GWAS Annotated: TSKU

Gene: tsukushi, small leucine rich proteoglycan

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
TSKUGH11J076379-11:76380596:C:T0.7129Promoter/Enhancer575EliteTF_co-expressionchr11:76379341-76382989ENSR11_BK69D, ENSR11_935BJX, ENSR11_BK69K, RP11-111M22_2, THAP12_1, RP11-111M22_1
CHD1ZNF316DPF2ZKSCAN1POLR2AZNF24BRD9ARNTPKNOX1SAP30IKZF1ZNF217MEIS2NBNASH2LSMARCA5KDM1AZBTB40HDAC2XRCC5SMARCA4BRD4CBX3NFXL1PRDM10ZNF574HDAC1BCORMXI1SIN3AZNF444MNTEBF1CLOCKMYCZNF143TAF1MGAZMYM3RBFOX2CBX1MAXRUNX3BHLHE40POLR2GAGO2SAFBZNF592PHF8RBM25E2F6L3MBTL2RB1EGR1SMAD5ZFXZNF687ARID3ANFICDPF2GATAD2BSIN3BLEF1CTCFARNTAGO1GMEB1CHD1RXRAIKZF2TRIM22TAF15NRF1HNRNPLLNBNCBFBHNRNPLCREMJUNBHNRNPKSMARCE1TAF1ZNF444HCFC1MAXETS1ZBTB40TCF12PKNOX1E4F1ZNF143ESRRATBPZBTB7AU2AF1EP300PHF20RNF2ELF1EGR1PCBP1MBD2PRDM10MNTMYNNBHLHE40E2F8YY1RCOR1ZNF574ETV4CREB1RAD21ELK1SP1JUNDFIP1L1XRCC5CBX3NR3C1IRF1SOX6ESR1POU2F2CTBP1TBL1XR1MYCSUZ12SKIZHX2RB1RUNX3ZNF639FUSNFE2SRFKDM5ATEAD4MAFKKDM4BGABPASPI1RBM39HSF1HNF4ASIX5E2F4E2F6HES1GABPB1TRIM28MAFFMEIS2FOSUSF1MEF2BKDM5BATF7MXI1C11orf30KAT2BBCL3RESTZNF207ZNF217RFX1ZBTB2FOSL1GATA4RBBP5MGAGATA3KDM1AL3MBTL2NR2F2ATF3GATAD2BFOXK2ASH2LSMC3DPF2E2F1SMARCA4FOSL2HDAC2CEBPBSAP30HDAC1ZSCAN29NFE2L2KDM4ARUNX1ZHX1EBF1NFATC3UBTFNR3C1ZNF8ATF7SIN3APRDM10ZNF263
TSKUGH11J076698-11:76704703:AGAT:A1.6791Enhancer375EliteC-HiCchr11:76698316-76705176ENSR11_BK7ZF, ENSR11_D5RQ6, ENSR11_BK7ZW, ENSR11_848W32, ENSR11_935G2K
RLFCTCFRB1ZNF592RESTMYNNKLF16ARID2ZBTB33ATF4MYCCREMSMARCA4RNF2FOXA2ZBTB7AZNF143ZNF24TEAD4ARNTRAD21EGR1HDAC1CC2D1AGATAD2ABACH1BRD9HDAC2SKILMTA1FOXK2MTA2SMARCA5USF1POLR2AKDM1ANR2F6BCORNR2F2NCOR1CBFA2T3ZMYM3TAL1JUNCBFA2T2FOSL1MTA3TCF12ATF3RBM25MAXRBFOX2ZFXZNF592L3MBTL2HMBOX1DPF2HCFC1PHF8NFRKBZBTB7AC11orf30GMEB1MAFKZNF316GATAD2AGATAD2BEGR1EP400ARID1BCHAMP1SMARCA4SMARCE1IKZF1TBPE4F1TCF12TRIM28ELF4ELF1NFICNFE2ZNF143NCOR1HDAC2GATA1CBFA2T2RLFTAL1UBTFATF3E2F7HDAC1EP300POLR2ATAF9BMYCZSCAN29ATF7MNTHDAC3LEF1E2F8ESRRAZEB2CBX3RNF2MBD2FOXK2ARID3ADACH1NR2F2ZNF282NR2F6RCOR1TBL1XR1MCM7MXI1NRF1MLLT1RESTZNF318TEAD4ARNTBHLHE40SMAD1NCOA6GATA2NR3C1MTA2CEBPBATF2ZBTB5EHMT2JUNBTRIM24KDM1ASMC3PMLNCOA1FOXA1ZNF639NEUROD1SKILJUNMYNNPRDM10NR2F1SMARCC2FOXM1CUX1ZNF184FOSETS1JUNDHES1MITFCDC5LIRF1MAFFCTBP1NCOA4STAT2NFATC3MEIS2CC2D1AZKSCAN1KLF16BCORPHB2USF2STAT5AZNF24SOX6RUNX1GABPAFOSL1MTA1HCFC1FOSL2TCF7STAT1PKNOX1NFE2NBNZBTB2AFF1CREMSP1BRD4SMARCB1SAP30WHSC1MTA3RBFOX2CBX1ZBTB2NFXL1E2F1ZMYM3SMARCA5BRD9RBM25GATA3JUNDNR3C1FOSPHF21ARESTNFRKBRBFOX2SETDB1ZNF274RUNX1ZNF24ASH1LGABPB1PHF20CBX1IKZF1ZNF639PTBP1BRD9DPF2ELF1RBM25SMARCA5CBFA2T3STAT3HDAC2BCORPOLR2AHMBOX1ESRRAKDM1AARID1BMYCRLFDACH1ZNF143SMARCE1PHF21AMNTSTAT1NCOR1AFF1ZSCAN29CC2D1AARNTZBTB11MBD2ZMYM3NCOA1CHAMP1TAL1UBTFNRF1RNF2CTBP1NFATC3EP400ATF7E4F1SKILGMEB1GATA1CBX3LEF1IRF1NBNSMARCA4ATF3NEUROD1NR2F6CBFA2T2EGR1TCF12ZBED1SOX6MYNNGATAD2AZBTB2JUNBZNF282HDAC1JUNMTA2ZNF318MAXGATAD2BPKNOX1CREMRUNX1RESTTBL1XR1C11orf30GABPANFICTEAD4MAFFMAFKHDAC3EHMT2ZEB2BHLHE40ZNF316TRIM24FOXM1RCOR1CUX1ZNF592HES1FOSL1JUNDNFE2CREB3L1MEIS2EP300PMLNR2F2SMARCC2NR2F1MTA3STAT5AKLF16GATA2TCF7MTA1TRIM28FOXK2ZBTB5TRIM28ZMYM3ASH2LIKZF1POLR2ATAF1SIN3AMAFKTCF12TBPMAFFYY1ZNF316NFE2L2CBFA2T2C11orf30KDM1ANFE2TAL1SP1EP300BACH1CBFA2T3GATAD2BDACH1CEBPB
TSKUGH11J076766-11:76766200:A:G2.8186Enhancer183EliteeQTLschr11:76766076-76766226-
BCL3NR2F2RXRACREMHNF4ATFAP4SP1ESR1RESTEP300ESRRA
TSKUGH11J076768-11:76767810:C:T4.2572Enhancer368EliteDistancechr11:76767390-76773562ENSR11_BK8CH, ENSR11_935GP7, ENSR11_BK8CQ, ENSR11_848XGW, ENSR11_C9LNK
TCF12SP1HNF4AATF3PRDM10ZEB1RESTMAXRAD21POLR2AMYCJUNDRESTTBPFOXA2RXRASP1TAF1SPI1RAD21YY1CUX1HNF4AFOXA1SOX13SIN3AETV4SKIJUNDPOLR2GSREBF1RBFOX2USF1ASH2LNCOR1RXRAPOLR2ASP1ETS1RESTZBTB33U2AF1MAXYY1EGR1HNF4ACREMJUNDARID3ATAF1RAD21MNTATF3FOXA1HNF4GTBPFOXA2BHLHE40NR2F2SIN3ATCF12CHD4NR3C1HNRNPLZNF687TBX3SKIHDAC2FOSL2EP300MAFKTFAP4ZHX2NCOA3MAFFUSF2CEBPBNR2F6NFE2L2C11orf30ZMYM3FOSZBTB7AESRRAZHX1BACH1USF1NFE2ESR1MBD2ZKSCAN1DPF2KDM1AATF7ARID1BPHF21ATBPATF4RAD21HDAC1ATF3MAFKCEBPBZMYM3CTCFTAF1RBM25BCORTCF7L2TCF12SP1GABPASIX5SIN3AZBTB33CREB1RCOR1FOSL2BHLHE40RESTBCL3NR3C1BRD4JUNDEP300MAFKNFE2L2YY1ESRRAATF3RXRAMAFFFOXA1RAD21CTCFFOSNR2F2ZNF217HNF4AMBD2EGR1ZNF687MAXNR2F6HNF4GFOXA2CTBP1TFAP4ZNF507RAD51ESR1KDM1ANR3C1USF2RFX5DPF2MYCATMCEBPBLCORLUSF1SREBF2SREBF1MYCKDM1AESR1CHD4IKZF1YY1HDAC1TRIM28RXRANCOR1SIX5SP1MAXFOXA2FOXA1POLR2AATF3BCL3HNF4AGABPARESTZBTB33EP300TCF12EGR1SIN3AHNF4GRAD21ATF7CEBPBNR3C1NFIBNR2F6NR2F2CREB1DPF2ZNF217CUX1FOSL2NFXL1RAD51NEUROD1GATAD2BJUNDZKSCAN1NCOA3ESRRAESR1CTCFMAFKZNF316GATA3MTA1CTBP1MBD2FOSPOLR2A
