GWAS Annotated: TOX3

Gene: TOX high mobility group box family member 3

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
TOX3GH16J052407-16:52407746:G:A1.0163Enhancer226-eQTLschr16:52407240-52408920-
EP300YY1ZBTB33NCOR1MAXRESTHNF4AARID3AHDAC1NR2F2RXRASP1GABPAKDM1AFOXA1HNF4GJUNDATF3FOSL2RAD21FOXA2CEBPBMNTASH2LSIN3ACCAR2XRCC5TFAP4SKIHNF1ATBX3ARID3AHDAC2GATA4SOX13TBL1XR1CREMNR2F6FOXK2BHLHE40TCF7FOSL2ELF1CREB1ZNF24ZNF384FOXP1ATF7ATMETV4CEBPBEP300LCORLZBTB40
TOX3GH16J052434-16:52435374:T:C0.5574Enhancer178-Distancechr16:52434616-52437850ENSR16_9QRXD, ENSR16_5GC22W
POLR2GRBM22FOSL2POLR2ARBM22EP300CTCFPOLR2GRAD21TFAP4SMARCA4RESTMAFFSMARCA4HNRNPKHNRNPUL1EP300RBM22SMARCA4
TOX3GH16J052452-16:52452157:A:G0.8526Enhancer189-eQTLs,Distancechr16:52452148-52452218-
EHMT2CTCFHDAC1PRPF4KDM1ASKIHNF4GHNRNPKHNRNPUL1TCF7NR2F6SP1HNF4ARXRAHNF1AFOXK2FOXA2TFAP4FOXP1ARID3ACREMFOXA1SOX13TBX3CHD4
TOX3GH16J052455-16:52456199:A:G0.1241Enhancer192-eQTLs,Distancechr16:52455741-52457098-
ZMYM3EHMT2CHD4NR2F6CREMSP1NCOR1TFAP4HDAC2JUNDSOX13FOXA2FOXA1PRPF4ZBTB7ARBM22TCF7KDM1AEP300LCORLFOSL2ASH2LCHD4
TOX3GH16J052460-None0.0000Enhancer63-Distancechr16:52460344-52460712--
TOX3GH16J052461-None0.0000Enhancer118-Distancechr16:52460734-52461101-
EP300
TOX3GH16J052466-None0.0000Enhancer63-Distancechr16:52466032-52466265--
TOX3GH16J052467-None0.0000Enhancer98-Distancechr16:52467059-52467259-
FOXA1EP300
TOX3GH16J052469-16:52470313:C:T0.0852Enhancer105-eQTLs,Distancechr16:52469921-52471014ENSR16_83JMLK
FOSFOSL2JUNDJUNFOXA1SMARCA4CHD7CTCFRAD21NANOGRBM22
TOX3GH16J052488-None0.0000Enhancer229-Distancechr16:52488868-52489038-
ASH2LRESTZBTB33EGR1NR2F2JUNDGABPANCOR1CREMATF3HNF4ASP1RXRAMAFKMAFFSOX13TBL1XR1YY1ETS1NFE2L2NR2F6SMC3MNTTCF7HNF1AGATA4FOXA2FOSL2RAD21SIN3AARID3AEP300HDAC2HNF4GFOXA1LCORLKDM1AZBTB7ARBM22MAXCEBPBZNF384
TOX3GH16J052492-16:52493370:T:A1.4944Enhancer363EliteeRNA_co-expression,Distancechr16:52492468-52494403-
NBNASH2LMEF2BIKZF2MTA2KDM1ASKILMAXTRIM22ZBTB33EBF1TCF7ZNF384ATF7JUNDZNF217NR2F6BHLHE40CREMIKZF1ARID3AEGR1RELBEP300HNF4ADPF2ATF3SKINCOR1KLF5RESTTCF12HNF1ATBL1XR1SP1TBPSMC3RAD21TBX3GATA4FOXA2POLR2AGATAD2BFOXA1RXRAFOXP1HNF4GCHD4TBX21NFATC3YY1EHMT2FOSL2HDAC1TFAP4BATFHDAC2FOXK2RBM22ELF1AGO2RBFOX2POLR2GRBM22
