GWAS Annotated: SRGAP1

Gene: SLIT-ROBO Rho GTPase activating protein 1

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
SRGAP1GH12J063842-12:63844946:T:C0.8413Promoter/Enhancer574EliteDistancechr12:63842944-63847322ENSR12_9XC78, ENSR12_9XC7H, ENSR12_BGN4T, ENSR12_C8C3H, SRGAP1_1, SRGAP1_2, SRGAP1_3
CREB1IKZF1HDAC2TCF12PHF8CTCFPOLR2GEGR1POLR2AZNF217PKNOX1NFYBRBM25YY1ZNF316RBFOX2DPF2EP300ELK1ESRRAELF1RBM39ARID3ASP1TAF1GATAD2BRUNX1MTA1RFX1NRF1TRIM28HNRNPLLPBX3SMC3MNTBACH1SKILCTBP1L3MBTL2JUNNFXL1RAD21MTA3SIN3BSIN3AHCFC1ATF7FIP1L1KDM5AZBTB33UBTFASH2LZNF282SOX6HNRNPKMXI1ATF2U2AF1HNRNPLRCOR1MYCTFAP4RUNX3RFX5ETS1GMEB1RB1ZSCAN29ZNF207RNF2ZFXTRIM22ATF3CUX1FUSZNF24AGO1STAT1RXRABHLHE40SKITAF7SMARCA4ZNF512BMAXNR3C1SAFBSMARCA5CREMZNF444PAX5ZNF579E2F6TBPZNF592GATA3CREB1ZBTB7AJUNDARNTXRCC5GABPARESTFOXA1ZNF143IRF4TAF15FOSL2SP1ARID2SRFCHD1CLOCKCBX1MBD2KDM4ARBM15DPF2ZNF263HDAC1RBBP5POLR2GIKZF1EBF1MEF2BZNF444CLOCKEP300GATA3RAD21MNTMYCRESTTFAP4ELF1SMC3ZNF217SP1MXI1SAP30KDM4ATCF12SIN3ACTCFSPI1RAD21SMC3FOXA1EZH2CREMKDM1ASIN3AGABPATBX3FOXA1POLR2ATBPARID3ASOX13EP300FOXA2HDAC2CTCFNR3C1STAT3FOSRAD21TAF1SMC3MXI1YY1MYCPKNOX1RAD21BCL3RESTELF1CEBPB
SRGAP1GH12J063848-12:63848638:G:C0.8072Enhancer91-Distancechr12:63848600-63848800--
SRGAP1GH12J063860-12:63862606:C:G0.8288Enhancer269EliteDistancechr12:63860751-63864853ENSR12_75QDK5, ENSR12_BGN7D, ENSR12_5K2KCB
FOSCEBPBZFXYY1RAD21ZNF687EGR1ZHX2GABPARAD51ARID3ARXRARESTATF3DPF2SP1SIN3AFOSZNF592ZBTB33JUNDNFIBELF1HNF4GZNF217ETS1ESR1GATAD2BTCF12GATA3ZNF579POLR2ACREB1NCOA3TBPFOXA1RCOR1HNF4AMNTNR3C1ESRRAFOSL2CTBP1ATF7PKNOX1SMARCE1BCL3RFX5EP300FOXA2SMC3TCF7L2NANOGGATA3FOXA1L3MBTL2PKNOX1FOSCEBPBSTAT3CTBP1PKNOX1
SRGAP1GH12J063865-12:63865479:T:C0.2631Enhancer1-Distancechr12:63865440-63865750--
SRGAP1GH12J063882-None0.0000Enhancer126-Distancechr12:63882920-63883070ENSR12_9XCLM
RCOR1PKNOX1MXI1USF2ZEB1TCF12USF1SMARCA4
SRGAP1GH12J063885-None0.0000Enhancer36-Distancechr12:63885145-63885932--
SRGAP1GH12J063888-12:63889163:C:T1.1757Enhancer173-Distancechr12:63888709-63890612ENSR12_9XCNJ
