GWAS Annotated Elements: TTC39C

Gene: tetratricopeptide repeat domain 39C

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH18J023634 - 18:23635290:TA:T 0.0986 Enhancer - C-HiC chr18:23634856-23636444
STAT3EBF1FOSPOLR2AJUNDRUNX3MAFKMAFFIKZF1C11orf30ZNF316NFE2BMI1MYCUSF1CEBPBHDAC2EP300HNF4GHNF4ANR2F6FOSJUND
GH18J023636 - None 0.0000 Enhancer - C-HiC chr18:23636556-23636706
NR2F6FOSJUNDATF3
GH18J023881 - 18:23881681:G:A 0.1784 Enhancer Elite C-HiC chr18:23881576-23881726
POLR2AEP300
GH18J023882 - 18:23884153:A:G 0.9585 Promoter/Enhancer Elite C-HiC chr18:23882509-23886322
EHMT2FOSJUNDPOLR2ACEBPBSP1MAXEP300ATF3RXRASKITBPBHLHE40HNF4AARID3APOLR2GFOXA2RAD21USF1TCF7RBFOX2KDM1AFOXA1EP300STAT3FOSPOLR2AEP300HNRNPKTBX21ZNF384
GH18J023924 - 18:23925261:T:C 0.4693 Enhancer - C-HiC chr18:23924696-23925586
FOSJUNDCEBPB
GH18J023943 - 18:23944586:A:T 1.1521 Enhancer - eQTLs,C-HiC chr18:23943949-23944849
SP1EP300FOSMAFKNFE2L2CEBPB
GH18J023949 - 18:23951938:G:A 1.4605 Enhancer - C-HiC chr18:23949038-23952299
ETS1POLR2ANANOGNANOGZFX
GH18J023967 - 18:23968210:C:A 0.6997 Enhancer Elite C-HiC chr18:23967043-23968694
MTA2PKNOX1CBFBNBNIKZF2IKZF1RELBTBX21DPF2MTA3MLLT1ZNF687EEDGATAD2BBHLHE40EBF1RUNX3MNT
GH18J023969 - 18:23969940:T:C 0.5974 Enhancer - C-HiC chr18:23969750-23971354
IKZF1NRF1NFICPOLR2ATBX21ZNF687SPI1RUNX3MAFK
GH18J023972 - 18:23972350:C:G 0.0322 Enhancer Elite eRNA_co-expression chr18:23972299-23972974
IKZF1IKZF2STAT5ANFICATF7ZBED1EP300RUNX3CREMIRF4SRFPKNOX1MYCFOSEBF1CREB1KDM1AJUNBHDAC2GATA3EEDBATF
GH18J023981 - 18:23982300:C:T 1.4117 Enhancer Elite eQTLs chr18:23981197-23983605
NFICIKZF1MEF2BIKZF2ATF2JUNBZBED1NFATC1CREMCBX5FOXA1ETV6MEF2AMEF2CRUNX3TAF1BATFRAD21PAX5TCF12EEDSMARCA4POLR2AKDM1ATRIM28TAF1NRF1SP1TCF12RESTHNF4ARAD21EP300SMC3FOSFOSL2RUNX3BHLHE40FOXA1FOXA2REST
GH18J023986 - 18:23986997:G:A 1.3701 Enhancer - Distance chr18:23986144-23988003
POU2F2BCL11AARID3AFOSBCL3MEF2AGABPACREMTCF7JUNBNFICBATFATF2BCL3NFICRUNX3EEDBATF
GH18J023992 - None 0.0000 Enhancer Elite Distance chr18:23991136-23991286
MAFKZNF316YY1MAFFFOS
GH18J023991 - 18:23993422:A:C 0.9929 Promoter/Enhancer Elite Distance chr18:23991602-23995327
ZBED1CTCFMTA3YY1MXI1SMAD5DPF2POLR2ARAD21IKZF2IKZF1RXRASP1ESR1HNF4ARCOR1GATA3ZBTB33NFATC1NFICMTA2JUNBNR3C1CBFBPKNOX1TBX21FOSTAF1ARID3ACREMFOXA1MYCEEDEP300STAT3PBX3RUNX3ATF2TRIM28MXI1POLR2ASTAT3FOXA1ZBED1ARID3ANR3C1MYCGATA3RESTUSF1EP300SMAD5CBFBPOU2F2CEBPBFOSNFE2L2JUNBRCOR1TAF1MNTMEF2AJUNDPAX5ATF2CBFBETV6RUNX3MEF2ABCL3NFICEEDPAX5CREM
