GWAS Annotated: TMTC1

Gene: transmembrane O-mannosyltransferase targeting cadherins 1

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
TMTC1GH12J029536-12:29537734:T:C0.1683Enhancer111-Distancechr12:29536947-29538176ENSR12_9FPJP
CEBPBFOSBHLHE40STAT3MAFKMAFFCEBPB
TMTC1GH12J029545-12:29546407:T:C0.3984Enhancer161EliteDistancechr12:29545552-29548656ENSR12_9FPM8, ENSR12_C4X6F
IKZF2EEDTBX21SMARCA5ZNF217MLLT1NBNCTCFBACH1MAFKRAD21BHLHE40POLR2ABHLHE40SP1USF2FOSFOXA2
TMTC1GH12J029552-None0.0000Enhancer111-Distancechr12:29552467-29552617ENSR12_8TGF6, ENSR12_58XNB9
CTCFSKILRAD21RESTSMC3ZNF143YY1RUNX3TRIM22
TMTC1GH12J029558-12:29558780:C:A1.4621Enhancer228EliteeQTLs,Distancechr12:29558262-29565402ENSR12_C4X7H
YY1NR2F2SP1ELF1RXRARAD21ZNF687HNF4AIKZF1MLLT1FOXA1EP300POLR2AGATA2EP300MAFFSP1NR2F2MAFKFOSJUNDRXRA
TMTC1GH12J029566-None0.0000Enhancer36-Distancechr12:29566547-29566697ENSR12_9FPT6-
TMTC1GH12J029567-None0.0000Enhancer1-Distancechr12:29567606-29567671--
TMTC1GH12J029568-12:29569012:C:T0.0678Enhancer56-eQTLs,Distancechr12:29568823-29569939ENSR12_9FPW2
IKZF1MEF2BEP300EBF1
TMTC1GH12J029577-12:29577648:A:G0.1384Enhancer36-Distancechr12:29577428-29578857-
NR2F2EP300SPI1
TMTC1GH12J029581-12:29582015:C:T0.2715Enhancer121-Distancechr12:29581398-29583457ENSR12_9FQ2J, ENSR12_9FQ2T
FOSBHLHE40RAD21NFE2L2EBF1YY1RAD21MAXSP1RXRARESTEP300FOXA2JUNDATF3HNF4A
TMTC1GH12J029588-12:29588895:T:C1.3363Enhancer1-eQTLs,Distancechr12:29588887-29590468ENSR12_9FQ4R, ENSR12_8TH7T
USF2USF1CTCF
TMTC1GH12J029590-12:29591275:C:T0.1905Enhancer178EliteDistancechr12:29590727-29592004ENSR12_B7TK6
CTCFYY1EP300NFYBGATAD2BSP1IKZF1RAD21ASH2LRXRARESTMLLT1MAXHNF4ABACH1MAFKCHD7NANOGCEBPB
TMTC1GH12J029612-12:29612159:C:T0.1481Enhancer1-Distancechr12:29612047-29612193ENSR12_9FQCB
EP300ZNF687MYCSTAT3FOSUSF2CTCFRAD21
TMTC1GH12J029616-12:29617552:G:C0.8048Enhancer71-eQTLs,C-HiC,Distancechr12:29616299-29618199ENSR12_9FQDR
TBPFOSJUNDBHLHE40PKNOX1
TMTC1GH12J029625-12:29625102:G:A0.5478Enhancer71-Distancechr12:29625074-29625465ENSR12_B7TQ4
EP300GATA3RB1RELBIKZF1MXI1GATAD2B
TMTC1GH12J029639-12:29640338:AG:A1.9647Enhancer310EliteeQTLs,Distancechr12:29639910-29641616ENSR12_B7TSC, ENSR12_58Z8J4
MAXCTCFSMARCA4YY1RAD21POLR2GHNF4ASP1RXRAL3MBTL2HDAC1ZFXPOLR2AATF3JUNDIKZF1RFX1KLF16FOSC11orf30RESTBACH1NFE2L2EGR1MAFKNFE2CC2D1AZNF316ZHX2CTCF