NR3C1FOXA1FOSL2FOSJUNDKDM1ASIN3ATCF12NR2F6ZBTB33ZNF384CEBPBSP1ASH2LHNF4ACREMJUNDYY1RAD21NR3C1POLR2AFOXA1EGR1RESTFOXA2RXRAHNF1ADPF2
SRGAP1GH12J063897-12:63897686:C:T1.2119Enhancer188EliteDistancechr12:63897454-63898496ENSR12_9XCR3
GATA1DPF2NCOR1TCF12IKZF1MAFKTAL1TEAD4SP1C11orf30POLR2AARID1BZNF316CBFA2T3RAD21YY1FOSTAF1
SRGAP1GH12J063900-12:63902053:G:A0.5615Enhancer178-Distancechr12:63900993-63902850ENSR12_BGNDZ
SREBF1YY1POLR2ARAD21RESTFOXA1RXRASP1FOXA2HNF4AZNF579JUNDCHD1HCFC1CREB1GATA3ZNF592ZNF687ZHX2CUX1NFIBATF7GATAD2BFOSMYCMAFKFOXA2DPF2FOXA1MBD2BMI1NR3C1CTBP1ZNF217ZNF24NCOA3JUNTCF12FOSL2SMARCE1PKNOX1NEUROD1SMARCA5
SRGAP1GH12J063905-12:63905266:A:T0.2431Enhancer144EliteDistancechr12:63905002-63906145ENSR12_9XCT8
FOSNR3C1TRIM28FOS
SRGAP1GH12J063911-12:63912547:G:A0.3850Enhancer71-Distancechr12:63911365-63913016ENSR12_83TPST
RESTCTCFZNF384
SRGAP1GH12J063913-12:63916303:G:A1.1118Enhancer455EliteeRNA_co-expression,Distancechr12:63913084-63923701ENSR12_BGNH2, ENSR12_83TQ3K, ENSR12_BGNJ3
ZNF384HNF4ATCF7L2ZNF316TCF12PKNOX1FOXA1ARNTSP1MAFKESR1RFX1MAFFFOSPOLR2ARAD21FOSRUNX3GATA2GATA3ESR1CEBPBMAFKFOSL2STAT3FOSFOXA1POLR2AZNF316MAFKMNTZNF687TAF1MYCFOXK2EP300SIN3ATBPSMARCC2SP1YY1CEBPBCREMZBTB33TCF12ATF7CTCFSIX5CREB1CUX1LCORLGATA3FOXA1JUNDTBL1XR1SKIFOSL2ELF1FOXA2ARID3AZBTB40ETS1TCF7RESTFOSNEUROD1BCL3RCOR1TCF7L2ZNF384NCOA3DPF2ZNF444JUNSMC3TBX3NFE2L2KDM1ASMARCE1NR3C1STAT3ZNF24GABPARXRAMAFFNR2F6RAD21ATF3ETV4CTBP1NCOR1ESRRARFX5ZNF217ELK1SPI1NFIBESR1SKILPKNOX1PAX5BHLHE40GABPAETS1ELF1RESTATF3ZBTB33ARID3AMNTJUNDFOXA2PAX8SP1BHLHE40TCF12FOXA1ZNF579ATF7FOXK2SMARCE1STAT3DPF2FOSL2ATF2NR3C1MYCJUNTBPCREB1FOSBCL3CTBP1LCORLZHX1PKNOX1CEBPBCTCFATF7FOSJUNDGATA2GATA3NCOA3RCOR1GATA3CEBPB
SRGAP1GH12J063930-12:63932048:C:T0.4015Enhancer133EliteDistancechr12:63930192-63932104ENSR12_9XD5L
GATA3NFICSTAT3JUNDFOSCEBPBEP300
SRGAP1GH12J063934-12:63935212:A:G0.6092Enhancer1-Distancechr12:63934429-63935484-
FOSSTAT3
SRGAP1GH12J063937-None0.0000Enhancer63EliteDistancechr12:63937462-63938730-
SMARCA4GATA2MXI1USF1CEBPB