TOX3GH16J052497-None0.0000Enhancer266EliteDistancechr16:52496288-52496438-
EP300TCF7L2KDM1AYY1ASH2LEHMT2TCF12SP1RESTFOXA2ZBTB33FUSATF3TBX3MAXCREMRAD21ETS1
TOX3GH16J052496-16:52496913:TA:T0.4054Enhancer492EliteDistancechr16:52496508-52498059ENSR16_BDFB4
EP300TCF7L2KDM1AYY1ASH2LEHMT2TCF12SP1RESTFOXA2ZBTB33FUSATF3TBX3MAXCREMRAD21ETS1ZNF24JUNDEGR1SOX13HDAC1RXRAFOXP1NCOR1HDAC2RCOR1TCF7TBL1XR1FOXA1MAFFTFAP4HNF4AFOSL2SMARCC2TBPELF1BHLHE40HNF4GLCORLHNF1ASMC3ZNF384SKINR2F6ARID3AKDM5AGATA4CEBPBKAT2BETV4RBFOX2HDAC6KDM1AFOXA1ARID3AFOSNFIBZNF263JUNDTFAP4RCOR1ETV4EP300
TOX3GH16J052498-None0.0000Enhancer98EliteDistancechr16:52498602-52499300ENSR16_83JN8B
ASH2LNANOGSMARCA4
TOX3GH16J052512-None0.0000Enhancer149-Distancechr16:52512230-52513311-
RBM22EHMT2KDM1AFOXA2EP300FOXA1HNF4GHNF4A
TOX3GH16J052517-None0.0000Enhancer125EliteDistancechr16:52517684-52518923--
TOX3GH16J052523-16:52524761:T:G0.5770Enhancer1-C-HiC,Distancechr16:52523493-52524873--
TOX3GH16J052526-16:52526219:G:A1.0031Enhancer36-C-HiC,Distancechr16:52526174-52527126-
SIN3ARBM22
TOX3GH16J052528-16:52528899:G:A1.8572Enhancer118EliteDistancechr16:52528128-52529085-
RBM22POLR2GEP300CTCFYY1RAD21
TOX3GH16J052531-None0.0000Enhancer118EliteDistancechr16:52529148-52529298-
RBM22POLR2GCTCFRAD21FOXA2FOXA1
TOX3GH16J052529-16:52529714:G:A0.5833Enhancer1-Distancechr16:52529452-52530244-
FOXA1
TOX3GH16J052530-16:52530405:C:G0.1101Enhancer54-eRNA_co-expression,Distancechr16:52530327-52530675--
TOX3GH16J052537-16:52537693:T:C0.5836Enhancer1-Distancechr16:52537525-52537893-
HNF4A
TOX3GH16J052544-16:52547135:C:G1.9867Promoter/Enhancer432EliteDistancechr16:52544617-52548880ENSR16_BDFK4, ENSR16_9QT5C, ENSR16_83JP96, ENSR16_9QT5M, ENSR16_9QT5Q, ENSR16_754FK9, ENSR16_5GCPDH
RBFOX2EZH2CREMCTCFKDM1ARESTKDM5AMXI1HDAC1HDAC2XRCC5EP300SIN3AFOXA1ZBTB7ASMC3EZH2ZNF263KDM4ARAD21RBBP5RBM39HNRNPLLASH2LHNRNPLAGO2SUZ12TAF1TFAP4PCBP1HNF4ARNF2HDAC2ZBTB7AAGO1SIN3AYY1PHF8PTBP1POLR2GAGO2RBBP5SMC3POLR2ATAF15MXI1FUSRAD21ZBTB7ATAF1POLR2GZBTB7ARBM39YY1PCBP1SUZ12ASH2LSIN3BTAF15HDAC2HNRNPLHNRNPLLEZH2AGO2RBBP5SKIZEB1SIN3AHDAC1POLR2GXRCC5ZNF263FOXA2HNF1APOLR2GSIN3ABHLHE40HDAC2RXRASMC3RAD21FOXA1ASH2LCHD4SP1NANOGCEBPBKDM5ARFX5KDM1ATFAP4NCOR1USF1CTCF