TMTC1GH12J029691-12:29691134:C:A0.0741Enhancer276EliteeQTLs,Distancechr12:29691033-29691888ENSR12_9FR79
SMARCA5DPF2NBNMTA2TRIM22IKZF1IKZF2SMAD1TBX21ELF1EBF1ZNF207BCL11ASTAT3PKNOX1EP300ZNF384SPI1
TMTC1GH12J029706-12:29707255:G:T0.3434Enhancer14-Distancechr12:29706953-29707319--
TMTC1GH12J029709-12:29710676:T:A0.7546Enhancer144EliteDistancechr12:29709788-29710897ENSR12_9FRDP
MYCMXI1RCOR1RAD21YY1NANOGSRF
TMTC1GH12J029713-12:29713212:C:A0.3388Enhancer195EliteDistancechr12:29712999-29713601ENSR12_B7W7R
FOSPOLR2ATBPMYCEP300SPI1ATF2CEBPB
TMTC1GH12J029725-12:29726617:T:C0.9797Enhancer208EliteDistancechr12:29725335-29726800ENSR12_B7W9N
TBX21ZNF592CEBPBPOLR2AMTA2CTCFZNF687MEF2BIKZF1ATF7GATAD2BTRIM28EP300RB1PAX5RELBCUX1NR3C1EBF1SMARCA4TCF12ZNF592CTCF
TMTC1GH12J029731-12:29731825:A:G0.1082Enhancer1-C-HiC,Distancechr12:29731767-29731917--
TMTC1GH12J029732-12:29732350:C:T0.1201Enhancer133EliteC-HiC,Distancechr12:29732347-29732497ENSR12_9FRM5
NFICGATA3NFIBGATA2
TMTC1GH12J029737-12:29738588:A:G1.5411Enhancer1-Distancechr12:29737700-29738867ENSR12_9FRNW-
TMTC1GH12J029739-12:29739135:T:G1.8426Enhancer310EliteeQTLs,Distancechr12:29739054-29745592ENSR12_9FRP6, ENSR12_B7WCW, ENSR12_B7WD8, ENSR12_8TLJ9
RCOR1CEBPBTRIM28POLR2AEP300CEBPBCTCFTBPSTAT3MYCJUNDFOSMAFKPKNOX1POLR2AFOSSTAT3MYCCEBPBPOLR2AGATA2MXI1EP300STAT3USF2SMARCA4BHLHE40CEBPBFOSMYC
TMTC1GH12J029756-12:29757291:C:T1.0177Enhancer56-Distancechr12:29756995-29757805-
FOXA2
TMTC1GH12J029768-12:29768510:G:A0.4397Enhancer178EliteeQTLs,Distancechr12:29768326-29769798ENSR12_9FS2S
HNF4AIKZF2GATAD2BIKZF1RELBTBX21EP300EBF1MTA2TCF12MYCFOSMAFKNFE2L2CEBPBMAFFEP300CTCF
TMTC1GH12J029771-None0.0000Enhancer63EliteDistancechr12:29771907-29772057--
TMTC1GH12J029781-12:29782546:G:A0.9674Promoter/Enhancer597EliteeQTLs,Distancechr12:29781276-29784811ENSR12_8TMD3, ENSR12_B7WL4, ENSR12_59262M, TMTC1_1
CTCFRAD21POLR2ARELBSKILIKZF1JUNBNFATC3ELF1IKZF2ZNF217ZNF687ATF7DPF2MTA2IRF4GABPAZNF207EP300RFX1FOSTCF12TRIM28MEF2ASIN3AJUNDTRIM22BATFPKNOX1RAD21YY1TBPEZH2CUX1MXI1STAT3CHD1SPI1C11orf30TBX21CEBPBPOLR2AMAFKBACH1MAFFEBF1NFE2L2SIN3AEZH2CTCFTAF1RBBP5BHLHE40PHF8CHD1HNF4ATBPMLLT1L3MBTL2KDM4AIKZF1ZFXZBTB33ZNF217MXI1GATAD2BBACH1SMC3ARNTTAF1SMARCA5EZH2HNRNPKNRF1TCF12ASH2LIKZF2RESTRAD21HNRNPLLKDM4AHDAC2SIN3AIKZF1SMC3ZNF263
TMTC1GH12J029818-None0.0000Enhancer1-C-HiCchr12:29818867-29819240ENSR12_9FSK8
EP300