SRGAP1GH12J063940-12:63940402:TA:T0.1123Enhancer99-Distancechr12:63940200-63941000-
NR2F2RAD21GATA3RCOR1GATA2CTCFSMARCA4MAFKRAD21
SRGAP1GH12J063942-12:63943025:C:T0.3953Enhancer17-Distancechr12:63942986-63943137--
SRGAP1GH12J063949-12:63950064:C:A0.4295Enhancer153EliteDistancechr12:63949607-63950714ENSR12_83TQN5, ENSR12_5K35CW
EHMT2NR2F6CTCFSP1KDM1ARAD21EP300FOXA2HNF4AHNF4GGATA3
SRGAP1GH12J063955-None0.0000Enhancer283EliteDistancechr12:63955741-63956595ENSR12_9XDDR
POLR2ACTCFJUNDRAD21MAXSP1RXRARESTBHLHE40EP300NR3C1STAT3SPI1USF2FOXA1ATF3FOSCEBPBBATFMYCZNF384ZBTB40
SRGAP1GH12J063967-None0.0000Enhancer91-Distancechr12:63967440-63967590ENSR12_83TR38
EP300MAFKZNF316FOSJUNDFOSL2MAFF
SRGAP1GH12J063977-12:63977355:G:A0.8779Enhancer162-Distancechr12:63977136-63979310ENSR12_BGNS7
C11orf30MAFKMAFFZNF316MAFKZBTB40TBPSP1DPF2MNTJUNDCEBPBMAFKGATA3FOSL2FOSSTAT3CREB1BHLHE40CUX1MYCMAFFZNF24NFE2L2NFIBSMARCE1
SRGAP1GH12J063982-12:63983042:G:A0.3435Enhancer1-Distancechr12:63982654-63983170ENSR12_BGNSR-
SRGAP1GH12J063983-None0.0000Enhancer56-Distancechr12:63983320-63983470ENSR12_BGNSR
FOS
SRGAP1GH12J063988-12:63989729:A:G0.6018Enhancer36-Distancechr12:63988379-63989961ENSR12_BGNTQ
RAD21TBPCTCF
SRGAP1GH12J063992-None0.0000Enhancer1-Distancechr12:63992500-63992650ENSR12_9XDRD
FOSSTAT3
SRGAP1GH12J063994-12:63994904:A:G0.6293Enhancer71-Distancechr12:63994340-63995470ENSR12_9XDS2
TAF1RCOR1RAD21STAT3
SRGAP1GH12J064004-None0.0000Enhancer1-Distancechr12:64004740-64004890ENSR12_83TRSS-
SRGAP1GH12J064005-12:64011191:T:TA0.9666Enhancer166-eQTLs,Distancechr12:64005753-64011303ENSR12_BGNZ6, ENSR12_9XDXS, ENSR12_BGNZP
BHLHE40MAFKCEBPBGATA3JUNDIKZF1IKZF2BHLHE40SKILZNF384BATFZNF217ATF7C11orf30FOXA1DPF2FOXA2CTCFPKNOX1MAFKFOSL2FOSEP300BACH1GATA3NFE2L2NFE2JUNDRAD21MBD2NCOA3BHLHE40JUNRCOR1CLOCKCREB1BATFSMARCE1CTBP1ZNF579SRFSPI1
SRGAP1GH12J064020-None0.0000Enhancer11-Distancechr12:64020943-64020956--
SRGAP1GH12J064028-12:64028902:A:G1.1731Enhancer1-Distancechr12:64028649-64029676ENSR12_9XF6Z
ESR1
SRGAP1GH12J064038-12:64039952:C:A0.6330Enhancer144EliteeQTLs,Distancechr12:64038923-64040390ENSR12_BGP5Z
