GWAS Annotated: TTC39C

Gene: tetratricopeptide repeat domain 39C

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
TTC39CGH18J023634-18:23635290:TA:T0.0986Enhancer181-C-HiCchr18:23634856-23636444ENSR18_B6NMH
STAT3EBF1FOSPOLR2AJUNDRUNX3MAFKMAFFIKZF1C11orf30ZNF316NFE2BMI1MYCUSF1CEBPBHDAC2EP300HNF4GHNF4ANR2F6FOSJUND
TTC39CGH18J023636-None0.0000Enhancer99-C-HiCchr18:23636556-23636706-
NR2F6FOSJUNDATF3
TTC39CGH18J023881-18:23881681:G:A0.1784Enhancer63EliteC-HiCchr18:23881576-23881726-
POLR2AEP300
TTC39CGH18J023882-18:23884153:A:G0.9585Promoter/Enhancer453EliteC-HiCchr18:23882509-23886322ENSR18_B6PZD, ENSR18_9CGZF, LAMA3_4
EHMT2FOSJUNDPOLR2ACEBPBSP1MAXEP300ATF3RXRASKITBPBHLHE40HNF4AARID3APOLR2GFOXA2RAD21USF1TCF7RBFOX2KDM1AFOXA1EP300STAT3FOSPOLR2AEP300HNRNPKTBX21ZNF384
TTC39CGH18J023924-18:23925261:T:C0.4693Enhancer82-C-HiCchr18:23924696-23925586ENSR18_8NZRH
FOSJUNDCEBPB
TTC39CGH18J023943-18:23944586:A:T1.1521Enhancer36-eQTLs,C-HiCchr18:23943949-23944849ENSR18_9CHLC
SP1EP300FOSMAFKNFE2L2CEBPB
TTC39CGH18J023949-18:23951938:G:A1.4605Enhancer82-C-HiCchr18:23949038-23952299-
ETS1POLR2ANANOGNANOGZFX
TTC39CGH18J023967-18:23968210:C:A0.6997Enhancer192EliteC-HiCchr18:23967043-23968694ENSR18_B6QFJ
MTA2PKNOX1CBFBNBNIKZF2IKZF1RELBTBX21DPF2MTA3MLLT1ZNF687EEDGATAD2BBHLHE40EBF1RUNX3MNT
TTC39CGH18J023969-18:23969940:T:C0.5974Enhancer71-C-HiCchr18:23969750-23971354ENSR18_B6QFX
IKZF1NRF1NFICPOLR2ATBX21ZNF687SPI1RUNX3MAFK
TTC39CGH18J023972-18:23972350:C:G0.0322Enhancer219EliteeRNA_co-expressionchr18:23972299-23972974-
IKZF1IKZF2STAT5ANFICATF7ZBED1EP300RUNX3CREMIRF4SRFPKNOX1MYCFOSEBF1CREB1KDM1AJUNBHDAC2GATA3EEDBATF
TTC39CGH18J023981-18:23982300:C:T1.4117Enhancer230EliteeQTLschr18:23981197-23983605ENSR18_B6QHK, ENSR18_8P32P, ENSR18_B6QHP
NFICIKZF1MEF2BIKZF2ATF2JUNBZBED1NFATC1CREMCBX5FOXA1ETV6MEF2AMEF2CRUNX3TAF1BATFRAD21PAX5TCF12EEDSMARCA4POLR2AKDM1ATRIM28TAF1NRF1SP1TCF12RESTHNF4ARAD21EP300SMC3FOSFOSL2RUNX3BHLHE40FOXA1FOXA2REST
TTC39CGH18J023986-18:23986997:G:A1.3701Enhancer105-Distancechr18:23986144-23988003-
