GWAS Annotated Elements: ZIC4

Gene: Zic family member 4

Significance Threshold: -log10(P) ≥ 6.0

GHID GWAS Hit Lead SNP -log10P Type Elite Association Location TFBSs
GH03J146975 - None 0.0000 Enhancer Elite eRNA_co-expression chr3:146975482-146975734 -
GH03J147379 - 3:147379060:C:A 0.7880 Enhancer - C-HiC chr3:147379051-147379250
EZH2CTCF
GH03J147391 - 3:147393992:T:C 1.5996 Enhancer Elite Distance chr3:147391848-147395096
EZH2SUZ12ASH2LKDM4ASREBF2SIN3AZNF687CTCFHDAC2MXI1MYCTBPTRIM22ZFXCHD1CUX1RAD21POLR2AMNTGABPATCF12ZNF143HNF4ASMC3EGR1RXRARBBP5SP1ZHX2MAXRNF2PKNOX1TAF1RFX5ELF1YY1CREB1ZNF444HNRNPLLEP300CLOCKRNF2MYCCTCFZNF687POLR2GPOLR2AMYCEGR1SP1RAD21ZFXHNF4AZNF574RBFOX2JUNDSMC3SIN3ATAF1ZNF579TBPRFX1ASH2LPHF8TAF7YY1GABPACTCFBMI1CLOCKCHD1EGR1CTCFSUZ12RNF2TCF12POLR2ARESTGABPAMAXSP1JUNDHNF4AHNF4GFOXA1RXRAYY1
GH03J147399 - 3:147397647:C:T 0.3692 Enhancer Elite Distance chr3:147397127-147397689
EZH2SUZ12HDAC2MXI1EP300JUNDEGR1RNF2SMC3TAF1CTCFYY1RAD21RBBP5POLR2AASH2LSUZ12
GH03J147397 - 3:147397988:T:C 0.7258 Enhancer Elite Distance chr3:147397893-147398083
EZH2RNF2TAF1RBBP5ASH2LSUZ12RESTHDAC2KDM4AKDM1AJUNDZNF143
GH03J147398 - 3:147398297:A:G 1.5957 Enhancer Elite Distance chr3:147398193-147398403
EZH2RNF2TAF1RBBP5ASH2LSUZ12HDAC2KDM4AKDM1AZNF143MYCCHD1EGR1
GH03J147408 - None 0.0000 Promoter/Enhancer Elite Distance chr3:147406045-147406105
EZH2SUZ12RNF2KDM4A
GH03J147406 - None 0.0000 Promoter/Enhancer Elite Distance chr3:147406750-147406810
EZH2SUZ12RNF2EP300TAF1
GH03J147407 - 3:147408655:G:A 2.0714 Promoter/Enhancer Elite Distance chr3:147407358-147412176
EZH2SUZ12RNF2ASH2LSP1EP300CHD7CHD1SP1MAFKEGR1TCF12SAP30MXI1PKNOX1ASH2LL3MBTL2NRF1SP1NANOGTAF1USF1USF2ATF3FOXM1POLR2ARESTEP300ZNF384SUZ12SMC3TCF12RAD21CHD1SRFEGR1KDM4ARNF2MXI1POLR2AYY1SIN3ARBBP5
GH03J147413 - None 0.0000 Enhancer Elite Distance chr3:147412513-147412663
EZH2SUZ12RNF2MXI1ASH2LTBPCHD1TCF12BACH1EGR1
GH03J147414 - None 0.0000 Enhancer Elite Distance chr3:147412673-147412823
EZH2SUZ12RNF2MXI1ASH2LTBPCHD1TCF12BACH1EGR1SAP30
GH03J147412 - 3:147412982:A:T 0.0684 Enhancer Elite Distance chr3:147412953-147413103
EZH2SUZ12RNF2MXI1ASH2LCHD1SAP30
GH03J147415 - None 0.0000 Enhancer Elite Distance chr3:147415224-147415456
EZH2RNF2TCF12SUZ12CHD7
GH03J147419 - None 0.0000 Enhancer Elite eRNA_co-expression,Distance chr3:147419193-147419435
EZH2RNF2KDM4ARBBP5NRF1MXI1POLR2AZNF639MGAZBTB2SMC3MEIS2SP1SIN3AYY1BHLHE40L3MBTL2JUNPOU2F2MYCUSF2EGR1USF1SUZ12RAD21MAXE2F6CTCFASH2L
GH03J147420 - 3:147420189:T:G 2.1359 Enhancer Elite eRNA_co-expression,Distance chr3:147420116-147420323
EZH2SUZ12RNF2
GH03J147424 - 3:147424604:G:T 0.1676 Enhancer Elite eRNA_co-expression chr3:147424413-147424628
EZH2SUZ12RNF2KDM4AASH2L
GH03J147613 - None 0.0000 Enhancer - eRNA_co-expression chr3:147613887-147614053 -