GWAS Annotated: TPH2

Gene: tryptophan hydroxylase 2

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
TPH2GH12J071780-12:71780329:A:G0.2846Enhancer111-C-HiCchr12:71780157-71781250ENSR12_933H8S, ENSR12_5LTT2N
CTCFRESTRAD21MIER1SMC3ELF1TRIM22E4F1ELF4ZNF143FOXA1ZBTB33
TPH2GH12J071782-None0.0000Enhancer71-C-HiCchr12:71782083-71782594-
IKZF1JUNBRUNX3BATFSPI1
TPH2GH12J071787-None0.0000Enhancer105-C-HiCchr12:71787720-71787870-
SMARCE1ARID1BHMBOX1NR2F2SPI1NR2F6EGR1
TPH2GH12J071799-None0.0000Enhancer1-C-HiCchr12:71799000-71799201ENSR12_933HG8
FOSYY1STAT3NR2F2EP300
TPH2GH12J071864-12:71865407:T:G0.9391Enhancer167EliteDistancechr12:71864679-71866705ENSR12_BJ947, ENSR12_5LWDNJ
CTCFEBF1JUNDSMC3RAD21HNF4A
TPH2GH12J071870-12:71870454:G:T0.1322Enhancer111-Distancechr12:71870200-71871000-
IKZF2IKZF1MTA2ATF2ATF7TBX21RUNX3ARID3AJUNBGABPASRF
TPH2GH12J071938-12:71938935:A:G0.9023Promoter/Enhancer386EliteDistancechr12:71938795-71938970ENSR12_8454W7, TPH2_1
RESTCTCFHDAC1GATA2ZNF263MIER1ATF4SIN3ACHD7ZBTB40ZSCAN29MTA2MNTGATA3NCOA1CHAMP1EHMT2SAP30NCOA6CBX3MITFMXI1XRCC5ETS1ZNF143RUNX3HDAC2NR2F2MYCRCOR1FOXK2ARID3ATEAD4TAF1TBL1XR1CC2D1AYY1CBX5CREMTFAP4ZNF184JUNDZNF24HCFC1BHLHE40USF2MAFKTCF12USF1ARID2MAXNANOGTAF7ELF1AFF1STAT3ZBTB7ASP1GABPAKLF16SMARCA4SMARCE1EP300ARNTKDM1ARAD21SMC3SPI1NR3C1ATF3EGR1DACH1RXRATRIM22SMARCA5
TPH2GH12J071946-12:71948164:T:TTTA0.4041Enhancer213-Distancechr12:71946700-71950256ENSR12_933K38
ASH2LCHD1GABPARBBP5YY1HNRNPLLRESTRXRAZBTB33SP1RAD21HNF4AEGR1MAXATF3HNF4GEP300FOXA1JUNDTAF1SKITBPARID3AFOXA2GATA3STAT3TFAP4ETV4TBL1XR1ZHX2CREB1ETS1FOXP1RCOR1ASH2LCEBPBHDAC2SOX13FOSL2NANOGSMC3MYCELF1RFX1TBX3SMARCA4FOSKDM1ASIN3ATCF12POLR2ATAF1CHD1FOXA1POLR2ATBPYY1CHD7MAFKFOXA1GATA3SP1NANOG
TPH2GH12J071957-12:71958763:T:C0.1356Enhancer91-Distancechr12:71957368-71959594ENSR12_BJ9KM, ENSR12_933K6J
HNF4AATF3GATA3JUNDESR1FOXA1NR3C1SP1ESR1RCOR1BHLHE40FOSGATA3
TPH2GH12J071972-12:71972867:G:A0.6961Enhancer99-C-HiC,Distancechr12:71972800-71972950ENSR12_8455LZ
NFIBCTCFNFICLCORLRAD21
TPH2GH12J072017-None0.0000Enhancer149-Distancechr12:72017160-72017310ENSR12_933KRB
CTCFZFXMAXSP1RAD21RESTSMC3RXRAHNF4GXRCC5ZNF444ZNF579TRIM22MXI1HNF4AEP300GATA3SMARCA5ZNF143RB1IRF4MYCPKNOX1SMARCA4FOXA1
TPH2GH12J072037-None0.0000Enhancer9-eRNA_co-expression,Distancechr12:72037030-72037197-
SMARCA4
TPH2GH12J072053-12:72054151:A:G0.4132Enhancer36-Distancechr12:72053145-72054764-
EP300
TPH2GH12J072072-12:72072400:G:A0.6585Enhancer36-Distancechr12:72072328-72073132ENSR12_8457QT
NFICNFIBSMARCA4STAT3FOS
TPH2GH12J072075-None0.0000Promoter129-Distancechr12:72075607-72075667TRHDE_3
NR2F2
TPH2GH12J072087-None0.0000Promoter94-Distancechr12:72087216-72087276TRHDE_2-
TPH2GH12J072088-None0.0000Enhancer21-eRNA_co-expression,Distancechr12:72087935-72088153-
KDM4A
TPH2GH12J072293-12:72295935:G:A1.6817Enhancer173EliteeRNA_co-expressionchr12:72293713-72298006ENSR12_933NQZ, ENSR12_BJCDK
MYCCEBPBBHLHE40FOSMAFKCEBPBJUNDFOSMYCNFE2L2RAD21CEBPBCTCF
TPH2GH12J072298-12:72298368:A:G0.2609Enhancer13-eRNA_co-expressionchr12:72298166-72298439--
TPH2GH12J072307-12:72307209:T:C0.0633Enhancer67-eRNA_co-expressionchr12:72307092-72307541-
ATF7
TPH2GH12J072334-12:72334956:T:C0.5684Enhancer13-eRNA_co-expressionchr12:72334930-72335281--