GH18J023998 - 18:24003691:CT:C 1.7427 Enhancer Elite eQTLs,eRNA_co-expression,Distance chr18:23998285-24004422
CTCFSIN3AZNF217POLR2AFOXA2TFAP4ESR1FOXA1ATF7FOSMYCDPF2STAT3ZNF579MNTRFX1MTA3ELF1SREBF1YY1YY1EEDZBTB33NFICFOXA2SP1RUNX3FOXA1JUNDJUNBCEBPBRXRAHNF4ANR2F2BATFHNF4AHNF4GMAFKRXRARAD21FOXA2RUNX3RXRASP1CTCFRAD21SPI1DPF2ZKSCAN1IKZF1FOXA2IKZF2EEDJUNBNFICSPI1RUNX3MEF2CMEF2AEED
GH18J024006 - 18:24007358:T:C 1.1537 Enhancer - Distance chr18:24006591-24007518 -
GH18J024007 - 18:24008371:G:C 1.1278 Enhancer - Distance chr18:24007691-24008543
IKZF2JUNB
GH18J024009 - 18:24011058:C:T 1.2091 Enhancer Elite Distance chr18:24009158-24013154
C11orf30NFE2L2MAXIKZF1SIN3APOLR2AMXI1MTA3CTCFEBF1NBNEEDSTAT5ATBPMEF2BSTAT3ZNF217BMI1NFATC3IKZF2ZBED1NFATC1GATAD2BRELBARNTATF2BHLHE40EP300RUNX3SMC3NFICARID3ATBL1XR1BCL11ACBFBETV6RCOR1RESTMEF2ASKILTCF12YY1POU2F2MLLT1RAD21MTA2PAX5DPF2MEF2CCREMKLF5ZNF207TAF1PKNOX1MEIS2SMAD5SRFIRF4TBX21ATF7PBX3NFYBCREMSPI1ZBED1EEDRAD51MAXNFYBUSF2NR2F2USF1SP1YY1HNF4ARXRARAD21GATAD2BRELBMTA2ATF2ARID3ANFATC3NFICELF1DPF2ETV6SPI1RUNX3EP300IKZF1IKZF2TBX21ETS1EEDYY1RAD21SP1FOXA1RXRAMAXFOXA2HNF4ABCL3
GH18J024013 - 18:24014009:C:A 1.2447 Promoter/Enhancer Elite Distance chr18:24013595-24016680
CBX2ATF2PKNOX1CTBP1POLR2ARBM39SREBF2EGR1EZH2L3MBTL2HNRNPLLBHLHE40IKZF1ASH2LKDM1AYY1RAD21NBNRBBP5RBFOX2TAF15HNRNPLSMAD5TAF1CTCFKDM4AMEF2BBCL11AEEDETV6UBTFBACH1GABPARESTRELBSPI1JUNDSIN3ATBL1XR1EP300GABPB1IKZF2CBFBPHF8HDAC2PCBP1DPF2POLR2GE4F1GATAD2BELF1NRF1BHLHE40ZBTB7APAX5MXI1FUSHNRNPKE2F6MAXZSCAN29ZFXKDM4AZNF263MYCBATFCTCFZNF217BACH1RUNX3ZNF687AGO2CHD1ESRRASIN3ARNF2YY1ZNF592SMARCA5ARNTHDAC2FOXM1E2F6NR3C1PKNOX1RESTIKZF2CLOCKGATA3SP1BHLHE40SMC3L3MBTL2RAD21YY1MAXZNF687TAF1BACH1MNTIKZF1MYCTBPEP300CEBPBCHD1FOXA2TBL1XR1POLR2ACTCFEBF1YY1SIX5CTCFIKZF2TAF1ZNF143IKZF1RELBFOXA2ESR1SMC3FOXA1GATA3ZBED1TRIM22MYNN
GH18J024016 - None 0.0000 Enhancer Elite Distance chr18:24016756-24016906
CTCFIKZF2TAF1ZNF143IKZF1RELBFOXA2ESR1SMC3FOXA1GATA3ZBED1TRIM22MYNNSPI1RFX1RAD21BMI1
GH18J024017 - 18:24017607:G:A 0.1420 Enhancer Elite Distance chr18:24017600-24017800
POLR2A
GH18J024018 - 18:24018301:C:T 1.2102 Enhancer Elite eQTLs,Distance chr18:24018000-24021147
CTCFPOLR2ACREMRUNX3POU2F2EEDZFXZFXZBTB40GATAD2BZNF143NBNRELBTRIM22NFATC3ZNF217SMAD1TCF7ZNF207ZBED1ZNF687RUNX3RAD51MXI1BHLHE40TBL1XR1YY1TBX21NFICEZH2JUNDEP300MLLT1POU2F2MTA3MEF2BBACH1TCF12CBFBBCL3EEDZBTB33ARID3AARNTIKZF1MTA2ATF7ATF2JUNBSRFMEF2CDPF2IKZF2PAX5STAT5APOLR2ACREMNFATC1SKILBATFETS1ETV6BCL11AIRF4MEF2AELF1RAD21SPI1ETV6ATF2RUNX3MEF2ABATF
GH18J024023 - None 0.0000 Enhancer Elite Distance chr18:24023516-24023728
