GWAS Annotated Elements: SPTLC3

Gene: serine palmitoyltransferase long chain base subunit 3

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH20J012965 - 20:12965680:G:A 1.6384 Enhancer - C-HiC,Distance chr20:12965656-12966306
FOSCTCF
GH20J012966 - None 0.0000 Enhancer - C-HiC,Distance chr20:12966572-12966722
CTCFSMC3RAD21TRIM22
GH20J012970 - None 0.0000 Enhancer - C-HiC,Distance chr20:12970392-12970542
CTCFRAD21KDM1ASKISMC3TRIM22JUNDZNF384
GH20J012976 - 20:12976939:G:C 1.5865 Enhancer Elite eQTLs,C-HiC,Distance chr20:12976540-12978366
KDM5APOLR2GSKINR2F6SP1RXRAFOXA1HNF4AFOXA2EP300HDAC2JUNDXRCC5RAD21ELF1HNF4GLCORLTFAP4ARID3AASH2LEHMT2HNRNPKGATA3HDAC1CEBPBFOXA1RBFOX2HNRNPLNR2F6KDM1AZBTB33HNRNPUL1MAXRESTETV4ELF1EGR1SKIHNF4GSOX13GATA4HDAC2NR2F2RXRASP1JUNDLCORLCREMHNF1AHNF4AFOXA2ARID3AFOXA1EP300NCOR1ZNF384NFE2L2CEBPBTCF7MAFFMAFKHNRNPK
GH20J012979 - 20:12979237:A:G 0.6169 Enhancer Elite eQTLs,C-HiC,Distance chr20:12979003-12979438
MAFKASH2LETV4CREMFOXK2GATA3HNF1ANR2F6FOXA1SP1EHMT2RXRAFOXA2TCF7RAD21HNF4GSOX13HDAC2FOSL2KDM1AARID3AHNF4AJUNDSMC3CEBPBGATA4EP300
GH20J012984 - 20:12985441:T:G 0.6253 Enhancer - eQTLs,C-HiC,Distance chr20:12984194-12985495
MYCCEBPBSTAT3FOS
GH20J012994 - None 0.0000 Enhancer - Distance chr20:12994835-12994906
ZBTB40GABPA
GH20J013008 - 20:13008574:AACTT:A 1.3662 Promoter/Enhancer Elite eQTLs,Distance chr20:13008545-13011800
ASH2LMAXHNF4APOLR2ARAD21SP1RXRAEGR1KDM1ARESTTAF1POLR2GSIN3BTBPCTCFRFX1EP300GATA3ZNF217JUNDHDAC2YY1KDM5ARAD21SMC3CHD4MTA3MEF2BNFICNFATC3ZNF217ATF2ATF3RCOR1IKZF1BMI1GATAD2BEP300JUNBRXRAMXI1SP1SMAD1IKZF2RELBPOU2F2TCF12DPF2ELF1ATF7SPI1TBX21BCL11ACREMMEF2ARESTMAFFRUNX3PAX5MAFKCREB1BATFEEDFOSNFYBMTA2IRF4RFX5BHLHE40STAT3NBNJUNDCEBPBSIN3ARBFOX2FOXA1FOXA2ARID3A
GH20J013016 - 20:13016831:A:G 1.2921 Enhancer - eQTLs,Distance chr20:13016771-13018132
RBFOX2BHLHE40USF1FOSZNF24ATF7JUNDCEBPBCTCFTCF12RESTSP1
GH20J013022 - None 0.0000 Enhancer - Distance chr20:13022832-13022982
FOSNBN
GH20J013027 - 20:13028169:C:T 0.9374 Enhancer Elite eQTLs,Distance chr20:13027788-13031254
MYCCEBPBFOSSTAT3MAFKMAFFRBFOX2SIN3ATCF12BCL3MNTATF3PKNOX1JUNDZHX2FOSCREB1NR3C1ZNF24EP300DPF2FOSL2STAT3MYCSMARCE1SP1JUNCEBPBBHLHE40ZBTB40
GH20J013034 - 20:13035327:T:G 0.8928 Enhancer - eQTLs,C-HiC,Distance chr20:13034930-13036469
NBNSP1ATF7JUNDCEBPB
GH20J013054 - 20:13055688:A:G 1.7713 Enhancer Elite eQTLs,C-HiC,eRNA_co-expression,Distance chr20:13054450-13056246
FOXK2
GH20J013059 - 20:13059564:T:C 0.7280 Enhancer Elite eQTLs,Distance chr20:13059372-13059582
HDAC1ASH2LEHMT2KDM1AHDAC2NR2F6CREMNCOR1HNF1AMAFFPRPF4MAFKEP300RAD21XRCC5TCF12CTCFPOLR2A
GH20J013067 - 20:13067915:A:G 2.3156 Enhancer - eQTLs,Distance chr20:13067723-13069200
GATA3RXRA
GH20J013089 - 20:13089773:G:A 1.6084 Enhancer - eQTLs,C-HiC,Distance chr20:13089250-13090722
ETV4CHD4PHF8KDM5AEHMT2KDM1AASH2LNCOR1SKIHNF1ATFAP4SOX13HDAC1TBPEP300GATA3ARID3AFOXA2NR2F6TBX3ZNF24RXRAFOXA1ETV4CREMFOSL2HDAC2HNRNPUL1CEBPBJUNDTCF12HNF4ARAD21GATA4ETS1SP1SMARCC2SMARCE1TCF7MAFKCHD4HNF4GZBTB40RBFOX2FOXA2
GH20J013099 - 20:13099540:T:C 0.7983 Enhancer - Distance chr20:13099013-13099764
GATA3FOXA1KDM1AFOXA2CTBP1GATA3DPF2SMARCE1
GH20J013100 - None 0.0000 Enhancer - Distance chr20:13099813-13099983
CTBP1GATA3DPF2SMARCE1
GH20J013107 - 20:13107604:AC:A 0.0670 Enhancer - C-HiC,Distance chr20:13107432-13107792 -
GH20J013119 - 20:13119678:T:C 0.1230 Enhancer - Distance chr20:13119633-13119783
CTCFTCF7SMC3NBNRAD21XRCC5ZNF143TRIM22PCBP2FOXA1RESTZNF444ZNF24FOXA2CREB1RBM22ARID3ARB1YY1RUNX3BATFPOLR2ASMARCA5NCOR1
GH20J013161 - None 0.0000 Enhancer - Distance chr20:13161630-13161634 -