TSKUGH11J076773-11:76774314:A:G2.5661Enhancer275EliteDistancechr11:76773583-76774432ENSR11_935GQP
POLR2AESR1GABPB1YY1RXRAGATA3SP1ZBTB33JUNDFOXA1NR2F2MAXHNF4ASTAT3GABPAEP300FOXA2RAD21ATF3POLR2AHNF4GEGR1NR3C1RESTTAF1BCOR
TSKUGH11J076780-11:76784835:T:C2.9011Promoter/Enhancer647EliteeQTLs,Distancechr11:76780723-76785733ENSR11_935GT2, ENSR11_BK8FL, ENSR11_935GTD, ENSR11_5N3LZJ, TSKU_1
CREMCTCFASH2LIKZF1NCOR1TFAP4EP300SP1YY1RXRAETV4GABPATBPNR2F6GATA4HNF4GKDM1APOLR2AZBTB33RESTZMYM3SKIZBTB7APOLR2GHNF4AFOSL2CEBPBCCAR2POLR2AMYCMAFKFOSHDAC1ZFP91SAP30KDM5AL3MBTL2MNTNFRKBSREBF2BRD9POLR2AYY1ZBTB40MIER1SIN3ASMARCA4ASH2LZNF24ARNTAFF1CTCFCC2D1AKDM5BPOLR2GZNF639CREMMXI1TBPGMEB1TAF1MTA2DPF2GABPB1FOXK2SIX5TAF9BMLLT1NCOA1LEF1ELF4ZSCAN29ZNF384RESTMTA1ZNF184ZEB2NR2F2NRF1ZNF512BNCOR1ARID1BE2F1HDAC2NBNZBTB2CHAMP1ASH1LSUZ12ETS1CTBP1SPI1KDM1AGABPAMTA3EHMT2ZBTB33ATF7EGR1TAL1ZNF444EP300RBFOX2NFICBCORPMLTCF12SKILPHF8MAXFOSRBBP5RBM39TRIM24GATAD2ARCOR1ELF1E2F8CEBPBTAF7NFIBIKZF1CBFA2T2SP1TFAP4SMARCE1HNF4AFIP1L1HNRNPLLBMI1MAFKPHF20SKICBX1RXRARAD21NR3C1STAT3MYCTCF7NANOGJUNDE4F1NCOA2SOX6CBFA2T3ZMYM3EP400HCFC1IRF1PRDM10CBX5TBL1XR1GATAD2BZNF143JUNBSMC3NFE2L2IRF3FUSKDM4AKLF16ZHX1ZFXGATA1ETV4NEUROD1ZBTB7ASIN3BUBTFRB1FOXM1RBM22HNRNPKZNF592L3MBTL2SRSF4HNRNPLU2AF1AGO1AGO2CLOCKE2F6GABPAMGANFRKBRLFLEF1SREBF2SMARCA4BCORZNF687SREBF1MLLT1BHLHE40MYCNR3C1ETV4RUNX1GMEB1EP300E2F6TAF1RFX1SMAD1RBBP5KDM1AZNF444KDM4AKDM5BJUNDPCBP1TCF12SP1RBM39HNRNPLLFUSRESTTBPGATA4CLOCKTFAP4AGO2ZBTB7BNRF1CTCFCHD1SKILPHF8TAF15MLLT1HNRNPLCTBP1SAP30MGASMARCC2YY1JUNDEGR1RLFMXI1TCF7L2L3MBTL2LEF1UBTFRESTZNF592FOSBHLHE40MAXE2F6MYCRAD21CEBPBCREME4F1ARID1BTBPJUNDNCOR1FOXK2TAL1SP1NR2F6BATFGABPABCL3RESTFOSL2ELF1CTCFPOLR2A
TSKUGH11J076786-11:76790513:A:G1.8371Enhancer353EliteTF_co-expression,Distancechr11:76786613-76790685ENSR11_C9LPP