TOX3GH16J052549-16:52549142:G:T0.5849Enhancer137-Distancechr16:52549008-52549218ENSR16_9QT67
HDAC1SIN3AASH2LCHD4SP1KDM5AKDM1ANCOR1CTCFARID3AFOXA1ELF1SMC3RAD21YY1HDAC2
TOX3GH16J052556-None0.0000Enhancer56-Distancechr16:52556902-52558038-
POLR2AFOXA1FOSL2HNF1AGATA3NR3C1GATA4HNF4A
TOX3GH16J052558-16:52558939:AT:A0.0775Enhancer82-Distancechr16:52558322-52558944-
USF1
TOX3GH16J052560-None0.0000Enhancer56-Distancechr16:52559268-52559378-
NR2F6EP300FOXA1FOXA2
TOX3GH16J052559-None0.0000Enhancer36-Distancechr16:52559789-52560312-
SP1HNF4A
TOX3GH16J052561-16:52562272:G:A1.0021Enhancer267EliteDistancechr16:52561511-52563459-
HNF4ARAD21MAXYY1POLR2ATCF12JUNDRBM22CREMSP1ATF3NR2F6RESTFOXA2HNF1AETV4FOXK2XRCC5EP300TCF7TBX3HDAC2RXRAFOXA1NR3C1FOSL2TFAP4RXRAMAXFOXA1RAD21GABPAHNF4AFOXA2CEBPBCTCFETV4HNF1AFOXA1
TOX3GH16J052564-16:52565482:C:T2.0032Enhancer282EliteDistancechr16:52564104-52566293ENSR16_9QTBS
KDM1AZMYM3ASH2LTBPYY1TCF12TBX3FOXA2RESTKDM1ARXRAFOXA1SP1ZBTB33GABPAGATA3GATA4MAXZNF24JUNDHNRNPUL1ARID3ATCF7HNF4ACREMCCAR2HNF1ANR2F6NCOR1HNF4GEP300RAD21ATF3LCORLETV4FOSL2SKICTBP1TBL1XR1ZNF217DPF2SOX13TFAP4MAFFBHLHE40SMARCE1SMC3
TOX3GH16J052567-16:52567199:C:A0.2181Enhancer1-Distancechr16:52567009-52567625--
TOX3GH16J052568-16:52567869:T:A0.1348Enhancer1-Distancechr16:52567772-52568398--
TOX3GH16J052572-16:52572325:A:G2.0026Enhancer292EliteC-HiC,Distancechr16:52572242-52575108ENSR16_9QTFB
IKZF1MAFKSP1HNF4ACTCFCHD4HNRNPUL1KDM1AZMYM3TCF12SKICREMNR2F6IKZF1RESTASH2LSP1ATF3XRCC5HDAC2JUNDFOXA1EGR1ELF1GABPAPOLR2ARXRANCOR1FOXA2HNF1AGATA4MAXSMC3ARID3ASOX13SIN3ATBPBHLHE40RAD21ZHX2TCF7HNF4AIKZF2FOSL2ETV4PKNOX1EP300POLR2GEHMT2HNF4AHNF4GSMC3CHD4
TOX3GH16J052575-16:52575121:C:A0.2562Enhancer63EliteDistancechr16:52575111-52575248--
TOX3GH16J052577-16:52579125:G:A2.2268Enhancer408EliteDistancechr16:52577681-52579517-
FOXA1HDAC1TBPTCF12YY1CHD4NCOR1FOXA2ZNF384HDAC2ASH2LZBTB33FOXA1MAXSIN3AJUNDSKIRESTKDM1AARID3AZNF24TBL1XR1GABPATFAP4SP1RXRAFOSL2SOX13HNF1ANR2F2ETS1ATF3HNF4ABHLHE40CREMTBX3RAD21EP300ZHX2EGR1NR2F6FOXP1CEBPBUSF1TCF7CREB1HNF4GMNTGATA4TCF7FOXA1EP300ETV4