RAD21CTCFTCF7L2USF2NR2F2MYCSP1TCF12USF1FOXA1TFAP4
SRGAP1GH12J064042-12:64043228:G:A0.0085Enhancer1-Distancechr12:64042537-64043641-
ATF4CEBPB
SRGAP1GH12J064064-12:64064705:G:C0.0787Enhancer56-Distancechr12:64064618-64065332-
RAD51MITFFOXA1
SRGAP1GH12J064065-12:64066034:GT:G0.5447Enhancer1-eQTLs,Distancechr12:64065526-64067000--
SRGAP1GH12J064079-12:64081779:T:TA0.7581Enhancer228EliteDistancechr12:64079733-64082002ENSR12_C8CNG
BHLHE40TCF12SIN3AZBTB7BCHD1ZNF579FOXA1ELF1NFIBZNF217CLOCKNR3C1MBD2DPF2CREB1NCOA3CUX1GATAD2BJUNDGATA3RCOR1CTBP1NANOGZNF512BRAD51ZNF24SMARCE1EP300NEUROD1RFX5SMARCA5FOSCREB1NCOA3NEUROD1CTBP1ESR1
SRGAP1GH12J064082-12:64082692:C:T0.8181Enhancer306EliteDistancechr12:64082082-64084269ENSR12_C8CNN
POLR2ATCF7L2YY1MAXHNF4AMXI1L3MBTL2SP1RCOR1FOXA1NFIBZNF687MYCRAD21RXRAPKNOX1NR2F2ZBTB33EP300USF1FOSCEBPBCREB1ATF2ATF7GATA3
SRGAP1GH12J064085-12:64090253:T:C0.5293Enhancer397EliteeQTLs,eRNA_co-expression,Distancechr12:64085485-64090701ENSR12_9XFRG, ENSR12_C8CP3, ENSR12_83TTN8
ATF3ATF7CEBPBATF4EP300POLR2ATAF1CTBP1YY1RAD21MXI1SP1POLR2AELF1ATF7EP300MNTJUNDATF3ZNF217USF2FOSJUNGATA3CEBPBDPF2SIN3AMITFTEAD4SPI1STAT3BCL3GABPAESR1SREBF1TBPZHX1FOSL2RESTBHLHE40FOSL1USF1MYCNR3C1SMARCE1MAFFCHD1GATA2RCOR1PRDM10TCF12SMARCA5FOXA1NFE2L2MAFKZHX1
SRGAP1GH12J064097-12:64097222:GT:G0.9469Enhancer222EliteDistancechr12:64097100-64100215ENSR12_75QQN4, ENSR12_C8CPR
STAT3JUNDFOSRAD21MYCRAD21FOSTCF7L2EP300JUNDFOSL2STAT3RAD21FOSMAFKBHLHE40
SRGAP1GH12J064101-None0.0000Enhancer36-Distancechr12:64101140-64101836ENSR12_BGPGX
SPI1
SRGAP1GH12J064104-12:64105159:T:C0.6615Enhancer36-eQTLs,Distancechr12:64104145-64105831ENSR12_BGPHC
EP300STAT3USF1CTCFJUNDPOLR2AEP300FOSNR3C1MYCMYCFOS
SRGAP1GH12J064130-None0.0000Enhancer57-Distancechr12:64130535-64130655-
CREB1
SRGAP1GH12J064137-None0.0000Enhancer56-Distancechr12:64137120-64137270-
MNTCREB1ATF7ATF2
SRGAP1GH12J064150-12:64151150:C:T0.3567Enhancer57-eQTLs,eRNA_co-expression,Distancechr12:64150931-64151286--
SRGAP1GH12J064152-None0.0000Enhancer9-Distancechr12:64152908-64152929--
