GWAS Annotated: TMEM260

Gene: transmembrane protein 260

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
TMEM260GH14J056216-14:56217402:G:C0.5938Enhancer277EliteTF_co-expressionchr14:56216425-56217465ENSR14_C7KLL
TRIM28ZNF592MEIS2NFIBNFICFOXK2C11orf30ZNF316CDC5LNFATC3RBFOX2POLR2APMLKDM5BTBPHNRNPLMEF2APOLR2GTAF7SMAD5ZBTB7AZBTB2HNRNPUL1MAXTAL1ZNF263NFXL1CTCFPKNOX1RAD21
TMEM260GH14J056378-14:56379292:T:G1.2629Enhancer218EliteDistancechr14:56378058-56379399ENSR14_9SD79
POLR2ASTAT3GATA2EP300MYCFOSRAD21MAFKMAFFCEBPB
TMEM260GH14J056412-14:56412926:T:A1.4655Enhancer118EliteDistancechr14:56412600-56413012ENSR14_BF79K
POLR2AGATA2FOSCTCF
TMEM260GH14J056422-14:56422630:TA:T1.6106Enhancer192EliteDistancechr14:56422262-56423189ENSR14_BF7C2, ENSR14_5H9BNL
CTCFRAD21SMC3EP300RESTCEBPBDACH1TFAP4TEAD4TRIM22ZNF143USF1YY1
TMEM260GH14J056423-None0.0000Enhancer117-Distancechr14:56423592-56423936ENSR14_BF7C6
L3MBTL2ZFX
TMEM260GH14J056487-14:56487420:C:T0.4529Enhancer71-Distancechr14:56487382-56487432-
CTCFRAD21SMC3
TMEM260GH14J056488-14:56487677:A:T1.7470Enhancer56-Distancechr14:56487542-56487692ENSR14_BF7NF
CTCF
TMEM260GH14J056489-14:56488111:T:C0.7947Enhancer71-Distancechr14:56487842-56488112ENSR14_BF7NF
CEBPBFOSSPI1MYCUSF2
TMEM260GH14J056491-14:56491529:C:T0.5677Enhancer208EliteDistancechr14:56491399-56491601ENSR14_9SFDW, ENSR14_5H9QGQ
CTCFMNTSIN3AMXI1EP300MAXSMC3MYCRAD21SMARCA4TRIM22CREB1YY1HDAC2RUNX3JUNDZNF143RESTRFX1
TMEM260GH14J056513-14:56513836:C:T1.2316Enhancer63-Distancechr14:56513836-56514311--
TMEM260GH14J056525-None0.0000Enhancer1-Distancechr14:56525062-56525212-
EP300
TMEM260GH14J056542-14:56543031:A:G1.0783Enhancer6-Distancechr14:56542874-56543218--
TMEM260GH14J056556-None0.0000Enhancer193-Distancechr14:56556062-56556192ENSR14_9SG4L
CTCFYY1RESTSP1FOXA1CTBP1JUNDZNF217GATA3RAD21RXRAEP400ATF3FOXA2ATF7SMC3ZEB2FOXK2HNF4ACEBPBMAXATF4TRIM22BRD9SOX6EP300ZNF143SMARCA4ATF2TRIM24ZNF384L3MBTL2CREB3L1MYC
TMEM260GH14J056571-14:56571893:C:G0.7625Enhancer13-eQTLs,Distancechr14:56571727-56572005-
ZNF384
TMEM260GH14J056578-14:56580632:C:G0.6323Promoter/Enhancer635EliteeQTLs,eRNA_co-expression,Distancechr14:56578942-56581340ENSR14_BF86P, TMEM260_1
ZBTB33CTCFRBM39ZNF384NRF1KDM5AZHX2SMC3CREMTCF7L2ZBTB33YY1STAT3MNTTRIM22NBNSIN3ARAD21ZBTB40PRDM10MAFKMAXMYCGABPAZNF444CBFBFOXA1HCFC1SP1CHAMP1ZNF143ZNF263ATF7NR2F2MTA2CC2D1ASPI1CREB1GMEB1RUNX3NR2C1GATA3ASH2LHNF4AC11orf30BRD4SKILRELBAFF1NFICARNTKLF5MIER1ELF1CLOCKZNF574ZNF579FOXM1ETV4XRCC5MLLT1EP300FOXK2ATF3JUNBNFATC3PKNOX1TBPE2F8ARID3AZNF217BHLHE40CHD1POU2F2SIX5E4F1ZBTB5STAT1SMARCE1KDM4BESRRAZNF207TCF12ELF4E2F1HDAC1ETV6JUNIRF3EP400ZNF24EGR1MAFFGATAD2BRNF2JUNDRBFOX2PCBP1ZBTB7BSREBF1ELK1CTBP1POLR2AASH1LRFX5MEF2CSKIFIP1L1TBX21SREBF2BRCA1USF1PMLSIN3BMBD2CREB3L1GABPB1POLR2GMXI1IKZF1PRPF4TAF1TAF15SMAD5RB1PHF8EEDMAFKETS1ZFXU2AF1FUSDPF2GATA4HNRNPLHNRNPLLTAF7BACH1MTA3RESTRBBP5HDAC6LEF1RFX1RB1SPI1KDM5BZNF687PHF20AGO2KDM4AZBTB7AGATA1SAP30RUNX3SPI1MTA2FOXA2POLR2AATF3JUNDFOSTBX21RELBSKILMEIS2MTA2BMI1IKZF1RUNX3CREMDPF2BATFSPI1IKZF2JUNBTCF7
TMEM260GH14J056584-14:56585246:CTTA:C0.3283Enhancer98-Distancechr14:56584833-56585255-
TRIM28
TMEM260GH14J056590-14:56590548:C:T0.2898Enhancer226-Distancechr14:56590253-56590886ENSR14_83MWXC
SMARCA4PKNOX1TRIM28CTCFGATA2RCOR1EP300SMARCA4SIX5RAD21
TMEM260GH14J056608-None0.0000Enhancer154-Distancechr14:56608842-56608932-
GATA1EP400L3MBTL2SMARCA4ATF3ATF4SOX6ATF7TCF12RXRAZNF318FOXM1STAT3ATF2HNF4AMEIS2ZEB2TBPTEAD4FOSEP300ARID1BTRIM24CEBPBJUNDGATA3TAL1FOXA1HMBOX1
TMEM260GH14J056648-14:56648268:T:TG0.2128Enhancer56-Distancechr14:56648102-56648781-
JUNDFOSL2CREB1
TMEM260GH14J056659-14:56659654:A:C0.7527Enhancer71-eQTLschr14:56659405-56659789-
EZH2CTCF
TMEM260GH14J056760-None0.0000Enhancer146-eRNA_co-expression,TF_co-expressionchr14:56760306-56760668-
PKNOX1
TMEM260GH14J056952-14:56953472:CT:C0.7726Enhancer304EliteTF_co-expressionchr14:56952289-56954727ENSR14_5HDNRN
CTCFSMC3