YY1SP1MXI1RXRAZNF316MAFKCTCFBCORZMYM3RBM25ZBTB33SMARCA5BCL3RBM39MXI1POLR2ATCF12MNTMAXSP1NR2F6MYCNR3C1HDAC2CEBPBMBD2SIN3ATFAP4FOSHNRNPLDACH1NR2F1TRIM28NCOA1ZNF184TBPCBFA2T3E4F1L3MBTL2ATF3SMARCE1PMLSMARCA4MTA3SKILZMYM3NFICDPF2SMARCC2SOX6CBX3NR2F2HMBOX1KLF16NEUROD1MYCZKSCAN1KDM1AMITFMYNNGATA2ETS1RUNX1CC2D1AHDAC2NCOR1GATA1ZNF263MTA2ARID1BCBFA2T2MEIS2HDAC1ZNF316CREMEP300GATAD2AEGR1GABPATAL1PKNOX1CREB1RLFCTBP1E2F6RCOR1TEAD4JUNDBCORTBL1XR1JUNCEBPBCBX5MAXNR3C1TRIM24EHMT2HCFC1RAD51ATF7ZEB2IKZF1MXI1ZNF143USF2ZBTB7BCTCFCUX1NFIBEP300BMI1ZNF579MTA1HNRNPLCLOCKESR1MBD2NEUROD1FOSFOXA1ELK1RCOR1GATAD2BJUNDZHX2MYCZNF217HES1SMARCE1NCOA3DPF2YY1CTBP1ZNF687ESRRAMNTSREBF1RAD51SIN3AZNF592GATA3ZNF24NR3C1KDM1AZNF444USF1RBM22ZBTB40HDAC2TCF12CBFA2T2ZNF316ZBTB33
TSKUGH11J076791-11:76791510:GGTGT:G0.6343Enhancer105-Distancechr11:76791310-76792340ENSR11_848XWT
HNF4ANR3C1CTCFSP1PRDM10MAFKATF3FOSNR3C1ATF4EP300JUNDSTAT3NFE2L2RXRACEBPBFOXA2TFAP4
TSKUGH11J076793-11:76793654:G:A1.9664Enhancer228EliteDistancechr11:76793015-76794449ENSR11_BK8H7
ZNF280AXRCC5POLR2AHNF4ACREMKDM1ARXRANR2F6SP1TCF7HDAC2HNF4GEP300RBM22FOXA2FOXA1NR3C1POLR2AKDM1ABCORRBM25
TSKUGH11J076794-11:76795528:T:A2.5783Enhancer56-Distancechr11:76794650-76797679-
KDM1ABCORRBM25JUNDPOLR2APOLR2GMYCTCF12POLR2APOLR2AHNF4APOLR2ARESTMAX
TSKUGH11J076806-11:76807556:G:C1.4028Enhancer325EliteC-HiCchr11:76806977-76808126ENSR11_BK8K7, ENSR11_5N3R2N
HNRNPKIKZF1ZNF207ZNF512BHDAC2ZNF24ZNF639EHMT2SMARCE1NCOA3NR3C1ZBTB5SMARCA5CC2D1AZNF316MTA1ASH1LGATAD2BNFRKBL3MBTL2PHB2HDAC1MLLT1ARHGAP35PCBP2MTA2ASH2LMNTCTCFMXI1RXRAMAXCREB3L1SIN3AMGAEP300MYCEP400RBM39BRD9RCOR1CTBP1POLR2APRDM10DACH1RAD21ZNF592POLR2GSP1CBX3YY1E2F6ZFXXRCC5ZNF143CC2D1AZNF444RNF2NRF1SMARCA4TBPRUNX3IKZF1TRIM22ZNF579MEIS2UBTFNBNNR3C1GABPARESTSMC3DPF2GATAD2ABCORRB1CREMZNF384JUNDZBTB7ASMARCA5FOXA1FOXK2ARID1BE2F1GMEB1ZNF316RBFOX2
TSKUGH11J076810-11:76810484:T:A0.7826Enhancer183EliteC-HiCchr11:76810200-76810800ENSR11_BK8KL, ENSR11_5N3RHQ
CTCFSP1HNF4ANBNZNF143ZNF592MYCTRIM22ARID3ARAD21SMC3JUNDRESTJUNBFOSIRF1BATF
TSKUGH11J076911-11:76911366:G:A0.4900Enhancer171-C-HiCchr11:76911216-76911366ENSR11_935J8F
TRIM24IKZF1DPF2ARID1BDACH1EP300MEIS2RFX1E4F1SP1ARNTEGR1IRF1PKNOX1STAT3STAT5ASIX5STAT1BMI1SRFKDM1ANR2F6NR2F1