SRGAP1GH12J064159-12:64161318:T:C0.4508Enhancer215EliteeQTLs,Distancechr12:64159715-64161450ENSR12_BGPRH
FOSPOLR2AFOSTRIM24STAT3CEBPBATF4
SRGAP1GH12J064169-12:64169979:G:A0.6194Enhancer245EliteeQTLschr12:64169811-64173492ENSR12_9XGNQ, ENSR12_9XGP9
POLR2AGATA3STAT3FOSFOXA1POLR2AJUNDFOSMYCSTAT3PCBP2HNRNPKZNF263RXRAGATA3
SRGAP1GH12J064403-12:64404338:C:G0.5279Promoter/Enhancer436EliteTF_co-expressionchr12:64403280-64406288ENSR12_BGR4P, ENSR12_5K627W, ENSR12_83W5F2, ENSR12_C8DJX, ENSR12_5K62D3
ATF3MEIS2ATF4FOXA1MNTFOXA2EP300MLLT1SMARCE1ZBTB11ZNF592MGATAF1PKNOX1RBFOX2ZNF687STAT5APOLR2AASH2LTAF7MNTE2F1ATF7PHF8RESTYY1POLR2GRAD51EP300FOXK2NRF1SMAD5CBFBCREB1ATF2JUNDMXI1GABPB1TEAD4CREMELF4XRCC5SMAD1MAXTBPSP1TCF12TCF7L2POU2F2MBD2ATF3SIN3AGABPAMEIS2ZNF143IRF1KDM5BFOSCBX1TAL1L3MBTL2SOX6ZBTB40ETV4ESRRATRIM22GMEB1HDAC1MTA1USF2ZBTB2HCFC1RFX5ELF1SETDB1CTCFIKZF1MYCZHX2ELK1AFF1EGR1CREB3L1NCOA6GATAD2BETS1ZKSCAN1CUX1BHLHE40ZNF24ARNTIRF2FOXA1FOSL2ZNF217USF1CTBP1BCL3ESR1RUNX3SUZ12JUNPAX5THAP1E4F1ATF3SIX5KLF5HNRNPLLZBTB7AMAFKBACH1RFX1E2F6DPF2SMARCA5MEF2ASKIMAFFSKILARID3ASMARCE1HNRNPLRB1TAF15NFE2RAD21ZSCAN29AGO1U2AF1PHF8C11orf30IKZF2FUSPCBP1HNRNPUL1EP400RBM34ZFXAGO2SAP30SMC3PRPF4FIP1L1SREBF1NFRKBNEUROD1NBNKDM4APHF20CHD1RBBP5ZNF639ZNF282MIER1ZNF512BUBTFHDAC2RBM14ZBTB1RNF2NCOR1CLOCKZNF687RBM39ZBTB7BZNF444ZNF263ZNF24ELF4MBD2NFICGATAD2BTFAP4RESTTAF9BMLLT1TAF7ATF4SMARCA4HNRNPKTEAD4RUNX3L3MBTL2YY1SRSF7MGABRD4E2F8KDM1AEGR1HDAC1BRD9SP1CREB3L1ATF3TCF12GATA3ZBED1RBM22KDM4BGATA4NR3C1E4F1MYCTAF1ATF7MAXJUNDSOX6NEUROD1NRF1TRIM24E2F6ELF1MITFESRRAHES1TRIM28NFATC3AFF1GABPATBPIRF2ARNTKDM5AZNF217CEBPBZBTB7AJUNZNF318ATF2USF1MTA3HMBOX1TBL1XR1RAD51SMAD1ZNF574FOSL1ZNF143HDAC3ZBTB40NFRKBNR2C1ZZZ3KDM5BZNF592MLLT1ZBTB33ZSCAN29TBPZNF384MNTTCF12SOX6SMARCE1ZBTB40ZNF639C11orf30EGR1POLR2GKDM1ACTCFBCORHDAC2RB1MITFSMARCA4
SRGAP1GH12J064521-12:64522511:C:T0.4774Enhancer218EliteeQTLschr12:64521961-64523225ENSR12_BGRPT, ENSR12_83W7XN
IKZF2SMARCA4TRIM24NR2F2NR2F6CEBPBMAXHES1EGR1NR2F1BHLHE40ATF3ATF4RUNX3JUNDBACH1MAFKMAFFNFE2NFE2L2C11orf30ZNF316