USF1FOSZNF24ATF7JUNDCEBPBCTCFTCF12RESTSP1
SPTLC3GH20J013022-None0.0000Enhancer36-Distancechr20:13022832-13022982ENSR20_976K7
FOSNBN
SPTLC3GH20J013027-20:13028169:C:T0.9374Enhancer242EliteeQTLs,Distancechr20:13027788-13031254ENSR20_976LP, ENSR20_B4KS5
MYCCEBPBFOSSTAT3MAFKMAFFRBFOX2SIN3ATCF12BCL3MNTATF3PKNOX1JUNDZHX2FOSCREB1NR3C1ZNF24EP300DPF2FOSL2STAT3MYCSMARCE1SP1JUNCEBPBBHLHE40ZBTB40
SPTLC3GH20J013034-20:13035327:T:G0.8928Enhancer99-eQTLs,C-HiC,Distancechr20:13034930-13036469-
NBNSP1ATF7JUNDCEBPB
SPTLC3GH20J013054-20:13055688:A:G1.7713Enhancer80EliteeQTLs,C-HiC,eRNA_co-expression,Distancechr20:13054450-13056246-
FOXK2
SPTLC3GH20J013059-20:13059564:T:C0.7280Enhancer195EliteeQTLs,Distancechr20:13059372-13059582-
HDAC1ASH2LEHMT2KDM1AHDAC2NR2F6CREMNCOR1HNF1AMAFFPRPF4MAFKEP300RAD21XRCC5TCF12CTCFPOLR2A
SPTLC3GH20J013067-20:13067915:A:G2.3156Enhancer36-eQTLs,Distancechr20:13067723-13069200-
GATA3RXRA
SPTLC3GH20J013089-20:13089773:G:A1.6084Enhancer220-eQTLs,C-HiC,Distancechr20:13089250-13090722-
ETV4CHD4PHF8KDM5AEHMT2KDM1AASH2LNCOR1SKIHNF1ATFAP4SOX13HDAC1TBPEP300GATA3ARID3AFOXA2NR2F6TBX3ZNF24RXRAFOXA1ETV4CREMFOSL2HDAC2HNRNPUL1CEBPBJUNDTCF12HNF4ARAD21GATA4ETS1SP1SMARCC2SMARCE1TCF7MAFKCHD4HNF4GZBTB40RBFOX2FOXA2
SPTLC3GH20J013099-20:13099540:T:C0.7983Enhancer99-Distancechr20:13099013-13099764ENSR20_977DG
GATA3FOXA1KDM1AFOXA2CTBP1GATA3DPF2SMARCE1
SPTLC3GH20J013100-None0.0000Enhancer82-Distancechr20:13099813-13099983ENSR20_977DG
CTBP1GATA3DPF2SMARCE1
SPTLC3GH20J013107-20:13107604:AC:A0.0670Enhancer9-C-HiC,Distancechr20:13107432-13107792--
SPTLC3GH20J013119-20:13119678:T:C0.1230Enhancer204-Distancechr20:13119633-13119783ENSR20_977L8, ENSR20_554BLC
CTCFTCF7SMC3NBNRAD21XRCC5ZNF143TRIM22PCBP2FOXA1RESTZNF444ZNF24FOXA2CREB1RBM22ARID3ARB1YY1RUNX3BATFPOLR2ASMARCA5NCOR1
SPTLC3GH20J013161-None0.0000Enhancer6-Distancechr20:13161630-13161634--