GWAS Annotated: TPX2

Gene: TPX2 microtubule nucleation factor

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
TPX2GH20J031652-20:31653089:C:T0.2794Enhancer161EliteC-HiCchr20:31652549-31653367ENSR20_B89LF
HNRNPKMXI1FOSSTAT3YY1RCOR1USF2RFX5USF1MYCFOS
TPX2GH20J031683-20:31688606:A:T0.8015Enhancer286EliteC-HiCchr20:31683948-31688690-
ZNF316ZNF384RBM22POLR2GAGO2RBFOX2POLR2AEBF1MEF2BDPF2IKZF1ZNF687NFICMLLT1TCF12PAX5RUNX3EEDNR3C1MNTNBNATF7PKNOX1BHLHE40TRIM22L3MBTL2IKZF2E2F8DACH1SMARCA4ZNF687HDAC1MLLT1SRFELF1MAXAGO2SPI1MAFKMYCRBM22ZBTB40PAX5EP300MXI1TBL1XR1RESTRUNX3ZNF592SOX6WRNIP1CTCFTAF1GATA3FOXA1RBM22AGO2ZBTB33ZSCAN29EP300RBM22
TPX2GH20J031702-20:31704936:T:C1.4987Enhancer479EliteC-HiCchr20:31702817-31709594ENSR20_C55XQ
RBFOX2AGO2ATF7ATF4TCF7POLR2GRBM22PKNOX1RBFOX2KDM1ASIN3APOLR2ACEBPBCTCFFIP1L1ASH2LGATA3U2AF1TAF1ZNF444ZNF592FOSZNF687ESRRAMNTNCOA3JUNDRCOR1CREB1YY1TBPGABPACTBP1TCF12ZBTB7BSP1RESTATF7ETS1IKZF1SMC3MAXDPF2MAFKESR1ZBTB33ETV4NEUROD1MYCFOXA2FOXK2ATF3ELF1NR3C1CREMCCAR2STAT3FOXA1TFAP4EP300HDAC2ATF2RAD21NCOR1SKIHNRNPUL1TCF7HNF4GHNF1AEGR1NR2F6SIN3BMAFFLCORLFOXP1ZNF217GATA4BHLHE40NFE2L2HDAC1HNF4AXRCC5FOSL2TBX3SOX13CHD4ZNF24ZBTB7ARXRABCL3SMARCE1CEBPBSMARCC2ARID3ATBL1XR1CUX1KAT2BHDAC6ZMYM3RBM25TFAP4BCORPOLR2GRBM22FOSL2RCOR1POLR2ANFICEP300AGO2TCF12IKZF1RELBTBL1XR1EBF1MEF2BPKNOX1CTCFMTA3IKZF2ZFXATF2RUNX3WHSC1JUNBFOSIRF4EEDSPI1ZNF24BATFNFRKBASH1LGABPB1NCOA6ZNF592ZNF274NFATC3DPF2KDM5ASKILHMBOX1TRIM28MNTASH2LNBNHDAC2MLLT1E4F1HDAC1CHD4ZBTB2IRF1SMARCA4FOXM1ARNTL3MBTL2MGARFX1CUX1NCOA2CC2D1APKNOX1NR2F6GMEB1ARID1BCTBP1GATA1KDM1ANCOA1CBFA2T3ZFP91TAF9BHDAC3FOXK2TBPLEF1RESTNCOR1ZNF639SIN3ASMARCC2MYCPMLMEIS2ARID3ASOX6PHB2EGR1ATF3BCL3SMARCE1TBL1XR1GATAD2BKLF16HES1FOXA2C11orf30NUFIP1ZNF316RNF2TRIM24RXRAZMYM3TAL1SKIMBD2MTA2UBTFSP1MAFFTCF12NR2F2ZEB2RBM22EP300CREMCBFA2T2TBX3NEUROD1EP400MAXRCOR1TFAP4NFICIKZF1XRCC5RUNX1YY1E2F6HNRNPLFOXA1EHMT2ATF7SMC3GATA2FIP1L1TCF7GATA3RAD21ETV4NFE