POU2F2BCL11AARID3AFOSBCL3MEF2AGABPACREMTCF7JUNBNFICBATFATF2BCL3NFICRUNX3EEDBATF
TTC39CGH18J023992-None0.0000Enhancer118EliteDistancechr18:23991136-23991286-
MAFKZNF316YY1MAFFFOS
TTC39CGH18J023991-18:23993422:A:C0.9929Promoter/Enhancer487EliteDistancechr18:23991602-23995327ENSR18_9CJ59, ENSR18_8P38Q, ENSR18_B6QKG, TTC39C_4
ZBED1CTCFMTA3YY1MXI1SMAD5DPF2POLR2ARAD21IKZF2IKZF1RXRASP1ESR1HNF4ARCOR1GATA3ZBTB33NFATC1NFICMTA2JUNBNR3C1CBFBPKNOX1TBX21FOSTAF1ARID3ACREMFOXA1MYCEEDEP300STAT3PBX3RUNX3ATF2TRIM28MXI1POLR2ASTAT3FOXA1ZBED1ARID3ANR3C1MYCGATA3RESTUSF1EP300SMAD5CBFBPOU2F2CEBPBFOSNFE2L2JUNBRCOR1TAF1MNTMEF2AJUNDPAX5ATF2CBFBETV6RUNX3MEF2ABCL3NFICEEDPAX5CREM
TTC39CGH18J023998-18:24003691:CT:C1.7427Enhancer375EliteeQTLs,eRNA_co-expression,Distancechr18:23998285-24004422ENSR18_B6QL4
CTCFSIN3AZNF217POLR2AFOXA2TFAP4ESR1FOXA1ATF7FOSMYCDPF2STAT3ZNF579MNTRFX1MTA3ELF1SREBF1YY1YY1EEDZBTB33NFICFOXA2SP1RUNX3FOXA1JUNDJUNBCEBPBRXRAHNF4ANR2F2BATFHNF4AHNF4GMAFKRXRARAD21FOXA2RUNX3RXRASP1CTCFRAD21SPI1DPF2ZKSCAN1IKZF1FOXA2IKZF2EEDJUNBNFICSPI1RUNX3MEF2CMEF2AEED
TTC39CGH18J024006-18:24007358:T:C1.1537Enhancer36-Distancechr18:24006591-24007518--
TTC39CGH18J024007-18:24008371:G:C1.1278Enhancer36-Distancechr18:24007691-24008543-
IKZF2JUNB
TTC39CGH18J024009-18:24011058:C:T1.2091Enhancer322EliteDistancechr18:24009158-24013154ENSR18_B6QMN, ENSR18_B6QMW, ENSR18_B6QN3
C11orf30NFE2L2MAXIKZF1SIN3APOLR2AMXI1MTA3CTCFEBF1NBNEEDSTAT5ATBPMEF2BSTAT3ZNF217BMI1NFATC3IKZF2ZBED1NFATC1GATAD2BRELBARNTATF2BHLHE40EP300RUNX3SMC3NFICARID3ATBL1XR1BCL11ACBFBETV6RCOR1RESTMEF2ASKILTCF12YY1POU2F2MLLT1RAD21MTA2PAX5DPF2MEF2CCREMKLF5ZNF207TAF1PKNOX1MEIS2SMAD5SRFIRF4TBX21ATF7PBX3NFYBCREMSPI1ZBED1EEDRAD51MAXNFYBUSF2NR2F2USF1SP1YY1HNF4ARXRARAD21GATAD2BRELBMTA2ATF2ARID3ANFATC3NFICELF1DPF2ETV6SPI1RUNX3EP300IKZF1IKZF2TBX21ETS1EEDYY1RAD21SP1FOXA1RXRAMAXFOXA2HNF4ABCL3
TTC39CGH18J024013-18:24014009:C:A1.2447Promoter/Enhancer607EliteDistancechr18:24013595-24016680ENSR18_B6QNB, ENSR18_B6QNH, TTC39C_1, TTC39C_2, TTC39C_3
