GWAS Annotated: ZIC4

Gene: Zic family member 4

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
ZIC4GH03J146975-None0.0000Enhancer141EliteeRNA_co-expressionchr3:146975482-146975734--
ZIC4GH03J147379-3:147379060:C:A0.7880Enhancer63-C-HiCchr3:147379051-147379250-
EZH2CTCF
ZIC4GH03J147391-3:147393992:T:C1.5996Enhancer240EliteDistancechr3:147391848-147395096ENSR3_CJLW7, ENSR3_539N37K
EZH2SUZ12ASH2LKDM4ASREBF2SIN3AZNF687CTCFHDAC2MXI1MYCTBPTRIM22ZFXCHD1CUX1RAD21POLR2AMNTGABPATCF12ZNF143HNF4ASMC3EGR1RXRARBBP5SP1ZHX2MAXRNF2PKNOX1TAF1RFX5ELF1YY1CREB1ZNF444HNRNPLLEP300CLOCKRNF2MYCCTCFZNF687POLR2GPOLR2AMYCEGR1SP1RAD21ZFXHNF4AZNF574RBFOX2JUNDSMC3SIN3ATAF1ZNF579TBPRFX1ASH2LPHF8TAF7YY1GABPACTCFBMI1CLOCKCHD1EGR1CTCFSUZ12RNF2TCF12POLR2ARESTGABPAMAXSP1JUNDHNF4AHNF4GFOXA1RXRAYY1
ZIC4GH03J147399-3:147397647:C:T0.3692Enhancer153EliteDistancechr3:147397127-147397689ENSR3_CJLWG
EZH2SUZ12HDAC2MXI1EP300JUNDEGR1RNF2SMC3TAF1CTCFYY1RAD21RBBP5POLR2AASH2LSUZ12
ZIC4GH03J147397-3:147397988:T:C0.7258Enhancer133EliteDistancechr3:147397893-147398083ENSR3_CJLWG
EZH2RNF2TAF1RBBP5ASH2LSUZ12RESTHDAC2KDM4AKDM1AJUNDZNF143
ZIC4GH03J147398-3:147398297:A:G1.5957Enhancer133EliteDistancechr3:147398193-147398403ENSR3_CJLWG
EZH2RNF2TAF1RBBP5ASH2LSUZ12HDAC2KDM4AKDM1AZNF143MYCCHD1EGR1
ZIC4GH03J147408-None0.0000Promoter/Enhancer211EliteDistancechr3:147406045-147406105ZIC4_1
EZH2SUZ12RNF2KDM4A
ZIC4GH03J147406-None0.0000Promoter/Enhancer211EliteDistancechr3:147406750-147406810ZIC4_3
EZH2SUZ12RNF2EP300TAF1
ZIC4GH03J147407-3:147408655:G:A2.0714Promoter/Enhancer483EliteDistancechr3:147407358-147412176ENSR3_CJLX6, ENSR3_946HQ4, ENSR3_539N5X7, ENSR3_539N676, ZIC4_2, ZIC1_1
EZH2SUZ12RNF2ASH2LSP1EP300CHD7CHD1SP1MAFKEGR1TCF12SAP30MXI1PKNOX1ASH2LL3MBTL2NRF1SP1NANOGTAF1USF1USF2ATF3FOXM1POLR2ARESTEP300ZNF384SUZ12SMC3TCF12RAD21CHD1SRFEGR1KDM4ARNF2MXI1POLR2AYY1SIN3ARBBP5
ZIC4GH03J147413-None0.0000Enhancer144EliteDistancechr3:147412513-147412663-
EZH2SUZ12RNF2MXI1ASH2LTBPCHD1TCF12BACH1EGR1
ZIC4GH03J147414-None0.0000Enhancer153EliteDistancechr3:147412673-147412823-
EZH2SUZ12RNF2MXI1ASH2LTBPCHD1TCF12BACH1EGR1SAP30
ZIC4GH03J147412-3:147412982:A:T0.0684Enhancer133EliteDistancechr3:147412953-147413103-
EZH2SUZ12RNF2MXI1ASH2LCHD1SAP30
ZIC4GH03J147415-None0.0000Enhancer160EliteDistancechr3:147415224-147415456ENSR3_86C2LW
EZH2RNF2TCF12SUZ12CHD7
ZIC4GH03J147419-None0.0000Enhancer277EliteeRNA_co-expression,Distancechr3:147419193-147419435ENSR3_B348X2
EZH2RNF2KDM4ARBBP5NRF1MXI1POLR2AZNF639MGAZBTB2SMC3MEIS2SP1SIN3AYY1BHLHE40L3MBTL2JUNPOU2F2MYCUSF2EGR1USF1SUZ12RAD21MAXE2F6CTCFASH2L
ZIC4GH03J147420-3:147420189:T:G2.1359Enhancer107EliteeRNA_co-expression,Distancechr3:147420116-147420323-
EZH2SUZ12RNF2
ZIC4GH03J147424-3:147424604:G:T0.1676Enhancer150EliteeRNA_co-expressionchr3:147424413-147424628ENSR3_B348XQ
EZH2SUZ12RNF2KDM4AASH2L
ZIC4GH03J147613-None0.0000Enhancer9-eRNA_co-expressionchr3:147613887-147614053--