2HNF1ABHLHE40CCAR2CEBPBTEAD4ETS1JUNDATF4HNF4GCBX5ELF1GATA4NR3C1ZKSCAN1ZBTB33ZNF143FOSL2STAT5AHNF4APRPF4MYNNSOX13CTCFZBTB7ANR3C1ASH2LPOLR2ACTCFPMLRBFOX2EBF1EP300ATF2ARID1BATF7CTBP1HNF4ATRIM24SIN3ANCOR1MNTSP1ZNF217RBM39KDM1ATBL1XR1NFICTAF9BIKZF1ZNF318TCF12HNRNPLTAL1CBFA2T3HDAC2HDAC1RAD21TFAP4SMARCA4MAXDACH1SPI1SAP30KLF16ZEB2CBFA2T2MYNNGATA3BHLHE40PRDM10RBM22ZEB1YY1MEIS2ZFXZNF687JUNDESR1FOXA1ZNF316PRDM10C11orf30MAFKMAFFCTCFRBFOX2POLR2G
TPX2GH20J031725-20:31726243:A:G1.0094Enhancer130-Distancechr20:31725574-31726350ENSR20_8X6ZT, ENSR20_59GGXW
CTCFXRCC5RESTRAD21SMC3HNRNPK
TPX2GH20J031726-20:31727014:AAGAATCCC:A0.9464Enhancer308EliteDistancechr20:31726933-31728407ENSR20_B8B28
RFX1YY1NR2F6HDAC2FOSTBPCEBPBUSF1
TPX2GH20J031730-20:31730642:C:T0.8226Enhancer160-Distancechr20:31730347-31732080ENSR20_9GL3F
KDM1AZFP91ZBTB33ZNF384MITFLCORLFOSELF1RFX5ZNF384NR2F6RXRASP1FOXA2FOXA1FOSL2ARID3AEP300MNT
TPX2GH20J031733-20:31734233:C:T0.5000Enhancer36-Distancechr20:31733604-31734370-
ZNF24
TPX2GH20J031738-20:31738535:T:G1.0414Promoter/Enhancer641EliteDistancechr20:31738138-31741414ENSR20_B8B3S, ENSR20_8X79L, ENSR20_B8B3Z, ENSR20_B8B44, TPX2_1
NR3C1ATF4ZNF24ZNF639BCORHDAC1ZNF184ARID2MCM7MLLT1PRPF4ZNF316HDAC2CHD1RBFOX2TAF1POLR2GZSCAN29GATA4ETV4CLOCKKDM5APRDM10IKZF1ZHX2RXRAASH2LATF7YY1NRF1BRD4MTA3RESTSREBF1MXI1NR2F6NUFIP1RELBIKZF2POLR2AFOXK2JUNJUNDBHLHE40NFRKBPHF8ZNF24SMARCC2KDM5BEP300TAF9BTCF12ZBTB33STAT1PMLGMEB1GABPB1MAXCCAR2IRF1CTCFRAD21SMAD5EP400NFICSMC3ZNF143ZBTB2HNF4AETS1ZBTB40FOXA1WRNIP1ATF3TBPSIX5AFF1DEAF1E4F1MEIS2KDM4BCREB1TCF7L2KDM4AHCFC1KDM1AMNTZNF639SP1GABPANR2C1CREMZEB2MBD2IRF2ELF4ELF1FOSL2MYCTBL1XR1FOSSUZ12FOXM1ELK1STAT3RBBP5SIN3ACREB3L1POU2F2SPI1MYBL2USF1E2F1ESR1NEUROD1NFATC3CEBPBRFX5RBM39ASH1LCC2D1AZNF217NCOR1CBFBU2AF1NBNIRF3NFYBTAF15NFRKBKDM5ARBM25RUNX3ZFXSAP30E2F4NCOA1GATAD2BSOX6C11orf30HDAC1SIN3BTRIM28SMC3MYNNTAF7HNRNPLL3MBTL2ZHX1ZNF263RAD21ZNF24ZNF207CHAMP1SMARCC2SKILPTBP