CTCFZNF217GATA3SMC3RAD21DPF2NEUROD1SP1SMARCE1CTBP1
GH18J024025 - 18:24025823:C:G 0.8944 Enhancer Elite eQTLs,Distance chr18:24025797-24028047
POLR2ASTAT3FOSSP1JUNDFOSL2ATF3FOSMYCEP300STAT3RAD21SPI1CEBPB
GH18J024033 - 18:24033421:C:T 0.8375 Enhancer Elite eQTLs,Distance chr18:24033347-24034787
KDM1ASKINCOR1SP1TBX3PKNOX1EHMT2ZNF384HNF4AARID3ACTCFFOXA2
GH18J024050 - 18:24050929:T:G 0.4697 Enhancer Elite Distance chr18:24050699-24052455
RESTHNF1AYY1TCF7L2ZBTB33ASH2LCREMARID3APOLR2AEP300TBL1XR1KDM1AMAFFFOXA2XRCC5CCAR2FOXA1MAFKGATA4JUNDNR2F6SKIPOLR2GTCF7FOXP1SP1BHLHE40HNF4GRXRANCOA3TFAP4NR2F2FOSNR2F1NFICNCOR1IKZF1MAXHDAC2HES1MNTIKZF2SIN3AATF2IRF4ATF3JUNBBHLHE40SRFNR3C1EGR1ETV4ESRRARAD51TBX21ETV6TCF12CTBP1RUNX3FOSL2EP300STAT3BATFFOXA1TBX3CEBPBHNF4AUSF1PKNOX1HNF1ACTCFE2F1CREMGATA3ATF2JUNDSMC3RAD21ATF7FOXP1EP300FOXA1FOXA2ZHX2CREB1ATF3FOSPOLR2ARESTSP1ETS1CEBPBFOSL2NR3C1TCF12HNF4ATAF1RXRA
GH18J024053 - 18:24054564:A:G 0.5744 Enhancer Elite C-HiC,Distance chr18:24053103-24057212
EP300JUNDFOSJUNBIKZF1IKZF2ATF7TBX21RUNX3RFX5EBF1SRFTRIM28SMARCA4JUNBCTCF
GH18J024063 - 18:24064633:T:A 0.6199 Enhancer - Distance chr18:24063325-24065794
JUNDFOSL2TCF7JUNBFOSTRIM28ZNF384NCOR1ZMYM3FOXA1TAF1SKIZBTB33POLR2ACREMRESTRAD21RXRASP1ATF3HNF4GNR2F6JUNDFOXA2HNF1ATBX3ARID3ATCF7HDAC2HNF4AEP300YY1KDM1APKNOX1CTCF
GH18J024075 - 18:24075708:A:C 0.4572 Enhancer Elite eQTLs,Distance chr18:24075697-24077218
ZNF384SMARCA4CHD4GATA1IKZF1SKILRNF2NFICBCORATF7SMARCA4ESRRATCF12CTBP1HDAC1CBFBHDAC2DPF2TRIM24SIN3AMAXCTCFTRIM28RXRAZNF217NR2F1GATA3ZNF282EEDZEB2ATF3NCOR1JUNDSOX6ZBED1CBFA2T2FOXA2ATF2FOSGATAD2BTBL1XR1PKNOX1ARID3APOLR2ACREMJUNBRCOR1TBX3ARID1BTBPCBFA2T3ZNF24MEIS2JUNGATA4EP300BHLHE40SMARCC2DACH1SKIMNTRUNX3KDM1ARUNX1SMARCE1TCF7HES1NR2F6RESTMAFKSOX13FOXA1MYCYY1RAD21FOSL1FOSL2KLF16MAFFZNF384BATFSP1MEF2ATFAP4NR2F2NR3C1LEF1TCF7L2SMC3ZNF143ZNF263XRCC5ZEB1SMARCA4
GH18J024085 - 18:24085763:A:G 0.3284 Enhancer - eQTLs,Distance chr18:24085746-24086959
FOS
GH18J024112 - 18:24112985:G:C 1.1984 Enhancer - C-HiC,Distance chr18:24112103-24114266
CTCFRAD21NRF1EHMT2ARID3AZHX2TBL1XR1YY1CREB1ZNF384TCF12ATF7SP1RXRASKINCOR1POLR2ARESTZBTB33ASH2LCTCFMAXFOXA2RAD21PKNOX1NR2F6TBX3RFX5ETS1TCF7CTBP1CREMKDM1AESRRAMNTFOSFOXP1SIN3AFOXA1TBPSOX13TAF1ATF3FOSL2SMC3CUX1HDAC2XRCC5EP300FOXK2KAT2BJUNHNF4ATFAP4JUNDSMARCA4HNF1AMAFFNR3C1MAFKNFE2L2BHLHE40
GH18J024119 - None 0.0000 Enhancer - Distance chr18:24119116-24119266
CTCFRFX1SMC3FOXA1RAD21ZNF143MNTL3MBTL2EP300MAXTRIM22MXI1ZNF384TBX21MYCBHLHE40ATF3CBFA2T2RESTRAD51E2F6USF2USF1MITF