CBX2ATF2PKNOX1CTBP1POLR2ARBM39SREBF2EGR1EZH2L3MBTL2HNRNPLLBHLHE40IKZF1ASH2LKDM1AYY1RAD21NBNRBBP5RBFOX2TAF15HNRNPLSMAD5TAF1CTCFKDM4AMEF2BBCL11AEEDETV6UBTFBACH1GABPARESTRELBSPI1JUNDSIN3ATBL1XR1EP300GABPB1IKZF2CBFBPHF8HDAC2PCBP1DPF2POLR2GE4F1GATAD2BELF1NRF1BHLHE40ZBTB7APAX5MXI1FUSHNRNPKE2F6MAXZSCAN29ZFXKDM4AZNF263MYCBATFCTCFZNF217BACH1RUNX3ZNF687AGO2CHD1ESRRASIN3ARNF2YY1ZNF592SMARCA5ARNTHDAC2FOXM1E2F6NR3C1PKNOX1RESTIKZF2CLOCKGATA3SP1BHLHE40SMC3L3MBTL2RAD21YY1MAXZNF687TAF1BACH1MNTIKZF1MYCTBPEP300CEBPBCHD1FOXA2TBL1XR1POLR2ACTCFEBF1YY1SIX5CTCFIKZF2TAF1ZNF143IKZF1RELBFOXA2ESR1SMC3FOXA1GATA3ZBED1TRIM22MYNN
TTC39CGH18J024016-None0.0000Enhancer183EliteDistancechr18:24016756-24016906-
CTCFIKZF2TAF1ZNF143IKZF1RELBFOXA2ESR1SMC3FOXA1GATA3ZBED1TRIM22MYNNSPI1RFX1RAD21BMI1
TTC39CGH18J024017-18:24017607:G:A0.1420Enhancer63EliteDistancechr18:24017600-24017800-
POLR2A
TTC39CGH18J024018-18:24018301:C:T1.2102Enhancer310EliteeQTLs,Distancechr18:24018000-24021147ENSR18_B6QP4
CTCFPOLR2ACREMRUNX3POU2F2EEDZFXZFXZBTB40GATAD2BZNF143NBNRELBTRIM22NFATC3ZNF217SMAD1TCF7ZNF207ZBED1ZNF687RUNX3RAD51MXI1BHLHE40TBL1XR1YY1TBX21NFICEZH2JUNDEP300MLLT1POU2F2MTA3MEF2BBACH1TCF12CBFBBCL3EEDZBTB33ARID3AARNTIKZF1MTA2ATF7ATF2JUNBSRFMEF2CDPF2IKZF2PAX5STAT5APOLR2ACREMNFATC1SKILBATFETS1ETV6BCL11AIRF4MEF2AELF1RAD21SPI1ETV6ATF2RUNX3MEF2ABATF
TTC39CGH18J024023-None0.0000Enhancer173EliteDistancechr18:24023516-24023728ENSR18_9CJG9
CTCFZNF217GATA3SMC3RAD21DPF2NEUROD1SP1SMARCE1CTBP1
TTC39CGH18J024025-18:24025823:C:G0.8944Enhancer235EliteeQTLs,Distancechr18:24025797-24028047ENSR18_9CJHD
POLR2ASTAT3FOSSP1JUNDFOSL2ATF3FOSMYCEP300STAT3RAD21SPI1CEBPB
TTC39CGH18J024033-18:24033421:C:T0.8375Enhancer192EliteeQTLs,Distancechr18:24033347-24034787-
KDM1ASKINCOR1SP1TBX3PKNOX1EHMT2ZNF384HNF4AARID3ACTCFFOXA2
TTC39CGH18J024050-18:24050929:T:G0.4697Enhancer288EliteDistancechr18:24050699-24052455ENSR18_B6QTN, ENSR18_9CJQK