1HNRNPLLMAFKSMARCA4ZBTB7ANFE2L2PAX5BRD9UBTFARNTRLFGATAD2APHF21AMLLT1RB1TBX3CTBP1AGO2E2F6CLOCKXRCC5AGO1RFX1ZSCAN29SMARCA5CHD1ZZZ3NFRKBTCF12ETS1HDAC3E4F1TAF9BELF1EP400MNTSIN3AKDM1AATF3CREB1JUNBFOSMTA3ATF7ATF4SMARCC2ATF2TBPE2F1CEBPBPKNOX1SOX6JUNMAFKSMARCA4SMARCE1JUNDRBM22BATFCREMNBNSOX13NFE2L2IKZF1MLLT1CC2D1AFOXK2ZNF184BCORSMARCA5
TPX2GH20J031741-20:31741867:G:A1.0335Enhancer133EliteDistancechr20:31741800-31742000-
SMARCA5HDAC2ZEB2
TPX2GH20J031747-20:31747886:C:G1.9319Enhancer192EliteDistancechr20:31747014-31748569ENSR20_9GL8B
RBFOX2TRIM28MLLT1ZNF384MXI1SP1RXRAMAXMEIS2YY1HNF4AGATA2FOXA1GATA3SPI1
TPX2GH20J031750-20:31751582:C:G0.1306Enhancer63EliteDistancechr20:31750761-31751811ENSR20_9GL9B
POLR2ACEBPBFOS
TPX2GH20J031755-20:31756108:G:A1.0527Enhancer1-Distancechr20:31755614-31756700-
HNF4A
TPX2GH20J031758-20:31759995:C:T1.8133Enhancer183EliteC-HiC,Distancechr20:31758791-31761263ENSR20_9GLD5
RAD21HNF1APAX5PKNOX1FOSCEBPB
TPX2GH20J031764-20:31764135:TATACATGTATGTGTACATACATGTACAC:T0.1379Enhancer133EliteDistancechr20:31764120-31765897ENSR20_8X7SF
ZNF184JUND
TPX2GH20J031767-20:31767370:CTTTTTCTTT:C0.1216Enhancer1-C-HiC,Distancechr20:31767076-31767726--
TPX2GH20J031768-20:31769208:TA:T1.0240Enhancer1-C-HiC,Distancechr20:31768380-31769276-
NFXL1ZBTB33
TPX2GH20J031769-20:31771091:G:C0.6552Enhancer1-C-HiC,Distancechr20:31769682-31771792-
ZBTB33
TPX2GH20J031788-20:31788590:C:G0.6209Enhancer82-Distancechr20:31788510-31789093ENSR20_9GLN5
CTCFPOLR2ARBM22RAD21MYCRBM22
TPX2GH20J031808-20:31809076:T:TA1.0451Enhancer1-C-HiCchr20:31808369-31809249--
TPX2GH20J031809-20:31810707:A:G0.7864Enhancer295EliteC-HiCchr20:31809746-31813345ENSR20_9GLWF, ENSR20_9GLWZ, ENSR20_8X8T5
POLR2ASIN3AFOSCREB1JUNBCL3CEBPBRCOR1SPI1POLR2APOLR2AMYCHDAC1ARID1BDPF2CTBP1NR2F6TCF12HDAC2ESRRACBFA2T2BHLHE40IKZF1HES1NCOR1SOX6SMARCA4TEAD4GATA1AFF1NR2F1CBFA2T3ATF7RCOR1ZSCAN29ATF2NR2F2CC2D1ACREB1JUNE2F1ATF3JUNDFOSCREMMEF2A