GWAS Annotated Elements: TPH2

Gene: tryptophan hydroxylase 2

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH12J071780 - 12:71780329:A:G 0.2846 Enhancer - C-HiC chr12:71780157-71781250
CTCFRESTRAD21MIER1SMC3ELF1TRIM22E4F1ELF4ZNF143FOXA1ZBTB33
GH12J071782 - None 0.0000 Enhancer - C-HiC chr12:71782083-71782594
IKZF1JUNBRUNX3BATFSPI1
GH12J071787 - None 0.0000 Enhancer - C-HiC chr12:71787720-71787870
SMARCE1ARID1BHMBOX1NR2F2SPI1NR2F6EGR1
GH12J071799 - None 0.0000 Enhancer - C-HiC chr12:71799000-71799201
FOSYY1STAT3NR2F2EP300
GH12J071864 - 12:71865407:T:G 0.9391 Enhancer Elite Distance chr12:71864679-71866705
CTCFEBF1JUNDSMC3RAD21HNF4A
GH12J071870 - 12:71870454:G:T 0.1322 Enhancer - Distance chr12:71870200-71871000
IKZF2IKZF1MTA2ATF2ATF7TBX21RUNX3ARID3AJUNBGABPASRF
GH12J071938 - 12:71938935:A:G 0.9023 Promoter/Enhancer Elite Distance chr12:71938795-71938970
RESTCTCFHDAC1GATA2ZNF263MIER1ATF4SIN3ACHD7ZBTB40ZSCAN29MTA2MNTGATA3NCOA1CHAMP1EHMT2SAP30NCOA6CBX3MITFMXI1XRCC5ETS1ZNF143RUNX3HDAC2NR2F2MYCRCOR1FOXK2ARID3ATEAD4TAF1TBL1XR1CC2D1AYY1CBX5CREMTFAP4ZNF184JUNDZNF24HCFC1BHLHE40USF2MAFKTCF12USF1ARID2MAXNANOGTAF7ELF1AFF1STAT3ZBTB7ASP1GABPAKLF16SMARCA4SMARCE1EP300ARNTKDM1ARAD21SMC3SPI1NR3C1ATF3EGR1DACH1RXRATRIM22SMARCA5
GH12J071946 - 12:71948164:T:TTTA 0.4041 Enhancer - Distance chr12:71946700-71950256
ASH2LCHD1GABPARBBP5YY1HNRNPLLRESTRXRAZBTB33SP1RAD21HNF4AEGR1MAXATF3HNF4GEP300FOXA1JUNDTAF1SKITBPARID3AFOXA2GATA3STAT3TFAP4ETV4TBL1XR1ZHX2CREB1ETS1FOXP1RCOR1ASH2LCEBPBHDAC2SOX13FOSL2NANOGSMC3MYCELF1RFX1TBX3SMARCA4FOSKDM1ASIN3ATCF12POLR2ATAF1CHD1FOXA1POLR2ATBPYY1CHD7MAFKFOXA1GATA3SP1NANOG
GH12J071957 - 12:71958763:T:C 0.1356 Enhancer - Distance chr12:71957368-71959594
HNF4AATF3GATA3JUNDESR1FOXA1NR3C1SP1ESR1RCOR1BHLHE40FOSGATA3
GH12J071972 - 12:71972867:G:A 0.6961 Enhancer - C-HiC,Distance chr12:71972800-71972950
NFIBCTCFNFICLCORLRAD21
GH12J072017 - None 0.0000 Enhancer - Distance chr12:72017160-72017310
CTCFZFXMAXSP1RAD21RESTSMC3RXRAHNF4GXRCC5ZNF444ZNF579TRIM22MXI1HNF4AEP300GATA3SMARCA5ZNF143RB1IRF4MYCPKNOX1SMARCA4FOXA1
GH12J072037 - None 0.0000 Enhancer - eRNA_co-expression,Distance chr12:72037030-72037197
SMARCA4
GH12J072053 - 12:72054151:A:G 0.4132 Enhancer - Distance chr12:72053145-72054764
EP300
GH12J072072 - 12:72072400:G:A 0.6585 Enhancer - Distance chr12:72072328-72073132
NFICNFIBSMARCA4STAT3FOS
GH12J072075 - None 0.0000 Promoter - Distance chr12:72075607-72075667
NR2F2
GH12J072087 - None 0.0000 Promoter - Distance chr12:72087216-72087276 -
GH12J072088 - None 0.0000 Enhancer - eRNA_co-expression,Distance chr12:72087935-72088153
KDM4A
GH12J072293 - 12:72295935:G:A 1.6817 Enhancer Elite eRNA_co-expression chr12:72293713-72298006
MYCCEBPBBHLHE40FOSMAFKCEBPBJUNDFOSMYCNFE2L2RAD21CEBPBCTCF
GH12J072298 - 12:72298368:A:G 0.2609 Enhancer - eRNA_co-expression chr12:72298166-72298439 -
GH12J072307 - 12:72307209:T:C 0.0633 Enhancer - eRNA_co-expression chr12:72307092-72307541
ATF7
GH12J072334 - 12:72334956:T:C 0.5684 Enhancer - eRNA_co-expression chr12:72334930-72335281 -