RESTHNF1AYY1TCF7L2ZBTB33ASH2LCREMARID3APOLR2AEP300TBL1XR1KDM1AMAFFFOXA2XRCC5CCAR2FOXA1MAFKGATA4JUNDNR2F6SKIPOLR2GTCF7FOXP1SP1BHLHE40HNF4GRXRANCOA3TFAP4NR2F2FOSNR2F1NFICNCOR1IKZF1MAXHDAC2HES1MNTIKZF2SIN3AATF2IRF4ATF3JUNBBHLHE40SRFNR3C1EGR1ETV4ESRRARAD51TBX21ETV6TCF12CTBP1RUNX3FOSL2EP300STAT3BATFFOXA1TBX3CEBPBHNF4AUSF1PKNOX1HNF1ACTCFE2F1CREMGATA3ATF2JUNDSMC3RAD21ATF7FOXP1EP300FOXA1FOXA2ZHX2CREB1ATF3FOSPOLR2ARESTSP1ETS1CEBPBFOSL2NR3C1TCF12HNF4ATAF1RXRA
TTC39CGH18J024053-18:24054564:A:G0.5744Enhancer210EliteC-HiC,Distancechr18:24053103-24057212ENSR18_9CJR6, ENSR18_9CJRN
EP300JUNDFOSJUNBIKZF1IKZF2ATF7TBX21RUNX3RFX5EBF1SRFTRIM28SMARCA4JUNBCTCF
TTC39CGH18J024063-18:24064633:T:A0.6199Enhancer214-Distancechr18:24063325-24065794ENSR18_8P4QJ
JUNDFOSL2TCF7JUNBFOSTRIM28ZNF384NCOR1ZMYM3FOXA1TAF1SKIZBTB33POLR2ACREMRESTRAD21RXRASP1ATF3HNF4GNR2F6JUNDFOXA2HNF1ATBX3ARID3ATCF7HDAC2HNF4AEP300YY1KDM1APKNOX1CTCF
TTC39CGH18J024075-18:24075708:A:C0.4572Enhancer322EliteeQTLs,Distancechr18:24075697-24077218ENSR18_B6R29, ENSR18_57MW99, ENSR18_57MWC7
ZNF384SMARCA4CHD4GATA1IKZF1SKILRNF2NFICBCORATF7SMARCA4ESRRATCF12CTBP1HDAC1CBFBHDAC2DPF2TRIM24SIN3AMAXCTCFTRIM28RXRAZNF217NR2F1GATA3ZNF282EEDZEB2ATF3NCOR1JUNDSOX6ZBED1CBFA2T2FOXA2ATF2FOSGATAD2BTBL1XR1PKNOX1ARID3APOLR2ACREMJUNBRCOR1TBX3ARID1BTBPCBFA2T3ZNF24MEIS2JUNGATA4EP300BHLHE40SMARCC2DACH1SKIMNTRUNX3KDM1ARUNX1SMARCE1TCF7HES1NR2F6RESTMAFKSOX13FOXA1MYCYY1RAD21FOSL1FOSL2KLF16MAFFZNF384BATFSP1MEF2ATFAP4NR2F2NR3C1LEF1TCF7L2SMC3ZNF143ZNF263XRCC5ZEB1SMARCA4
TTC39CGH18J024085-18:24085763:A:G0.3284Enhancer36-eQTLs,Distancechr18:24085746-24086959-
FOS
TTC39CGH18J024112-18:24112985:G:C1.1984Enhancer232-C-HiC,Distancechr18:24112103-24114266ENSR18_9CKF7
CTCFRAD21NRF1EHMT2ARID3AZHX2TBL1XR1YY1CREB1ZNF384TCF12ATF7SP1RXRASKINCOR1POLR2ARESTZBTB33ASH2LCTCFMAXFOXA2RAD21PKNOX1NR2F6TBX3RFX5ETS1TCF7CTBP1CREMKDM1AESRRAMNTFOSFOXP1SIN3AFOXA1TBPSOX13TAF1ATF3FOSL2SMC3CUX1HDAC2XRCC5EP300FOXK2KAT2BJUNHNF4ATFAP4JUNDSMARCA4HNF1AMAFFNR3C1MAFKNFE2L2BHLHE40
TTC39CGH18J024119-None0.0000Enhancer156-Distancechr18:24119116-24119266ENSR18_B6R8G, ENSR18_57N6MS
CTCFRFX1SMC3FOXA1RAD21ZNF143MNTL3MBTL2EP300MAXTRIM22MXI1ZNF384TBX21MYCBHLHE40ATF3CBFA2T2RESTRAD51E2F6USF2USF1MITF